##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552243_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 504959 Sequences flagged as poor quality 0 Sequence length 51 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.139242988044575 28.0 16.0 31.0 16.0 33.0 2 26.640873813517533 30.0 25.0 31.0 16.0 33.0 3 27.30603474737553 31.0 25.0 33.0 16.0 33.0 4 28.123948677021303 28.0 19.0 35.0 19.0 37.0 5 31.23570428490234 33.0 28.0 35.0 19.0 37.0 6 30.311651044936323 35.0 28.0 35.0 17.0 37.0 7 32.81525034705788 35.0 32.0 35.0 28.0 37.0 8 33.727316475198975 35.0 33.0 37.0 31.0 37.0 9 34.91497923593797 37.0 34.0 39.0 28.0 39.0 10 34.60112603201448 37.0 32.0 39.0 27.0 39.0 11 34.87913672199129 37.0 34.0 39.0 27.0 39.0 12 34.93525612970558 37.0 34.0 39.0 27.0 39.0 13 35.246926978229915 37.0 34.0 39.0 30.0 39.0 14 35.50095948383928 38.0 34.0 40.0 27.0 41.0 15 36.09537407987579 38.0 34.0 40.0 27.0 41.0 16 35.82574624870534 38.0 34.0 40.0 27.0 41.0 17 34.943791476139644 37.0 32.0 40.0 26.0 41.0 18 34.968767761343 38.0 33.0 39.0 27.0 40.0 19 34.34347343051614 37.0 32.0 39.0 25.0 40.0 20 34.91596149390347 35.0 34.0 39.0 30.0 40.0 21 35.02438811863934 36.0 34.0 39.0 29.0 40.0 22 35.68689933242105 37.0 34.0 39.0 30.0 40.0 23 36.380624961630545 37.0 35.0 40.0 32.0 40.0 24 35.3328626680582 36.0 34.0 39.0 30.0 40.0 25 34.17610142605637 35.0 33.0 39.0 25.0 40.0 26 34.56525183232698 35.0 33.0 39.0 27.0 40.0 27 35.42661087335804 36.0 34.0 39.0 30.0 40.0 28 35.711984537358475 37.0 35.0 39.0 31.0 40.0 29 35.797464744662435 37.0 35.0 40.0 31.0 41.0 30 34.542170750496574 36.0 33.0 39.0 25.0 40.0 31 34.24730324640218 35.0 33.0 39.0 25.0 40.0 32 34.11285470701582 36.0 33.0 39.0 23.0 40.0 33 33.89913636552671 37.0 33.0 40.0 20.0 40.0 34 33.4432993569775 37.0 33.0 40.0 15.0 41.0 35 33.217100794321915 38.0 33.0 40.0 12.0 41.0 36 32.79043051019984 37.0 33.0 40.0 10.0 41.0 37 32.82311831257587 37.0 33.0 40.0 10.0 41.0 38 32.35162854806034 37.0 31.0 40.0 10.0 41.0 39 32.299455995437256 37.0 32.0 40.0 10.0 40.0 40 32.00504991494359 36.0 31.0 40.0 10.0 40.0 41 31.683817894126058 35.0 30.0 39.0 10.0 40.0 42 32.12048899019524 37.0 31.0 40.0 10.0 40.0 43 31.9701757964508 36.0 31.0 40.0 10.0 40.0 44 32.09321944949986 37.0 31.0 40.0 10.0 40.0 45 32.13991234931945 37.0 31.0 40.0 10.0 40.0 46 32.02973112668553 36.0 31.0 40.0 10.0 40.0 47 32.15927233696201 36.0 31.0 40.0 10.0 41.0 48 31.968637057662107 36.0 31.0 40.0 10.0 40.0 49 31.99276772965726 36.0 31.0 40.0 10.0 40.0 50 32.055156953336805 36.0 31.0 40.0 10.0 41.0 51 30.879336738230233 35.0 28.0 39.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 6.0 9 12.0 10 22.0 11 27.0 12 27.0 13 37.0 14 46.0 15 72.0 16 156.0 17 274.0 18 500.0 19 921.0 20 1566.0 21 2417.0 22 3845.0 23 6021.0 24 9559.0 25 15342.0 26 19586.0 27 20254.0 28 18163.0 29 16964.0 30 18384.0 31 22479.0 32 28022.0 33 36055.0 34 50489.0 35 75671.0 36 79597.0 37 59751.0 38 17887.0 39 807.