##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552223_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 509527 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.97170513044451 28.0 16.0 31.0 16.0 33.0 2 26.146002076435597 30.0 22.0 31.0 16.0 34.0 3 26.64301204842923 30.0 23.0 33.0 16.0 34.0 4 30.098365739205185 33.0 28.0 35.0 19.0 37.0 5 31.976405568301583 33.0 32.0 35.0 26.0 37.0 6 30.083634429578805 35.0 28.0 35.0 17.0 37.0 7 32.91609473099561 35.0 32.0 35.0 28.0 37.0 8 33.6584459704785 35.0 33.0 37.0 30.0 37.0 9 35.27505510012227 37.0 34.0 39.0 30.0 39.0 10 35.00268680560598 37.0 34.0 39.0 30.0 39.0 11 35.11934794426988 37.0 34.0 39.0 30.0 39.0 12 35.00457090595788 37.0 34.0 39.0 27.0 39.0 13 35.384866748965216 37.0 34.0 39.0 30.0 39.0 14 35.47050107256338 38.0 34.0 40.0 27.0 41.0 15 36.10300141111266 38.0 34.0 40.0 30.0 41.0 16 35.80059349161085 38.0 34.0 40.0 27.0 41.0 17 35.65741364049403 37.0 34.0 40.0 29.0 41.0 18 35.53349479026627 38.0 34.0 39.0 27.0 40.0 19 35.018393529685376 37.0 33.0 40.0 27.0 41.0 20 35.848096371733 37.0 34.0 39.0 30.0 40.0 21 36.11619992659859 38.0 35.0 39.0 31.0 40.0 22 36.81929318760341 38.0 35.0 40.0 32.0 41.0 23 37.28644998204217 39.0 35.0 40.0 33.0 41.0 24 37.22879062346058 39.0 35.0 40.0 33.0 41.0 25 35.26544618832761 37.0 34.0 40.0 27.0 41.0 26 36.03554473070122 38.0 34.0 40.0 30.0 41.0 27 36.627691957442885 38.0 35.0 40.0 32.0 41.0 28 36.75592461243467 39.0 35.0 40.0 32.0 41.0 29 36.951327407576045 39.0 35.0 40.0 32.0 41.0 30 35.82884714647114 38.0 35.0 40.0 29.0 41.0 31 35.893514965840865 38.0 35.0 40.0 30.0 41.0 32 35.91340400018056 38.0 35.0 40.0 30.0 41.0 33 36.133021410052855 39.0 35.0 40.0 30.0 41.0 34 36.159681430032165 39.0 35.0 40.0 30.0 41.0 35 36.1058746641493 39.0 35.0 40.0 30.0 41.0 36 35.89369945066699 39.0 35.0 40.0 29.0 41.0 37 36.02100771892363 39.0 35.0 40.0 30.0 41.0 38 35.615559136218494 39.0 35.0 40.0 28.0 41.0 39 35.572309220119834 39.0 35.0 40.0 27.0 41.0 40 35.307620597142055 38.0 35.0 40.0 26.0 41.0 41 35.12466071474132 38.0 35.0 40.0 25.0 41.0 42 35.479295503476756 39.0 35.0 40.0 27.0 41.0 43 35.413611054958814 38.0 35.0 40.0 26.0 41.0 44 35.50058976266224 39.0 35.0 40.0 27.0 41.0 45 35.50846765725859 39.0 35.0 40.0 27.0 41.0 46 35.34618970142897 38.0 35.0 40.0 26.0 41.0 47 35.34759492627476 38.0 35.0 40.0 26.0 41.0 48 35.28986883913905 38.0 35.0 40.0 26.0 41.0 49 35.33732854196147 38.0 35.0 40.0 27.0 41.0 50 35.294129653580676 38.0 35.0 40.0 26.0 41.0 51 34.13888174718906 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 21.0 9 27.0 10 33.0 11 31.0 12 26.0 13 38.0 14 42.0 15 68.0 16 95.0 17 183.0 18 327.0 19 638.0 20 951.0 21 1488.0 22 2079.0 23 3073.0 24 4581.0 25 6771.0 26 8808.0 27 9547.0 28 9779.0 29 10497.0 30 12697.0 31 17456.0 32 24849.0 33 33289.0 34 43083.0 35 66517.0 36 91946.0 37 100197.0 38 54692.0 39 5698.