##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552225_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 265595 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.411799920932246 28.0 16.0 31.0 16.0 33.0 2 26.632206931606394 30.0 25.0 33.0 16.0 33.0 3 27.11297652440746 31.0 25.0 33.0 16.0 34.0 4 29.38111033716749 32.0 28.0 35.0 19.0 37.0 5 32.15102317438205 33.0 32.0 35.0 28.0 37.0 6 31.020147216626818 35.0 30.0 35.0 17.0 37.0 7 33.3765997100849 35.0 32.0 35.0 28.0 37.0 8 33.65712456936313 35.0 35.0 37.0 30.0 37.0 9 35.351923040719896 37.0 34.0 39.0 30.0 39.0 10 35.3878800429225 37.0 34.0 39.0 30.0 39.0 11 35.62371656092923 37.0 35.0 39.0 30.0 39.0 12 35.28233588734728 37.0 34.0 39.0 27.0 39.0 13 35.488100303093056 37.0 34.0 39.0 30.0 39.0 14 35.363662719554206 38.0 34.0 40.0 27.0 41.0 15 36.11290875204729 38.0 34.0 40.0 29.0 41.0 16 35.63523033189631 38.0 33.0 40.0 27.0 41.0 17 35.64797906587097 37.0 34.0 40.0 29.0 41.0 18 35.37664865678947 38.0 34.0 39.0 27.0 40.0 19 34.59254880551215 37.0 32.0 39.0 27.0 40.0 20 35.33749882339652 35.0 34.0 39.0 30.0 40.0 21 35.55842918729645 37.0 34.0 39.0 30.0 40.0 22 36.19465727893974 37.0 35.0 39.0 31.0 40.0 23 36.698243566332195 38.0 35.0 40.0 33.0 41.0 24 36.605899960466125 38.0 35.0 40.0 33.0 41.0 25 34.8278054933263 36.0 34.0 39.0 27.0 41.0 26 35.44678551930571 37.0 34.0 39.0 30.0 41.0 27 36.09641747773866 37.0 35.0 40.0 31.0 41.0 28 36.162393870366536 38.0 35.0 40.0 31.0 41.0 29 36.236947231687346 38.0 35.0 40.0 31.0 41.0 30 35.22388599182967 37.0 34.0 40.0 28.0 41.0 31 34.9608765225249 36.0 34.0 40.0 27.0 41.0 32 34.748617255595924 37.0 34.0 40.0 25.0 41.0 33 34.57021404770421 38.0 34.0 40.0 22.0 41.0 34 34.31346599145315 38.0 34.0 40.0 18.0 41.0 35 34.08241495510081 38.0 34.0 40.0 15.0 41.0 36 33.783840057229995 38.0 34.0 40.0 15.0 41.0 37 33.86322408177865 38.0 34.0 40.0 15.0 41.0 38 33.41126903744423 37.0 33.0 40.0 15.0 41.0 39 33.38551930570982 38.0 33.0 40.0 12.0 41.0 40 33.10683183041849 37.0 33.0 40.0 10.0 41.0 41 32.79194261940172 37.0 32.0 40.0 10.0 41.0 42 33.18914136184792 38.0 33.0 40.0 10.0 41.0 43 33.09660949942582 38.0 33.0 40.0 10.0 41.0 44 33.15522882584386 38.0 33.0 40.0 10.0 41.0 45 33.157137747322054 38.0 33.0 40.0 10.0 41.0 46 33.03177394152751 38.0 33.0 40.0 10.0 41.0 47 33.0160131026563 38.0 33.0 40.0 10.0 41.0 48 32.97549276153542 37.0 33.0 40.0 10.0 41.0 49 33.05370583030554 38.0 33.0 40.0 10.0 41.0 50 33.04131101865622 37.0 33.0 40.0 10.0 41.0 51 31.986524595719047 36.0 31.0 40.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 4.0 10 13.0 11 11.0 12 19.0 13 11.0 14 18.0 15 35.0 16 50.0 17 142.0 18 277.0 19 549.0 20 909.0 21 1341.0 22 1839.0 23 2879.0 24 4272.0 25 6710.0 26 8420.0 27 8518.0 28 7581.0 29 7291.0 30 8073.0 31 10249.0 32 13651.0 33 17193.0 34 21035.0 35 33265.0 36 43377.0 37 44899.0 38 21351.0 39 1609.