##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552255_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 241715 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.470719649173613 28.0 16.0 30.0 16.0 31.0 2 25.04094077736177 28.0 16.0 31.0 16.0 33.0 3 26.072581345799804 30.0 23.0 31.0 16.0 33.0 4 27.02225761744203 30.0 19.0 35.0 19.0 35.0 5 29.766137806921375 32.0 28.0 35.0 19.0 35.0 6 29.48146784436216 33.0 28.0 35.0 17.0 35.0 7 30.713931696419337 32.0 28.0 35.0 23.0 35.0 8 31.787750036199657 35.0 31.0 35.0 25.0 37.0 9 32.8510228988685 35.0 32.0 37.0 25.0 39.0 10 32.18303373807997 35.0 29.0 37.0 17.0 39.0 11 32.81964710506175 35.0 31.0 39.0 21.0 39.0 12 32.87015700308214 35.0 31.0 39.0 23.0 39.0 13 33.180290838384046 35.0 31.0 38.0 25.0 39.0 14 33.16253025257018 36.0 31.0 39.0 21.0 41.0 15 33.59611525970668 36.0 31.0 39.0 24.0 41.0 16 33.70053161781437 36.0 32.0 39.0 23.0 41.0 17 31.799561467016943 34.0 27.0 38.0 18.0 41.0 18 32.37611236373415 35.0 29.0 39.0 18.0 39.0 19 32.21444676581925 35.0 29.0 37.0 18.0 39.0 20 31.952141985396025 34.0 30.0 36.0 23.0 39.0 21 33.025211509422256 35.0 32.0 37.0 25.0 39.0 22 33.601005316178146 35.0 31.0 38.0 26.0 39.0 23 34.44017127608961 35.0 33.0 39.0 27.0 40.0 24 32.71817636472706 35.0 31.0 37.0 24.0 39.0 25 32.03670852036489 35.0 30.0 37.0 20.0 39.0 26 31.638350950499554 34.0 27.0 37.0 21.0 39.0 27 32.98791965744782 35.0 31.0 38.0 24.0 39.0 28 33.2169579877128 35.0 32.0 38.0 24.0 40.0 29 33.09183128891463 35.0 31.0 38.0 22.0 40.0 30 32.11943818132925 35.0 30.0 38.0 20.0 40.0 31 32.10737438719153 35.0 30.0 38.0 21.0 40.0 32 32.05095256810707 35.0 30.0 38.0 19.0 40.0 33 32.0130484247978 35.0 30.0 38.0 16.0 40.0 34 31.214529507891527 35.0 30.0 38.0 13.0 40.0 35 31.13002502947686 35.0 30.0 38.0 10.0 40.0 36 30.60767019009991 35.0 28.0 38.0 10.0 40.0 37 30.982024284798214 35.0 30.0 38.0 10.0 40.0 38 30.60729785077467 35.0 28.0 38.0 10.0 40.0 39 30.238326127877873 34.0 27.0 38.0 10.0 40.0 40 29.90936847113336 34.0 25.0 38.0 10.0 40.0 41 29.423242248102103 33.0 24.0 37.0 8.0 40.0 42 30.621318494921706 35.0 28.0 38.0 10.0 40.0 43 30.565943363051527 35.0 28.0 38.0 9.0 40.0 44 30.86174627143537 35.0 29.0 38.0 10.0 40.0 45 31.143946383137166 35.0 29.0 38.0 10.0 40.0 46 30.974076908756178 35.0 29.0 38.0 10.0 40.0 47 30.824785387750037 35.0 28.0 38.0 10.0 40.0 48 30.751902033386425 35.0 29.0 38.0 10.0 40.0 49 30.94436836770577 35.0 29.0 38.0 10.0 40.0 50 30.920220093912253 35.0 29.0 38.0 10.0 40.0 51 29.490577746519662 33.0 26.0 37.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 16.0 10 19.0 11 13.0 12 26.0 13 26.0 14 43.0 15 81.0 16 129.0 17 305.0 18 664.0 19 1011.0 20 1628.0 21 2449.0 22 3632.0 23 4910.0 24 7101.0 25 9106.0 26 10829.0 27 11114.0 28 11670.0 29 13388.0 30 16142.0 31 19729.0 32 24253.0 33 29271.0 34 32380.0 35 26214.0 36 12348.0 37 3002.0 38 213.0 39 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.03640651180109 9.922429307242 12.99877955443394 37.042384626522974 2 39.03109033365741 27.761620089775146 16.750305111391516 16.456984465175932 3 21.608092174668514 26.00831557826366 38.27648263450758 14.107109612560246 4 19.83823924870198 15.974598183811514 49.84796144219432 14.339201125292183 5 27.54855925366651 17.634404153652028 