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.999163930468846 19.329103266362722 23.69727217595927 18.974460627209154 2 37.635885831369094 21.53369693853319 23.423881364481176 17.406535865616544 3 30.1273534081609 19.769904244524824 32.5364504726933 17.56629187462097 4 26.220396563871983 23.113397327325146 32.83300001766344 17.833206091139427 5 24.853049985574856 26.502619095749587 30.21213792399618 18.43219299467938 6 22.970127196399797 30.317529787430303 30.553434852323825 16.15890816384608 7 72.13866978589947 5.466246145935348 18.205708431545332 4.189375636619846 8 73.80374347188668 5.747879896452985 15.599762132330575 4.84861449932977 9 68.18912442323959 6.424193418601959 17.36630247268545 8.020379685472998 10 34.43487783768083 24.16927856619963 26.39173193962243 15.004111656497104 11 26.73381390976337 24.569257370070673 31.84423985382521 16.852688866340742 12 23.705122594092167 22.253776541773057 35.21638696281061 18.82471390132417 13 22.102655992714812 22.46946677997437 37.27201895090938 18.155858276401446 14 18.944629038304154 25.2583278216856 35.36593742824227 20.431105711767973 15 18.187063688479707 24.19852137374467 38.488833761508225 19.1255811762674 16 20.202658544100704 23.908252163280846 35.99279331615401 19.896295976464444 17 20.524525687549435 23.457638162452625 34.87528629493629 21.142549855061652 18 21.331941192517768 23.269031866809804 35.82773827490986 19.57128866576256 19 20.959438852111862 24.91310568429151 34.432130191334316 19.695325272262316 20 22.13621653023294 25.29914999597666 35.04740671250002 17.517226761290374 21 21.821414763103817 25.71208198976698 34.39856965381619 18.06793359331301 22 20.58163747946625 23.386199357443278 34.478840179225045 21.553322983865428 23 19.48199015950087 25.78509087840291 34.77695980782177 19.955959154274456 24 19.882361484278558 24.463669246183226 34.912183260160894 20.741786009377325 25 19.583849334775195 25.719736147446554 33.408435666804706 21.28797885097355 26 18.924414211611946 26.152490447022437 34.22193524582603 20.70116009553959 27 20.64071187591629 25.65202629105033 33.83039564144785 19.876866191585528 28 17.54705835019538 26.80270132887953 35.23130275726311 20.418937563661984 29 20.391853621103493 25.344486160694135 34.02488975069035 20.238770467512026 30 21.074251217305463 25.13075852702605 34.27845825638288 19.51653199928561 31 21.761359064387168 26.56601122217272 31.46781230435286 20.20481740908725 32 22.16310421233811 27.026830766573706 31.47644776429905 19.33361725678914 33 21.48306174157601 25.692848465341385 31.822847464413073 21.00124232866953 34 21.49797753602851 26.682786191899545 31.78810936417501 20.031126907896933 35 21.218895171404068 25.641624487024238 31.242309043485427 21.897171298086267 36 21.267175242921375 28.46031711764048 31.171655280289368 19.100852359148778 37 22.85472604984623 27.28667960677256 30.561285270456718 19.297309072924495 38 20.779664276868548 27.375978113034243 31.067440979575174 20.77691663052203 39 23.178752058281503 24.765910344299712 31.502942925497567 20.552394671921213 40 22.457102371415058 24.20048397827789 32.930148942058025 20.412264708249023 41 20.499993130884135 26.510273253429162 31.542391276615373 21.447342339071334 42 21.27325931697437 26.09223848785246 31.258402400657864 21.376099794515305 43 21.643995313300373 25.298953735523337 31.88388446539634 21.173166485779948 44 21.929358012431138 26.078107735213248 30.557752582296914 21.4347816700587 45 21.53134181309332 24.745302996700865 