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.350081891601874 16.39601649127431 19.29102580997383 27.962875807149985 2 43.291101112596245 20.274478058698396 19.914908036672376 16.519512792032984 3 24.54488977578644 18.892298424292626 40.58020670569852 15.982605094222407 4 23.44547148854459 19.25337449876692 41.4940040286903 15.807149983998192 5 21.249270505845367 22.85321636325985 38.65471865057701 17.242794480317777 6 19.089967808128918 24.898059074907284 40.67621754927615 15.335755567687645 7 58.32225757261996 5.066736949114253 31.03258720984958 5.578418268416198 8 56.32109038197255 6.92821777518402 28.243378075641484 8.507313767201943 9 51.128221540315145 6.542291835313165 31.391027692539392 10.938458931832301 10 28.912065362676252 20.113330446732807 37.17313955458499 13.80146463600595 11 21.686402228957625 21.002277904328018 40.385549426758786 16.92577043995557 12 19.43937197612907 17.123816336903932 46.01630301775259 17.420508669214403 13 19.039891564223723 20.87275739377624 46.38754494625275 13.699806095747286 14 14.866243716937442 25.21545962838156 42.11863928161298 17.79965737306802 15 12.382010203505336 20.617858016905437 50.20275231084923 16.797379468739997 16 12.975394868126283 21.863739904742182 44.46506899602778 20.695796231103746 17 14.028878555695702 21.13518703288842 42.31103748188031 22.524896929535572 18 14.373388053238953 20.009789340913798 46.64959807225287 18.967224533594383 19 15.54547337111015 22.025264029819837 42.09190685065607 20.337355748413938 20 16.992036747679737 22.480844895423484 44.081025621717274 16.4460927351795 21 16.22620907773113 23.95564675539826 42.78243189819085 17.035712268679756 22 13.889568704230124 22.067056985259512 40.58698394171577 23.456390368794594 23 13.513432105273065 23.715431389898153 42.02789962160432 20.74323688322446 24 16.902803140119353 20.38027824318982 41.11560835106083 21.60131026563 25 13.258532728402267 23.25947401118244 40.71688096537962 22.765112295035674 26 13.622997420885183 21.642726707957603 41.8452907622508 22.888985108906418 27 15.811291628230952 22.010203505337074 40.181479320017324 21.997025546414655 28 12.14292437734144 20.43186053954329 45.205293774355695 22.219921308759577 29 16.605734294696813 18.316986389051 40.91492686232798 24.162352453924207 30 16.05979028219658 20.08095031909486 41.76923511361283 22.090024285095726 31 16.502193188877804 20.98081665694008 41.09678269545737 21.42020745872475 32 18.621585496714925 20.95897889644007 36.67237711553305 23.74705849131196 33 15.17762006061861 19.657373068017094 41.07833355296599 24.086673318398315 34 15.444567857075622 18.811348105197766 42.48762213144073 23.256461906285885 35 15.0789736252565 19.383648035542837 36.48336753327435 29.054010805926318 36 17.11628607466255 19.307215873792806 40.74173083077618 22.834767220768462 37 18.06547563018882 21.171332291647058 40.488714019465725 20.274478058698396 38 17.58617443852482 22.868276887742617 38.24168376663717 21.30386490709539 39 20.02183776050001 19.636664846853293 40.92471620324178 19.416781189404922 40 19.132890302904798 18.875355334249516 39.906248235094786 22.085506127750897 41 15.701726312618838 20.94467139818144 37.22999303450742 26.123609254692294 42 18.29514862855099 18.590334908413187 37.75485231273179 25.359664150304035 43 20.117472090965567 18.88552118827538 37.588810030309304 23.408196690449746 44 18.39868973437 19.85843106986201 37.48112728025754 24.26175191551046 45 19.145691748715148 18.942751181309887 35.49426758786875 26.417289482106217 46 20.53088348801747 