SRR3552262_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552262_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	413668
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTC	16093	3.8903178394267863	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCG	15796	3.818521132889177	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14604	3.53036734772813	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGC	11611	2.8068402680410376	No Hit
GCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGC	5024	1.2145005173230705	No Hit
GAACTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCT	4420	1.0684897067213321	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCT	2853	0.6896835143158282	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTC	2550	0.616436369262307	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTGCCTAATCGTA	2193	0.530135277565584	No Hit
CTGAATGATACCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGC	1373	0.33190868039103827	No Hit
CTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGCT	970	0.23448756007232854	No Hit
CCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGC	968	0.2340040805670248	No Hit
CTGAATCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCT	874	0.21128054381774758	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTT	836	0.20209443321697593	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCC	644	0.155680400707814	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTGCCTAATCGT	601	0.14528559134378294	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTAT	590	0.14262645406461222	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATG	526	0.12715510989489157	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTGCCTAAT	509	0.1230455340998095	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	20	7.0280454E-4	45.0	28
CCTCAAG	20	7.0280454E-4	45.0	24
ATGCGAG	25	3.8864622E-5	45.0	1
CGGTCTA	20	7.0280454E-4	45.0	31
ATAACGC	20	7.0280454E-4	45.0	11
ACCCGTC	20	7.0280454E-4	45.0	17
CGTTTTT	7675	0.0	43.97394	1
ACAACGA	55	6.002665E-11	40.909092	13
CCTAGGG	55	6.002665E-11	40.909092	3
CACTAGG	45	1.9232175E-8	40.0	2
TACGGCT	1630	0.0	39.478527	7
CGTATTT	80	0.0	39.375	1
CTACTGG	40	3.4510776E-7	39.375	2
GTTTTTT	8655	0.0	39.33276	2
GAATCTG	1985	0.0	39.332497	1
ACGGCTG	1675	0.0	38.686565	8
CCCGTCT	70	0.0	38.571426	18
CGAATAG	35	6.2385952E-6	38.571426	26
TCGTAAC	35	6.2385952E-6	38.571426	34
GAATGAC	505	0.0	38.316833	1

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content