SRR3552223_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552223_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	509527
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9285	1.8222783090984382	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCG	3211	0.6301923156182107	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTC	2845	0.558360989702214	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGC	2693	0.52852940079721	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCC	1913	0.3754462472057418	No Hit
GCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGC	1305	0.25611989158572557	No Hit
CCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGC	883	0.17329798028367485	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTA	785	0.15406445585808015	No Hit
CTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGCT	766	0.15033550724495465	No Hit
GAACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCT	755	0.1481766422584083	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAGTGCTT	641	0.12580295057965526	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCT	635	0.12462538785972088	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGC	597	0.11716749063346986	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTC	581	0.11402732338031153	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCG	565	0.11088715612715323	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCGG	70	0.0	45.000004	2
TACGTAG	35	1.2101555E-7	45.000004	1
GTACGAG	45	3.8380676E-10	45.000004	1
GTCGACG	20	7.029586E-4	45.0	1
CTAAGCG	20	7.029586E-4	45.0	1
CCCCGGA	20	7.029586E-4	45.0	32
GTATGCG	25	3.8877384E-5	45.0	1
ATCCCCG	25	3.8877384E-5	45.0	38
CCTATAT	20	7.029586E-4	45.0	37
ACGAAGC	20	7.029586E-4	45.0	44
CGTTTTT	4640	0.0	43.06035	1
ACGTAGG	65	0.0	41.538464	2
CGAAAGG	135	0.0	40.000004	2
TACGGGT	85	0.0	39.705883	4
CGCACGG	40	3.4531695E-7	39.375	2
TACGGCT	335	0.0	38.955223	7
ACGGGCC	35	6.241442E-6	38.57143	5
AACGGGC	70	0.0	38.57143	4
TGCGACG	35	6.241442E-6	38.57143	1
GCGATAC	35	6.241442E-6	38.57143	9