19.94804119053446 37.985654850430166 21.5354204710179 47 15.400139309851465 19.096368531034095 42.5561475178373 22.94734464127713 48 16.85686854044692 18.995839530111635 37.75635836518006 26.390933564261378 49 17.86291157589563 16.898284982774527 42.40968391724242 22.829119524087428 50 18.243942845309586 17.522543722585137 39.0718951787496 25.161618253355673 51 16.528925619834713 17.49204616050754 34.88544588565296 31.093582334004783 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 317.0 1 510.0 2 703.0 3 7385.5 4 14068.0 5 9347.0 6 4626.0 7 4586.5 8 4547.0 9 4534.5 10 4522.0 11 4399.5 12 4277.0 13 4036.0 14 3795.0 15 3553.5 16 3312.0 17 3144.5 18 2977.0 19 2791.0 20 2605.0 21 2350.5 22 2096.0 23 2124.0 24 2152.0 25 2201.5 26 2316.0 27 2381.0 28 2640.5 29 2900.0 30 2973.0 31 3046.0 32 3898.5 33 4751.0 34 4551.0 35 4351.0 36 4711.5 37 5072.0 38 5325.5 39 5579.0 40 6674.0 41 7769.0 42 9534.5 43 11300.0 44 13503.0 45 15706.0 46 24329.5 47 32953.0 48 32279.0 49 31605.0 50 30409.0 51 29213.0 52 23280.5 53 17348.0 54 14404.0 55 11460.0 56 9652.5 57 7845.0 58 6778.5 59 5712.0 60 5053.0 61 4394.0 62 3840.0 63 3286.0 64 2897.5 65 2509.0 66 2039.5 67 1570.0 68 1295.0 69 1020.0 70 851.5 71 683.0 72 576.5 73 470.0 74 345.0 75 160.5 76 101.0 77 86.0 78 71.0 79 44.5 80 18.0 81 13.5 82 9.0 83 6.5 84 4.0 85 2.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 265595.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.35158890730885 #Duplication Level Percentage of deduplicated Percentage of total 1 74.39388813008966 30.76305479171791 2 11.613993699312042 9.605141860520535 3 4.156606875062976 5.156468962406936 4 2.0592036268432974 3.4060536741465386 5 1.2798376248139993 2.646165966470754 6 0.9334061910784678 2.315869745820826 7 0.7156490100242634 2.0715256565112123 8 0.6430779856723057 2.1273837199089143 9 0.5367243786982347 1.997496527801414 >10 3.5423769356462067 23.662086848332006 >50 0.06758743577445084 1.8614508757974886 >100 0.0427391137985498 3.108857236593553 >500 0.007951463032288336 2.3349309837503935 >1k 0.005963597274216251 5.440911171076872 >5k 9.93932879036042E-4 3.502601979144667 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8522 3.2086447410531074 No Hit GCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC 2926 1.101677365914268 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCG 2666 1.0037839567762947 No Hit GAATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC 2523 0.9499425817504095 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGC 1957 0.7368361603192831 No Hit CTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGCT 1598 0.6016679530864663 No Hit CCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC 1568 0.5903725597243924 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCC 996 0.3750070596208513 No Hit TCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC 933 0.3512867335604962 No Hit GAACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCT 694 0.2613000997759747 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTA 693 0.2609235866639056 No Hit ACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC 660 0.24849865396562434 No Hit GAATGACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCT 651 0.2451100359570022 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTC 552 0.20783523786215855 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCTGTTCTT 502 0.18900958225870215 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGC 350 0.13177958922419472 No Hit CGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG 342 0.1287674843276417 No Hit AGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG 297 0.11182439428453095 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCG 293 0.11031834183625444 No Hit TTTGAGGGGAACTGGTATCTCCCAAGATTAACCTTCACTTTTTAAAATGAC 291 0.10956531561211619 No Hit GTTTTCGGGTTCTAGTTTCTGGAAGGCATATACTTTATTTTTATAAGGAGT 289 0.10881228938797793 No Hit ACCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG 277 0.1042941320431484 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6276473578192361 0.0 2 0.0 0.0 0.0 3.048626668423728 0.0 3 0.0 0.0 0.0 3.855494267587869 0.0 4 0.0 0.0 0.0 5.137521414183249 0.0 5 0.0 0.0 0.0 8.310773922701857 0.0 6 0.0 0.0 0.0 9.5920480430731 0.0 7 0.0 0.0 0.0 11.17603870554792 0.0 8 0.0 0.0 0.0 13.47691033340236 0.0 9 0.0 0.0 0.0 14.368116869669986 0.0 10 0.0 0.0 0.0 17.12494587624014 0.0 11 0.0 0.0 0.0 19.66753892204296 0.0 12 0.0 0.0 0.0 22.469926015173478 0.0 13 0.0 0.0 0.0 23.376946102148008 0.0 14 0.0 0.0 0.0 23.699241326079182 0.0 15 0.0 0.0 0.0 24.534347408648507 0.0 16 0.0 0.0 0.0 25.669534441536925 0.0 17 0.0 0.0 0.0 27.11910992300307 0.0 18 0.0 0.0 0.0 29.093921195805645 0.0 19 0.0 0.0 0.0 30.086786272331935 0.0 20 0.0 0.0 0.0 30.880475912573655 0.0 21 0.0 0.0 0.0 31.764528699711967 0.0 22 0.0 0.0 0.0 32.597375703608876 0.0 23 0.0 0.0 0.0 33.423821984600615 0.0 24 0.0 0.0 0.0 34.074060129143994 0.0 25 0.0 0.0 0.0 34.61623901052354 0.0 26 0.0 0.0 0.0 35.127920329825486 0.0 27 0.0 0.0 0.0 35.62152901974811 0.0 28 3.7651311206912783E-4 0.0 0.0 36.103089290084526 0.0 29 3.7651311206912783E-4 0.0 0.0 36.61740620117096 0.0 30 3.7651311206912783E-4 0.0 0.0 37.18970613151603 0.0 31 3.7651311206912783E-4 0.0 0.0 37.72171915886971 0.0 32 3.7651311206912783E-4 0.0 0.0 38.19349008829232 0.0 33 3.7651311206912783E-4 0.0 0.0 38.638528586758035 0.0 34 3.7651311206912783E-4 0.0 0.0 39.112935107965136 0.0 35 3.7651311206912783E-4 0.0 0.0 39.59600143074982 0.0 36 3.7651311206912783E-4 0.0 0.0 40.0256028916207 0.0 37 3.7651311206912783E-4 0.0 0.0 40.436755210000186 0.0 38 3.7651311206912783E-4 0.0 0.0 40.83134095144863 0.0 39 3.7651311206912783E-4 0.0 0.0 41.30047628908677 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACGG 25 3.8826787E-5 45.0 2 CATATTA 20 7.023482E-4 45.0 28 CTCGTCT 20 7.023482E-4 45.0 13 ATCTAGG 20 7.023482E-4 45.0 2 CGTGCGG 20 7.023482E-4 45.0 2 ACTTAGT 35 1.2072087E-7 45.0 18 ACGGGTG 40 6.7811925E-9 45.0 5 GCGCAAG 35 1.2072087E-7 45.0 1 ACGGGCA 50 2.1827873E-11 45.0 5 GCCGCGG 25 3.8826787E-5 45.0 2 TACATGG 25 3.8826787E-5 45.0 2 AACGGGC 35 1.2072087E-7 45.0 4 CCACTAT 25 3.8826787E-5 45.0 33 CACTCAT 20 7.023482E-4 45.0 11 TGCGCGG 25 3.8826787E-5 45.0 2 TGACCGG 25 3.8826787E-5 45.0 2 TATCTCC 20 7.023482E-4 45.0 16 GAGCGAC 20 7.023482E-4 45.0 18 TTGACGG 20 7.023482E-4 45.0 2 CGGGATC 70 0.0 45.0 6 >>END_MODULE