38.43782967544422 16.379206917237244 6 17.324535092981403 29.00481972571003 39.5656041205552 14.105041060753368 7 49.404877645160624 3.8863951347661505 41.73303270380407 4.97569451626916 8 46.67314812899489 13.996648946072854 31.092402209213333 8.237800715718926 9 42.41937819332685 5.050989802039592 31.673251556585235 20.85638044804832 10 29.29400326831185 17.10775086362038 37.886353763730014 15.711892104337752 11 25.01996152493639 16.600541960573402 41.68711085369133 16.692385660798877 12 20.141075233229216 13.153093519227188 45.73319818794862 20.972633059594976 13 19.664480896924065 15.80952774962249 50.44494549365989 14.081045859793559 14 16.517386177936828 21.76281984982314 41.309807004116415 20.40998696812362 15 12.703804066772854 17.330740748402043 52.329396189727575 17.63605899509753 16 14.371056823118137 18.570630701445918 40.80466665287632 26.253645822559623 17 14.634590323314647 18.884223155368925 46.27515876135118 20.20602775996525 18 15.409056119810522 17.53387253583766 45.08201807914279 21.975053265209027 19 15.457460232091513 20.743437519392675 41.332147363630725 22.466954884885094 20 17.169807417826778 18.973584593426143 48.40866309496722 15.447944893779864 21 17.73162608857539 24.13503506195313 41.15590674968455 16.97743209978694 22 14.946941646153528 16.957987712802268 44.21364003061456 23.88143061042964 23 16.10119355439257 23.605485799391847 42.63161160871274 17.661709037502842 24 19.10597190906646 17.328672196595164 39.894917568210495 23.670438326127876 25 14.52578449827276 25.614463314233703 38.829613387667294 21.030138799826243 26 16.786297912831227 17.056450778809758 43.427176633638794 22.73007467472023 27 18.688538154438078 19.035227437271164 38.75928262623338 23.516951782057383 28 14.783112343048632 18.917319984279008 44.32492811782471 21.974639554847652 29 22.27499327720663 15.591502389177336 38.4605837453199 23.672920588296133 30 16.147529114866682 20.16341559274352 41.65732370767226 22.03173158471754 31 19.147342945204063 18.102310572368285 35.60887822435513 27.14146825807252 32 19.59249529404464 20.62387522495501 37.80568024326169 21.97794923773866 33 15.314730157416792 18.358810996421404 38.98103137993091 27.34542746623089 34 22.945617772997124 22.389177336946403 35.130629046604476 19.534575843452 35 15.6903791655462 19.68268415282461 37.13753800963946 27.48939867198974 36 20.825765881306495 19.709575326314045 36.137600066193656 23.327058726185797 37 16.81401650704342 20.893200670210785 35.778085762157914 26.51469706058788 38 17.85242951409718 21.430196719276832 35.74457522288646 24.97279854373953 39 20.874997414310243 22.502120265602052 33.95031338559874 22.672568934488964 40 18.509815278323646 19.955732991332766 41.77523116066442 19.75922056967917 41 17.33818753490681 25.224334443456137 35.81738824648863 21.62008977514842 42 18.36336181039654 19.79438595039613 40.65448979169683 21.187762447510497 43 21.499286349626626 18.705500279254494 36.20875824835033 23.586455122768548 44 20.441428955588194 19.80266015762365 34.911776265436565 24.84413462135159 45 18.224355128974203 17.607926690523964 35.91667873321887 28.251039447282956 46 23.37339428665991 21.228719773286723 34.846823738700536 20.55106220135283 47 15.547235380510106 18.352605341000768 45.21730136731274 20.882857911176387 