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.510956335068784 15.73533692834468 19.662190395655884 32.091516340930646 2 49.475700007327326 16.255379149594322 18.974015712166732 15.294905130911618 3 26.09043506502508 15.52858746947772 43.18509027465596 15.195887190841237 4 22.231111832841872 19.472670058361174 42.45711037925851 15.839107729538437 5 19.937262233171406 21.829891139676686 41.770321946930345 16.462524680221563 6 20.061628765899805 23.270602167700744 42.21788303604847 14.449886030350978 7 58.772098328775215 4.397188682645522 32.03210557688842 4.79860741169085 8 58.09719204925548 4.268663396434166 31.29085727752154 6.343287276788809 9 52.05828592024303 5.605603623264463 33.783336864973194 8.55277359151931 10 27.36123130788836 19.031842189167833 39.1865478187338 14.420378684210005 11 21.106862141282758 19.065904360552043 43.51798858917258 16.30924490899261 12 18.897573862432395 16.139330123831837 48.12351101772619 16.839584996009577 13 18.45021080919441 16.841367318930843 49.534516663729136 15.17390520814561 14 15.710978515087366 18.827865232622848 48.13341281173323 17.32774344055656 15 14.508504650872645 18.50229424567143 50.31735249792557 16.67184860553035 16 16.789679954214105 19.321568681813773 46.44357264649209 17.445178717480033 17 16.864141445147034 19.008473955311224 44.99612839854325 19.131256200998497 18 18.06681334524189 18.597747539899277 45.61301016518173 17.722428949677102 19 17.113864690004537 20.95298826241338 44.21962971251131 17.71351733507077 20 17.33249630167994 21.328662327040412 44.29884406456762 17.039997306712028 21 16.722149719086104 21.74255731653461 44.55846910343216 16.97682386094713 22 16.06229416645708 19.100956711336963 44.395881645836596 20.440867476369366 23 15.490960652250973 21.137161630944295 44.57866876320652 18.79320895359821 24 16.530252951229706 19.851710732950593 44.21626310254892 19.401773213270783 25 16.888301822524205 20.100641834287536 43.064684459530376 19.946371883657882 26 16.105862060088047 19.429498236490485 44.20477702150076 20.25986268192071 27 17.282789295764605 18.64765258169475 43.75741396826277 20.312144154277874 28 15.773557853211845 19.154822470735247 44.33627284591422 20.735346830138685 29 17.24496444265772 18.74330391180274 43.40807867569446 20.603652969845076 30 18.500907994510445 17.748569685855685 42.95319025901112 20.797332060622743 31 17.70896250982753 19.486730605851168 41.06551224950937 21.738794634811935 32 17.42834566766807 19.451876290946394 41.71685225929234 21.4029257820932 33 18.02007687752867 19.65327878104955 39.32834150891458 22.998302832507196 34 17.881055689669854 21.24291279093946 39.50261308343846 21.373418435952228 35 16.87740984911646 21.827514709114997 38.06566473713707 23.229410704631466 36 19.143534425567225 21.619775070847336 37.26975853485134 21.966931968734098 37 18.4418933022285 23.356153667921554 36.53484738364897 21.66710564620098 38 19.390881239863038 23.05216859190548 35.77934050091196 21.777609667319524 39 20.412350309629097 21.61363595856297 36.43622551533887 21.53778821646906 40 21.42411562126826 21.972278937497897 36.95824809538992 19.64535734584392 41 18.711420135100077 23.18406048807923 