##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552264_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 280994 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.04092614077169 28.0 16.0 30.0 16.0 33.0 2 26.23411531918831 30.0 25.0 31.0 16.0 33.0 3 27.16673665629871 30.0 25.0 31.0 16.0 33.0 4 27.94758251065859 30.0 19.0 35.0 19.0 35.0 5 30.01274404435682 32.0 28.0 35.0 19.0 35.0 6 30.593742215136267 33.0 28.0 35.0 17.0 35.0 7 31.99730243350392 33.0 31.0 35.0 28.0 35.0 8 33.119589742129726 35.0 33.0 35.0 28.0 37.0 9 34.06891606226468 35.0 32.0 37.0 27.0 39.0 10 34.26326184900745 35.0 32.0 39.0 27.0 39.0 11 34.756788401175825 37.0 34.0 39.0 27.0 39.0 12 32.74480949771169 35.0 30.0 37.0 25.0 39.0 13 33.8164622732158 35.0 32.0 37.0 27.0 39.0 14 35.02989031794273 37.0 33.0 39.0 27.0 41.0 15 35.37340654960604 37.0 33.0 39.0 27.0 41.0 16 35.83668334555186 37.0 34.0 40.0 30.0 41.0 17 34.13934105354563 37.0 31.0 39.0 24.0 41.0 18 34.26748969728891 37.0 32.0 39.0 26.0 40.0 19 33.98219179057204 37.0 32.0 38.0 25.0 40.0 20 34.22102607173107 35.0 32.0 38.0 27.0 40.0 21 35.02236702563044 36.0 34.0 39.0 30.0 40.0 22 35.67645928382812 37.0 34.0 39.0 30.0 40.0 23 36.019669459134356 37.0 35.0 40.0 31.0 40.0 24 35.787162715218116 37.0 35.0 40.0 31.0 40.0 25 34.68788657409055 36.0 33.0 39.0 27.0 40.0 26 34.91670640654249 36.0 33.0 39.0 27.0 40.0 27 35.6230524495185 37.0 34.0 39.0 30.0 40.0 28 35.48208502672655 37.0 34.0 40.0 30.0 40.0 29 35.645693502352366 37.0 35.0 40.0 30.0 41.0 30 35.1946767546638 37.0 34.0 40.0 27.0 41.0 31 34.80721652419625 37.0 34.0 40.0 25.0 41.0 32 34.50600368691146 37.0 34.0 40.0 25.0 40.0 33 34.1292233997879 37.0 33.0 40.0 21.0 41.0 34 32.80503142415852 36.0 32.0 39.0 18.0 40.0 35 32.78230851904311 36.0 32.0 39.0 15.0 40.0 36 32.46547257236809 36.0 32.0 39.0 14.0 40.0 37 32.47614183932753 36.0 32.0 39.0 12.0 40.0 38 32.24019374079162 36.0 31.0 39.0 10.0 40.0 39 31.889915798913854 35.0 31.0 39.0 10.0 40.0 40 31.633540217940595 35.0 30.0 39.0 10.0 40.0 41 31.58801611422308 35.0 30.0 39.0 10.0 40.0 42 31.653875171711853 35.0 30.0 39.0 10.0 40.0 43 31.786942069937435 36.0 31.0 39.0 10.0 40.0 44 31.45932653366264 35.0 30.0 39.0 10.0 40.0 45 31.643334021367004 35.0 30.0 39.0 10.0 40.0 46 31.304344576752527 35.0 30.0 38.0 10.0 40.0 47 31.35943116223122 35.0 30.0 39.0 10.0 40.0 48 31.3856523626839 35.0 30.0 39.0 10.0 40.0 49 31.050296447610982 35.0 29.0 38.0 10.0 40.0 50 31.059499491092335 35.0 29.0 38.0 10.0 40.0 51 27.795109504117526 31.0 23.0 35.0 8.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 9.0 9 10.0 10 16.0 11 25.0 12 16.0 13 27.0 14 36.0 15 78.0 16 136.0 17 290.0 18 528.0 19 807.0 20 1297.0 21 1823.0 22 2587.0 23 3697.0 24 5516.0 25 8102.0 26 9958.0 27 10500.0 28 10277.0 29 10419.0 30 11932.0 31 15104.0 32 19175.0 33 25379.0 34 33826.0 35 43470.0 36 37679.0 37 21886.0 38 6036.0 39 351.