SRR3552228_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552228_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	262437
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5907	2.2508259125047156	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCG	4813	1.8339639608744196	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTC	4231	1.6121964509577535	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGC	3532	1.3458468127588716	No Hit
GCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	1516	0.5776624485114522	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCT	1020	0.38866470810137294	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCC	969	0.36923147269630424	No Hit
GAACTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCT	943	0.35932433307803396	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTC	789	0.3006435830313561	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTGCTGATCGTA	769	0.2930227064019174	No Hit
CTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGCT	669	0.25491832325472397	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	579	0.2206243784222499	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	354	0.13488951634106472	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGC	303	0.11545628093599605	No Hit
TCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	283	0.10783540430655739	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	280	0.1066922728121416	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCG	273	0.10402496599183804	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGCTAT	20	7.0233265E-4	45.000004	10
GATAATC	30	2.1590786E-6	45.000004	26
CACGGGT	20	7.0233265E-4	45.000004	4
CCGGACG	20	7.0233265E-4	45.000004	1
ACGGGTA	20	7.0233265E-4	45.000004	5
TAGATCA	20	7.0233265E-4	45.000004	44
ACCCGTC	20	7.0233265E-4	45.000004	17
GTAAGCG	20	7.0233265E-4	45.000004	1
GATCCGG	25	3.882553E-5	45.0	2
TTTGCGC	35	1.207136E-7	45.0	13
GCGGACT	25	3.882553E-5	45.0	25
TGCGTAG	35	1.207136E-7	45.0	1
CGTTTTT	2870	0.0	43.432053	1
ATGGGAC	70	0.0	41.785713	5
TACGAAT	55	6.002665E-11	40.90909	12
GCTACGA	55	6.002665E-11	40.90909	10
TACGGCT	450	0.0	40.500004	7
GAATATA	50	1.0750227E-9	40.5	15
TAAGTAG	50	1.0750227E-9	40.5	1
CGAATAT	50	1.0750227E-9	40.5	14