48 19.414186128291583 21.45874273421178 34.39463831371657 24.73243282378007 49 17.28771487081894 17.315019754669756 42.65105599569741 22.74620937881389 50 19.490722545146145 16.43547152638438 38.878431210309664 25.19537471815982 51 19.05674037606272 17.0125974805039 35.27377283164057 28.656889311792817 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 40.0 1 229.5 2 419.0 3 8671.5 4 16924.0 5 11455.5 6 5987.0 7 5496.0 8 5005.0 9 4777.5 10 4550.0 11 4286.0 12 4022.0 13 3735.5 14 3449.0 15 3193.0 16 2937.0 17 2675.0 18 2413.0 19 2174.0 20 1935.0 21 1813.0 22 1691.0 23 1597.5 24 1504.0 25 1512.0 26 1530.0 27 1540.0 28 1658.5 29 1777.0 30 1907.5 31 2038.0 32 2228.0 33 2418.0 34 2695.0 35 2972.0 36 3125.0 37 3278.0 38 3607.0 39 3936.0 40 4360.5 41 4785.0 42 5587.0 43 6389.0 44 7867.0 45 9345.0 46 24770.5 47 40196.0 48 30542.5 49 20889.0 50 20081.0 51 19273.0 52 15914.0 53 12555.0 54 11166.5 55 9778.0 56 9090.0 57 8402.0 58 7828.5 59 7255.0 60 7022.0 61 6789.0 62 6365.5 63 5942.0 64 5464.5 65 4987.0 66 4402.5 67 3818.0 68 3368.5 69 2919.0 70 2615.0 71 2311.0 72 2090.0 73 1869.0 74 1632.5 75 1170.0 76 944.0 77 835.0 78 726.0 79 553.5 80 381.0 81 295.0 82 209.0 83 167.5 84 126.0 85 86.5 86 47.0 87 31.0 88 15.0 89 9.0 90 3.0 91 2.5 92 2.0 93 4.5 94 7.0 95 4.0 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 241715.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.104864766922105 #Duplication Level Percentage of deduplicated Percentage of total 1 76.84438555850134 36.197443898304286 2 10.976116325569468 10.340569503639115 3 4.840958685134747 6.840981126165879 4 2.7394672763408408 5.16168942341775 5 1.5328608613023476 3.6102601789077413 6 0.9917650489996361 2.8030175108212645 7 0.6094521341175756 2.0095712251664333 8 0.38213274418802323 1.4400248990391737 9 0.22629972189786873 0.9593836017112068 >10 0.764255479589933 6.202778802634484 >50 0.04863443068335313 1.5938245750473934 >100 0.031761260854434696 2.939388413999109 >500 0.0019850788034021685 0.5788075165469854 >1k 0.005955236410206505 4.715083848446161 >5k 0.0029776182051032525 9.818688735866914 >10k+ 9.925394017010843E-4 4.7884867402861255 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10242 4.237221521212999 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCG 8374 3.4644105661626297 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGC 6381 2.6398858159402603 No Hit GAATCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTC 6246 2.5840349171545003 RNA PCR Primer, Index 27 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCTGC 2824 1.1683180605258259 Illumina PCR Primer Index 6 (95% over 22bp) GAACTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCT 1933 0.7997021285398093 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCCCTATTTCGTA 1636 0.6768301512111371 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCCCTATTT 1446 0.5982251825496969 No Hit GAATGACTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCT 1175 0.4861096746168008 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTC 1071 0.4430837970336967 No Hit CCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCTGC 628 0.2598101069441284 RNA PCR Primer, Index 27 (95% over 24bp) CTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCTGCT 610 0.2523633204393604 