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.68058392705894 14.619885122102252 17.834188630362213 26.865342320476593 2 41.50764785013203 27.044705580902082 18.749510665708165 12.69813590325772 3 24.93967842729738 25.22509377424429 37.37268411425155 12.46254368420678 4 22.24709424400521 18.42138978056471 44.80202424251052 14.529491732919563 5 25.532929528744386 21.880182494999893 36.11678541178816 16.470102564467567 6 18.75662825540759 32.169014285002525 37.40435738841399 11.670000071175897 7 58.73719723552816 4.845655067367987 32.42489163469683 3.9922560624070265 8 57.10762507384499 10.694890282354784 26.79487818245229 5.402606461347929 9 52.523897307415815 5.451006071304013 27.476743275657135 14.548353345623038 10 30.952974084855907 18.711431560816244 34.73027893834032 15.60531541598753 11 24.288774849285037 20.061282447312042 38.56452450942013 17.08541819398279 12 21.0581008847164 17.198587870203635 42.69948824530061 19.043822999779355 13 18.973714741240027 18.82673651394692 47.64443368897556 14.555115055837492 14 18.065866175078472 23.44462871093333 39.74462088158466 18.74488423240354 15 14.962952945614497 19.414649423119354 49.108877769632095 16.51351986163406 16 16.454443867128834 20.46129098841968 40.25673146045823 22.827533683993252 17 16.654092258197682 19.15485739909037 43.775667807853544 20.415382534858395 18 17.60927279586041 20.155946390314384 42.625465312426606 19.609315501398605 19 17.321722172003675 22.400122422542832 39.99765119539919 20.280504210054307 20 17.985437411474976 21.515406022904404 43.804849925621184 16.694306639999432 21 18.158038961686014 25.134344505576635 40.31011338320391 16.397503149533442 22 16.457290903008605 18.81570424991281 40.794465362249724 23.932539484828858 23 16.43166758009068 24.98736627828352 40.84713552602547 17.733830615600333 24 19.343473526125113 19.779781774699813 38.75242887748493 22.124315821690143 25 16.07614397460444 26.310526203406475 38.082663686769116 19.530666135219967 26 15.734855548517048 19.915727737958818 41.75000177939743 22.599414934126706 27 18.7157021146359 21.938902610020143 38.256332875435064 21.089062399908894 28 15.13982504964519 21.192623330035516 43.94115176836516 19.726399851954135 29 19.7082499982206 18.954853128536552 40.444991708008 20.891905165234846 30 17.032036271237107 21.971643522637493 41.01012833014228 19.986191875983117 31 21.162729453297935 22.09655722186239 36.49544118379752 20.245272141042157 32 21.860609123326476 22.69123184124928 37.375531150131316 18.072627885292924 33 18.70075517626711 19.948112771091196 37.154885869449174 24.196246183192525 34 22.622547100649836 21.14991779183897 38.01255542822978 18.21497967928141 35 19.172651373338933 20.103632106023618 36.277642938995136 24.446073581642313 36 22.000469760920165 23.662071076250736 35.781191057460305 18.556268105368797 37 22.075560332249086 22.30296732314569 34.679032292504466 20.942440052100757 38 19.747040862082464 25.801974419382624 34.13418080101355 20.31680391752137 39 27.60272461333694 20.120002562332292 33.28647586781213 18.990796956518643 40 20.594745795283885 20.067688278041523 40.461362164316675 18.876203762357914 41 23.949265820622504 23.241065645529797 32.365103881221664 20.444564652626035 42 20.230681082158338 21.959899499633444 38.343167469768034 19.46625194844018 43 24.552837427133674 20.550616739147458 32.707104066278994 22.189441767439874 44 21.70010747560446 21.098315266518146 34.623515092848955 22.578062165028435 45 20.153455233919583 20.138864175035767 34.995409154643866 24.712271436400776 46 24.658889513655097 22.291579179626613 33.877235812864335 19.172295493853962 47 18.60395595635494 20.00256233229179 41.86993316583273 19.523548545520544 48 20.804358811931927 22.565606383054444 34.156601208566734 22.4734335964469 49 19.518566232730947 19.216068670505422 