30.52360326341882 23.199751926787002 46 22.02572189501243 26.20548076941948 30.857834815426855 20.91096252014123 47 20.17596712244886 25.806090746908406 33.20569861852267 20.812243512120066 48 20.395386309263298 25.502279565165342 32.08819159730495 22.01414252826641 49 21.055802734693156 24.607135637561896 33.109530996394696 21.227530631350252 50 20.515693967149925 24.251904217048363 32.25462046172235 22.977781354079372 51 20.22444345441949 23.996373106822602 30.96440424158092 24.81477919717699 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 282.0 1 813.5 2 1345.0 3 8187.5 4 15030.0 5 9877.0 6 4724.0 7 4654.5 8 4585.0 9 4401.0 10 4217.0 11 4034.5 12 3852.0 13 3728.5 14 3605.0 15 3439.0 16 3273.0 17 3048.0 18 2823.0 19 2844.0 20 2865.0 21 2954.5 22 3044.0 23 3214.0 24 3384.0 25 3835.5 26 5068.5 27 5850.0 28 6500.0 29 7150.0 30 8116.0 31 9082.0 32 10271.5 33 11461.0 34 13117.5 35 14774.0 36 15886.5 37 16999.0 38 17754.0 39 18509.0 40 20583.0 41 22657.0 42 24762.5 43 26868.0 44 27869.0 45 28870.0 46 38179.5 47 47489.0 48 45691.0 49 43893.0 50 42789.5 51 41686.0 52 37572.0 53 33458.0 54 30498.0 55 27538.0 56 25089.0 57 22640.0 58 21021.0 59 19402.0 60 17923.5 61 16445.0 62 14955.0 63 13465.0 64 11498.0 65 9531.0 66 7662.5 67 5794.0 68 4680.5 69 3567.0 70 3047.0 71 2527.0 72 1892.5 73 1258.0 74 1005.0 75 532.0 76 312.0 77 226.0 78 140.0 79 94.0 80 48.0 81 36.5 82 25.0 83 18.0 84 11.0 85 7.5 86 4.0 87 3.5 88 3.0 89 2.0 90 1.0 91 1.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 509527.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.75266373512525 #Duplication Level Percentage of deduplicated Percentage of total 1 74.24371067199309 29.513852647916718 2 8.689031397630657 6.908242866679139 3 3.580831450122815 4.270427655866796 4 2.136356204086318 3.397033991979681 5 1.6364896809959624 3.252741199731745 6 1.3743792692506323 3.278114216102854 7 1.1466569474577768 3.1907867636283935 8 1.0291236642540802 3.2728325573561916 9 0.9056088389022156 3.2400327283593295 >10 5.183456488113311 31.38304961673679 >50 0.041699304979959564 1.1250108484829597 >100 0.025120063240920008 1.6836217739580364 >500 0.0045216113833656014 1.2398486325897378 >1k 0.0025120063240920013 2.390023934632956 >5k 5.024012648184001E-4 1.8543805659786912 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9285 1.8222783090984382 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCG 3211 0.6301923156182107 No Hit GAATCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTC 2845 0.558360989702214 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGC 2693 0.52852940079721 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCC 1913 0.3754462472057418 No Hit GCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGC 1305 0.25611989158572557 No Hit CCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGC 883 0.17329798028367485 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTA 785 0.15406445585808015 No Hit CTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGCT 766 0.15033550724495465 No Hit GAACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCT 755 0.1481766422584083 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAGTGCTT 