SRR3552232_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552232_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	380832
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12167	3.1948470716746495	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTTC	9795	2.572000252079657	RNA PCR Primer, Index 41 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCG	8465	2.2227648937064113	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGC	6834	1.7944920594907992	No Hit
GCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTTCTGC	2577	0.6766763297201916	Illumina PCR Primer Index 3 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTTCT	2467	0.6477922023359381	TruSeq Adapter, Index 11 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCT	1879	0.4933934123182926	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTC	1745	0.4582072935047475	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGACATGTCGTA	1248	0.3277035543231661	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCC	888	0.23317368288379128	No Hit
CTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTTCTGCT	790	0.20744055121418367	RNA PCR Primer, Index 41 (96% over 25bp)
GAATGCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTT	590	0.15492395597008654	No Hit
CCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTTCTGC	560	0.14704646668347196	RNA PCR Primer, Index 41 (95% over 24bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGACATGT	398	0.1045080245357533	No Hit
TCTGTCTCTTATACACATCTGACGCGTGACATGTCGTATGCCGTCTTCTGC	382	0.10030669691622554	Illumina PCR Primer Index 3 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATC	20	7.0273393E-4	45.0	6
ATAGCGG	40	6.7939254E-9	45.0	2
TAACGCC	20	7.0273393E-4	45.0	12
ATCACGG	20	7.0273393E-4	45.0	2
CTAACGG	20	7.0273393E-4	45.0	2
CCCCGTC	20	7.0273393E-4	45.0	17
GACGGAA	25	3.8858765E-5	45.0	4
GCTACGA	25	3.8858765E-5	45.0	10
GATAGCG	20	7.0273393E-4	45.0	1
TTCGTAC	30	2.1616652E-6	44.999996	40
AATTCGT	30	2.1616652E-6	44.999996	38
CGTTTTT	5960	0.0	44.09396	1
CATGGGA	175	0.0	42.42857	4
AACACGT	55	6.002665E-11	40.90909	41
TGCACGG	45	1.9224899E-8	40.0	2
CATGCGG	40	3.4501136E-7	39.375	2
ACGGGTA	40	3.4501136E-7	39.375	5
CTCGATC	40	3.4501136E-7	39.375	16
TACGGCT	1000	0.0	39.149998	7
ACGGCTG	1015	0.0	38.571426	8