36.38889493998523 21.715624436835466 42 19.200370723167623 22.55410835335146 37.01587653651088 21.22964438697003 43 19.553270661578466 20.72900968197418 38.00011486081048 21.717604795636873 44 20.17173671525807 21.702356032866035 35.71200830166409 22.4138989502118 45 19.849136266508765 20.639695500030694 35.89915220839712 23.61201602506342 46 20.608603866848597 20.64345818175337 36.08609807925 22.661839872148036 47 18.223261690553095 21.342524838650267 38.57560712849954 21.858606342297097 48 18.166227357072554 20.89001285252862 37.51670927738688 23.42705051301195 49 19.032040225047975 19.908745066431134 38.56966605209532 22.48954865642557 50 17.729756277242313 19.050457561901066 39.40755586097089 23.812230299885734 51 17.84857780532677 18.799348065882576 37.3735293360451 25.978544792745552 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 121.0 1 392.5 2 664.0 3 18389.0 4 36114.0 5 23923.0 6 11732.0 7 11232.0 8 10732.0 9 10440.0 10 10148.0 11 9729.5 12 9311.0 13 8730.5 14 8150.0 15 7563.0 16 6976.0 17 6400.0 18 5824.0 19 5295.0 20 4766.0 21 4463.0 22 4160.0 23 4024.5 24 3889.0 25 4078.5 26 4421.5 27 4575.0 28 4922.5 29 5270.0 30 5755.5 31 6241.0 32 6670.0 33 7099.0 34 7918.0 35 8737.0 36 9302.0 37 9867.0 38 10601.0 39 11335.0 40 12342.0 41 13349.0 42 15353.0 43 17357.0 44 20120.0 45 22883.0 46 32453.0 47 42023.0 48 44618.0 49 47213.0 50 46317.5 51 45422.0 52 39349.0 53 33276.0 54 28823.0 55 24370.0 56 21772.5 57 19175.0 58 17565.0 59 15955.0 60 14660.0 61 13365.0 62 12103.0 63 10841.0 64 9883.5 65 8926.0 66 7750.5 67 6575.0 68 5574.0 69 4573.0 70 3964.5 71 3356.0 72 2925.5 73 2495.0 74 2124.5 75 1373.5 76 993.0 77 767.0 78 541.0 79 421.5 80 302.0 81 219.5 82 137.0 83 96.5 84 56.0 85 36.5 86 17.0 87 15.0 88 13.0 89 11.5 90 10.0 91 6.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 504959.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.12431795389784 #Duplication Level Percentage of deduplicated Percentage of total 1 78.05132240743362 42.24474590702127 2 9.414408431373445 10.19096870575026 3 4.4022548209601515 7.148071189311804 4 2.736186284132968 5.92376865694028 5 1.7972934799197162 4.86386418818211 6 1.161976285529416 3.773470435972998 7 0.747979285281278 2.83387080616452 8 0.4885450780418907 2.11537353110009 9 0.285956211314946 1.3929466411891922 >10 0.826524837151588 7.399817399007561 >50 0.06121281790111349 2.282626892525807 >100 0.020404272574555352 2.260539540668709 >500 0.003709867740828246 1.4188108362377951 >1k 0.001854933870414123 1.6545430640531322 >5k 0.0 0.0 >10k+ 3.709867740828246E-4 4.496582205874495 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22394 4.434815499872267 No Hit GAATCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTC 2206 0.4368671515905252 No Hit GCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC 1613 0.31943187466705214 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCG 1593 0.3154711570642369 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCC 1435 0.2841814880019962 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGC 1393 