641 0.12580295057965526 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCT 635 0.12462538785972088 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGC 597 0.11716749063346986 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTC 581 0.11402732338031153 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCG 565 0.11088715612715323 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.15798966492452804 0.0 2 0.0 0.0 0.0 0.752070057131418 0.0 3 0.0 0.0 0.0 1.0134889809568481 0.0 4 1.9626045332239508E-4 0.0 0.0 1.4642992422383898 0.0 5 1.9626045332239508E-4 0.0 0.0 2.7323380311543843 0.0 6 1.9626045332239508E-4 0.0 0.0 3.2793159145638993 0.0 7 1.9626045332239508E-4 0.0 0.0 3.944246330420174 0.0 8 1.9626045332239508E-4 0.0 0.0 4.8490070202364155 0.0 9 1.9626045332239508E-4 0.0 0.0 5.225630830162092 0.0 10 3.9252090664479016E-4 0.0 0.0 6.6834534774408425 0.0 11 3.9252090664479016E-4 0.0 0.0 8.031370270859052 0.0 12 3.9252090664479016E-4 0.0 0.0 9.46446410101918 0.0 13 3.9252090664479016E-4 0.0 0.0 9.87661105299621 0.0 14 3.9252090664479016E-4 0.0 0.0 10.04696512648005 0.0 15 3.9252090664479016E-4 0.0 0.0 10.475990477442805 0.0 16 3.9252090664479016E-4 0.0 0.0 11.017865589065938 0.0 17 3.9252090664479016E-4 0.0 0.0 11.656497104177012 0.0 18 3.9252090664479016E-4 0.0 0.0 12.345371295338618 0.0 19 3.9252090664479016E-4 0.0 0.0 12.864087673469708 0.0 20 3.9252090664479016E-4 0.0 0.0 13.268580467767164 0.0 21 3.9252090664479016E-4 0.0 0.0 13.73528782576782 0.0 22 3.9252090664479016E-4 0.0 0.0 14.260088277951905 0.0 23 3.9252090664479016E-4 0.0 0.0 14.747795504458056 0.0 24 3.9252090664479016E-4 0.0 0.0 15.133054774329917 0.0 25 3.9252090664479016E-4 0.0 0.0 15.481417078977168 0.0 26 3.9252090664479016E-4 0.0 0.0 15.802302920159285 0.0 27 3.9252090664479016E-4 0.0 0.0 16.13947837896716 0.0 28 3.9252090664479016E-4 0.0 0.0 16.47626131686839 0.0 29 3.9252090664479016E-4 0.0 0.0 16.81873580791597 0.0 30 3.9252090664479016E-4 0.0 0.0 17.2291164158131 0.0 31 3.9252090664479016E-4 0.0 0.0 17.620067238831307 0.0 32 3.9252090664479016E-4 0.0 0.0 17.972158492091683 0.0 33 3.9252090664479016E-4 0.0 0.0 18.333473986658216 0.0 34 3.9252090664479016E-4 0.0 0.0 18.693219397598163 0.0 35 3.9252090664479016E-4 0.0 0.0 19.06729182163065 0.0 36 3.9252090664479016E-4 0.0 0.0 19.431354962543693 0.0 37 3.9252090664479016E-4 0.0 0.0 19.79914705206986 0.0 38 3.9252090664479016E-4 0.0 0.0 20.19480812596781 0.0 39 3.9252090664479016E-4 0.0 0.0 20.610487766104644 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATGCGG 70 0.0 45.000004 2 TACGTAG 35 1.2101555E-7 45.000004 1 GTACGAG 45 3.8380676E-10 45.000004 1 GTCGACG 20 7.029586E-4 45.0 1 CTAAGCG 20 7.029586E-4 45.0 1 CCCCGGA 20 7.029586E-4 45.0 32 GTATGCG 25 3.8877384E-5 45.0 1 ATCCCCG 25 3.8877384E-5 45.0 38 CCTATAT 20 7.029586E-4 45.0 37 ACGAAGC 20 7.029586E-4 45.0 44 CGTTTTT 4640 0.0 43.06035 1 ACGTAGG 65 0.0 41.538464 2 CGAAAGG 135 0.0 40.000004 2 TACGGGT 85 0.0 39.705883 4 CGCACGG 40 3.4531695E-7 39.375 2 TACGGCT 335 0.0 38.955223 7 ACGGGCC 35 6.241442E-6 38.57143 5 AACGGGC 70 0.0 38.57143 4 TGCGACG 35 6.241442E-6 38.57143 1 GCGATAC 35 6.241442E-6 38.57143 9 >>END_MODULE