RNA PCR Primer, Index 27 (96% over 25bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGCCCTATTTCGT 387 0.16010590985251225 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCC 384 0.15886477876838426 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATG 379 0.15679622696150425 No Hit GAATCTTTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTC 352 0.14562604720435224 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTAT 342 0.14148894359059222 No Hit GAACTGTCCCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCT 325 0.13445586744720023 RNA PCR Primer, Index 27 (95% over 22bp) GAATGCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTT 278 0.11501148046252818 No Hit TCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCTGC 270 0.11170179757152018 Illumina PCR Primer Index 6 (95% over 22bp) GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGCCCTATT 256 0.10590985251225617 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.29456177729971245 0.0 2 0.0 0.0 0.0 2.021388825683139 0.0 3 0.0 0.0 0.0 2.336222410690276 0.0 4 0.0 0.0 0.0 3.686159319860166 0.0 5 0.0 0.0 0.0 7.389694474898124 0.0 6 0.0 0.0 0.0 8.122375524895022 0.0 7 0.0 0.0 0.0 9.316757338187536 0.0 8 0.0 0.0 0.0 10.73123306373208 0.0 9 0.0 0.0 0.0 11.232650021719794 0.0 10 0.0 0.0 0.0 15.771466396375898 0.0 11 0.0 0.0 0.0 16.877727902695323 0.0 12 0.0 0.0 0.0 20.95898061766957 0.0 13 0.0 0.0 0.0 21.58037358045632 0.0 14 0.0 0.0 0.0 21.93657820160106 0.0 15 0.0 0.0 0.0 23.006433196119396 0.0 16 0.0 0.0 0.0 23.70146660323108 0.0 17 0.0 0.0 0.0 24.44490412262375 0.0 18 0.0 0.0 0.0 25.231781229960905 0.0 19 0.0 0.0 0.0 26.301636224479243 0.0 20 0.0 0.0 0.0 26.869246840287115 0.0 21 0.0 0.0 0.0 27.31357176840494 0.0 22 0.0 0.0 0.0 27.94365264878059 0.0 23 0.0 0.0 0.0 28.36150011377035 0.0 24 0.0 0.0 0.0 28.680884512752623 0.0 25 0.0 0.0 0.0 28.974205158968207 0.0 26 0.0 0.0 0.0 29.260492729040397 0.0 27 0.0 0.0 0.0 29.6018037771756 0.0 28 0.0 0.0 0.0 29.854994518337712 0.0 29 0.0 0.0 0.0 30.112322363113584 0.0 30 0.0 0.0 0.0 30.43460273462549 0.0 31 0.0 0.0 0.0 30.71261609747016 0.0 32 0.0 0.0 0.0 30.9980762468196 0.0 33 4.1371036137600065E-4 0.0 0.0 31.28146784436216 0.0 34 4.1371036137600065E-4 0.0 0.0 31.533831164801523 0.0 35 4.1371036137600065E-4 0.0 0.0 31.806880003309683 0.0 36 4.1371036137600065E-4 0.0 0.0 32.06627639989244 0.0 37 4.1371036137600065E-4 0.0 0.0 32.32401795502968 0.0 38 4.1371036137600065E-4 0.0 0.0 32.606168421488114 0.0 39 4.1371036137600065E-4 0.0 0.0 32.88376807397141 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATTAGG 20 7.022221E-4 45.000004 2 TTGCATG 20 7.022221E-4 45.000004 1 GTTATAC 20 7.022221E-4 45.000004 33 TTGGGTA 20 7.022221E-4 45.000004 5 CTAGCGG 35 1.2066084E-7 45.000004 2 TGACCAT 25 3.881638E-5 45.0 21 ATGACTC 50 2.1827873E-11 45.0 3 CTTTAGG 25 3.881638E-5 45.0 2 TATACAG 50 2.1827873E-11 45.0 27 ATACAGA 45 3.8198777E-10 45.0 28 CGTTTTT 4800 0.0 44.39063 1 TAGGGAT 65 0.0 41.538464 5 ATGGGAC 60 3.6379788E-12 41.250004 5 TAGCATA 60 3.6379788E-12 41.250004 30 GTAGCAT 60 3.6379788E-12 41.250004 29 CAGTAGC 60 3.6379788E-12 41.250004 27 AAGGGCG 55 6.002665E-11 40.909092 5 CGTGTTT 50 1.0732037E-9 40.5 1 TGTAAGG 50 1.0732037E-9 40.5 2 TACCGGG 50 1.0732037E-9 40.5 3 >>END_MODULE