0.2758639810360841 No Hit CTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGCT 987 0.195461413698934 No Hit GAACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCT 910 0.18021265092809513 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTT 766 0.15169548418782514 No Hit CCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC 721 0.14278386958149078 No Hit CGTTCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTC 697 0.13803100845811245 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGC 640 0.1267429632900889 No Hit CGCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTG 612 0.1211979586461475 No Hit CGTCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCT 604 0.11961367160502138 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCT 596 0.11802938456389529 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCG 533 0.10555312411502715 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.21031410470949127 0.0 2 0.0 0.0 0.0 0.8650207244548568 0.0 3 0.0 0.0 0.0 1.330405042785652 0.0 4 0.0 0.0 0.0 2.257014925964286 0.0 5 0.0 0.0 0.0 4.229254256286154 0.0 6 0.0 0.0 0.0 5.888794931865755 0.0 7 0.0 0.0 0.0 7.37782671464416 0.0 8 0.0 0.0 0.0 9.41046698840896 0.0 9 0.0 0.0 0.0 10.671163401385064 0.0 10 0.0 0.0 0.0 12.685980445937195 0.0 11 0.0 0.0 0.0 14.513851619636446 0.0 12 0.0 0.0 0.0 16.178739263979846 0.0 13 0.0 0.0 0.0 16.911670056380814 0.0 14 0.0 0.0 0.0 17.235062648650683 0.0 15 0.0 0.0 0.0 17.7010410746219 0.0 16 0.0 0.0 0.0 18.32346784590432 0.0 17 0.0 0.0 0.0 19.12115637111132 0.0 18 0.0 0.0 0.0 20.113118094736404 0.0 19 0.0 0.0 0.0 20.64365621763351 0.0 20 0.0 0.0 0.0 21.18746274450005 0.0 21 0.0 0.0 0.0 21.720575333838983 0.0 22 0.0 0.0 0.0 22.2895324174834 0.0 23 0.0 0.0 0.0 22.807000172291215 0.0 24 0.0 0.0 0.0 23.245649646803006 0.0 25 0.0 0.0 0.0 23.646672304088053 0.0 26 0.0 0.0 0.0 24.004127067742132 0.0 27 0.0 0.0 0.0 24.42356706188027 0.0 28 0.0 0.0 0.0 24.79349808598322 0.0 29 0.0 0.0 0.0 25.188579666864044 0.0 30 0.0 0.0 0.0 25.648022908790615 0.0 31 0.0 0.0 0.0 26.044688776712565 0.0 32 0.0 0.0 0.0 26.46868359609394 0.0 33 0.0 0.0 0.0 26.860596602892514 0.0 34 0.0 0.0 0.0 27.245578353886156 0.0 35 0.0 0.0 0.0 27.6509578005343 0.0 36 0.0 0.0 0.0 28.017918286435137 0.0 37 0.0 0.0 0.0 28.395770745743715 0.0 38 0.0 0.0 0.0 28.80728930467622 0.0 39 0.0 0.0 0.0 29.3877324693688 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATTGCG 20 7.029525E-4 45.000004 1 TAGTACG 20 7.029525E-4 45.000004 1 GACGTTG 25 3.887688E-5 45.0 1 ATTACGG 35 1.2101191E-7 45.0 2 CGTTTTT 11655 0.0 44.382236 1 CGAGACA 170 0.0 39.705883 22 GTTTTTT 13105 0.0 39.60893 2 TGGCTAG 40 3.4530785E-7 39.375004 1 GCGAGAC 175 0.0 38.571426 21 TGCGATG 35 6.2413346E-6 38.571426 1 AACACGT 135 0.0 38.333332 41 TACGGGA 100 0.0 38.25 4 AATGGGC 130 0.0 38.07692 4 CACGTGA 130 0.0 38.07692 43 GTGCAAG 95 0.0 37.894737 1 AAACACG 155 0.0 37.74194 40 GTCAAGC 185 0.0 37.7027 16 TTGTGCG 30 1.1390155E-4 37.500004 1 TGCCACG 30 1.1390155E-4 37.500004 1 GCAAACG 30 1.1390155E-4 37.500004 1 >>END_MODULE