39.850317088621104 21.415048008142524 50 20.685495063951542 18.711787440301215 37.194032612796 23.408684882951235 51 20.28192772799419 19.21927158587016 33.84449490024698 26.654305785888667 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 130.0 1 363.5 2 597.0 3 8573.5 4 16550.0 5 11256.5 6 5963.0 7 5491.0 8 5019.0 9 4778.5 10 4538.0 11 4393.5 12 4249.0 13 3999.5 14 3750.0 15 3527.5 16 3305.0 17 2959.0 18 2613.0 19 2431.0 20 2249.0 21 2228.0 22 2207.0 23 2116.5 24 2026.0 25 2113.0 26 2361.5 27 2523.0 28 2642.5 29 2762.0 30 3137.5 31 3513.0 32 3744.0 33 3975.0 34 4307.0 35 4639.0 36 4989.5 37 5340.0 38 5847.0 39 6354.0 40 7212.0 41 8070.0 42 8974.5 43 9879.0 44 11620.5 45 13362.0 46 26716.5 47 40071.0 48 31818.5 49 23566.0 50 22904.5 51 22243.0 52 19293.0 53 16343.0 54 14298.0 55 12253.0 56 11136.5 57 10020.0 58 9198.5 59 8377.0 60 8163.0 61 7949.0 62 7204.0 63 6459.0 64 5784.0 65 5109.0 66 4535.5 67 3962.0 68 3402.0 69 2842.0 70 2510.0 71 2178.0 72 1867.5 73 1557.0 74 1300.0 75 804.5 76 566.0 77 426.5 78 287.0 79 229.5 80 172.0 81 138.0 82 104.0 83 71.0 84 38.0 85 28.0 86 18.0 87 14.5 88 11.0 89 9.5 90 8.0 91 5.5 92 3.0 93 2.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 280994.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.818576414923605 #Duplication Level Percentage of deduplicated Percentage of total 1 78.72262664223545 37.64403937675237 2 7.760294299644349 7.421724519396787 3 3.626967968078075 5.20309334808065 4 2.418502824113064 4.625974484182364 5 1.860281252394747 4.447800061044399 6 1.4847898241773378 4.260032140051501 7 1.0762171341579023 3.602421988814582 8 0.8092655385139097 3.0958340794713353 9 0.5567139098365549 2.3959139974893167 >10 1.6064175594612458 11.029838612287488 >50 0.049451164688139676 1.6008196122715466 >100 0.02097928198890774 2.017863933821251 >500 0.0014985201420648386 0.5521179549038615 >1k 0.002997040284129677 1.91646913743073 >5k 0.002247780213097258 6.2682048157320285 >10k+ 7.492600710324193E-4 3.9178519382697763 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10935 3.891542168160174 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCG 6318 2.2484465860481007 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGC 5944 2.1153476586688686 No Hit GAATCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTC 5233 1.8623173448543386 No Hit GCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC 1920 0.683288611144722 TruSeq Adapter, Index 14 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCT 1302 0.4633550894325145 No Hit GAATGACTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCT 1064 0.37865577200936673 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTA 1063 0.37829989252439555 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTC 911 0.3242062108087717 No Hit CTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCT 630 0.22420407553186192 TruSeq Adapter, Index 15 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC 410 0.14591058883819583 TruSeq Adapter, Index 14 (95% over 21bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGT 318 0.11316967622084456 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCAGTGTGT 316 0.11245791725090215 No Hit GAATCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTT 314 0.11174615828095974 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCC 290 0.10320505064165071 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTAT 286 0.10178153270176586 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2743830829128024 0.0 2 0.0 0.0 0.0 1.4018092913015936 0.0 3 3.558794849712094E-4 0.0 0.0 1.7025274561022656 0.0 4 3.558794849712094E-4 0.0 0.0 2.5996996377146844 0.0 5 3.558794849712094E-4 0.0 0.0 5.832864758678121 0.0 6 3.558794849712094E-4 0.0 0.0 6.517576887762728 0.0 7 3.558794849712094E-4 0.0 0.0 7.564930212032997 0.0 8 3.558794849712094E-4 0.0 0.0 8.823320070891194 0.0 9 3.558794849712094E-4 0.0 0.0 9.277778173199428 0.0 10 3.558794849712094E-4 0.0 0.0 12.725538623600505 0.0 11 3.558794849712094E-4 0.0 0.0 13.879655793362137 0.0 12 3.558794849712094E-4 0.0 0.0 17.307131113119855 0.0 13 3.558794849712094E-4 0.0 0.0 17.871555976284192 0.0 14 3.558794849712094E-4 0.0 0.0 18.173697659024747 0.0 15 3.558794849712094E-4 0.0 0.0 18.955920766991465 0.0 16 3.558794849712094E-4 0.0 0.0 19.674441447148336 0.0 17 3.558794849712094E-4 0.0 0.0 20.415026655373424 0.0 18 3.558794849712094E-4 0.0 0.0 21.234261229777147 0.0010676384549136281 19 3.558794849712094E-4 0.0 0.0 21.801889008306226 0.0010676384549136281 20 3.558794849712094E-4 0.0 0.0 22.25599123112949 0.0010676384549136281 21 3.558794849712094E-4 0.0 0.0 22.775219399702486 0.0010676384549136281 22 3.558794849712094E-4 0.0 0.0 23.30725922973444 0.0010676384549136281 23 3.558794849712094E-4 0.0 0.0 23.80940518302882 0.0010676384549136281 24 3.558794849712094E-4 0.0 0.0 24.191263870402928 0.0010676384549136281 25 3.558794849712094E-4 0.0 0.0 24.511555406877015 0.0010676384549136281 26 3.558794849712094E-4 0.0 0.0 24.832202822836074 0.0010676384549136281 27 3.558794849712094E-4 0.0 0.0 25.150714961885306 0.0010676384549136281 28 3.558794849712094E-4 0.0 0.0 25.48986811106287 0.0010676384549136281 29 3.558794849712094E-4 0.0 0.0 25.811939044961814 0.0010676384549136281 30 3.558794849712094E-4 0.0 0.0 26.206609393794885 0.0010676384549136281 31 3.558794849712094E-4 0.0 0.0 26.525121532844118 0.0010676384549136281 32 3.558794849712094E-4 0.0 0.0 26.87068051275116 0.0010676384549136281 33 3.558794849712094E-4 0.0 0.0 27.21481597471832 0.0010676384549136281 34 3.558794849712094E-4 0.0 0.0 27.53439575222247 0.0010676384549136281 35 3.558794849712094E-4 0.0 0.0 27.877819455219683 0.0010676384549136281 36 3.558794849712094E-4 0.0 0.0 28.168572994441163 0.0010676384549136281 37 3.558794849712094E-4 0.0 0.0 28.466800002847037 0.0010676384549136281 38 3.558794849712094E-4 0.0 0.0 28.786379780351183 0.0010676384549136281 39 3.558794849712094E-4 0.0 0.0 29.087097945151854 0.0010676384549136281 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCCTAA 20 7.02418E-4 45.0 25 TTGTCCG 20 7.02418E-4 45.0 25 ATTCGGC 20 7.02418E-4 45.0 17 ATCCGTC 20 7.02418E-4 45.0 6 GCGATTA 25 3.8832586E-5 45.0 9 CGTCGCG 20 7.02418E-4 45.0 15 CCCGATC 20 7.02418E-4 45.0 41 ACAACGA 30 2.159628E-6 44.999996 13 TACGAAT 30 2.159628E-6 44.999996 12 CGGGCAC 30 2.159628E-6 44.999996 6 CGAATAT 30 2.159628E-6 44.999996 14 CGTAAGG 30 2.159628E-6 44.999996 2 GCTACGA 30 2.159628E-6 44.999996 10 CACAACG 30 2.159628E-6 44.999996 12 CGTTTTT 5185 0.0 43.611378 1 AACGGGA 55 6.002665E-11 40.909092 4 TAGGCAG 45 1.9193976E-8 40.0 1 AATGATC 170 0.0 39.705883 2 CGTTCGG 40 3.4458026E-7 39.375 45 ACGGGCG 75 0.0 39.0 5 >>END_MODULE