##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552222_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 553374 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.85177655618081 30.0 25.0 33.0 16.0 33.0 2 28.476030677263477 31.0 27.0 33.0 16.0 34.0 3 28.369021674310684 31.0 26.0 33.0 16.0 34.0 4 32.695451900522976 35.0 32.0 35.0 28.0 37.0 5 33.77106802993997 35.0 33.0 35.0 30.0 37.0 6 33.36437924441697 35.0 33.0 36.0 28.0 37.0 7 34.48225973753736 35.0 35.0 37.0 32.0 37.0 8 34.64677053855078 35.0 35.0 37.0 32.0 37.0 9 36.566792079136356 39.0 35.0 39.0 32.0 39.0 10 36.08153436916082 37.0 35.0 39.0 31.0 39.0 11 36.21350659770788 37.0 35.0 39.0 32.0 39.0 12 36.123343344645754 37.0 35.0 39.0 32.0 39.0 13 36.435631236740434 37.0 35.0 39.0 32.0 39.0 14 37.44218738140932 39.0 36.0 40.0 33.0 41.0 15 37.67100731151084 39.0 37.0 40.0 33.0 41.0 16 37.39359095295406 39.0 36.0 40.0 32.0 41.0 17 36.45551290808748 38.0 34.0 40.0 30.0 41.0 18 36.282572003744306 38.0 34.0 40.0 30.0 41.0 19 35.86696881313542 37.0 34.0 40.0 29.0 41.0 20 36.428440801338695 38.0 35.0 40.0 31.0 41.0 21 36.824968285463356 38.0 35.0 40.0 32.0 41.0 22 37.26002486564241 39.0 35.0 40.0 33.0 41.0 23 37.51436822113074 39.0 35.0 40.0 33.0 41.0 24 37.47025339101584 39.0 35.0 40.0 33.0 41.0 25 36.688136775489994 38.0 35.0 40.0 31.0 41.0 26 36.940224875039306 39.0 35.0 40.0 32.0 41.0 27 37.28590971025021 39.0 35.0 40.0 33.0 41.0 28 37.275124960695656 39.0 35.0 40.0 33.0 41.0 29 37.34436204086206 39.0 35.0 41.0 33.0 41.0 30 36.97949126630453 39.0 35.0 41.0 32.0 41.0 31 36.90809109210046 39.0 35.0 40.0 32.0 41.0 32 36.7867409744585 39.0 35.0 40.0 32.0 41.0 33 36.56956777875361 39.0 35.0 41.0 31.0 41.0 34 36.394281263666166 39.0 35.0 41.0 30.0 41.0 35 36.28613921145554 39.0 35.0 41.0 30.0 41.0 36 36.05231362514321 39.0 35.0 41.0 29.0 41.0 37 36.04427024037992 39.0 35.0 41.0 29.0 41.0 38 35.83130396440743 39.0 35.0 41.0 27.0 41.0 39 35.72859042889619 39.0 35.0 40.0 27.0 41.0 40 35.579044190728155 39.0 35.0 40.0 25.0 41.0 41 35.47032025357173 39.0 35.0 40.0 25.0 41.0 42 35.512897244901275 39.0 35.0 40.0 25.0 41.0 43 35.443949300111676 39.0 35.0 40.0 24.0 41.0 44 35.33409050660132 39.0 35.0 40.0 24.0 41.0 45 35.2983768662785 39.0 35.0 40.0 24.0 41.0 46 35.14886677003256 38.0 35.0 40.0 23.0 41.0 47 35.16116225193088 38.0 35.0 40.0 23.0 41.0 48 35.08902658961209 38.0 35.0 40.0 23.0 41.0 49 35.0388977436598 38.0 35.0 40.0 24.0 41.0 50 34.93371390777304 38.0 35.0 40.0 24.0 41.0 51 33.11004853860138 36.0 32.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 16.0 9 36.0 10 28.0 11 26.0 12 30.0 13 21.0 14 27.0 15 62.0 16 114.0 17 197.0 18 334.0 19 612.0 20 961.0 21 1313.0 22 1957.0 23 2854.0 24 4424.0 25 6685.0 26 9131.0 27 10313.0 28 10492.0 29 10048.0 30 10861.0 31 13593.0 32 18317.0 33 27024.0 34 37605.0 35 48205.0 36 67513.0 37 108130.0 38 124420.0 39 38025.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.280981759171915 19.306653366439335 23.629046539953087 18.783318334435663 2 36.84560532298229 24.426156631861996 23.121433244062786 15.606804801092933 3 29.389707503424447 22.66297296222808 32.46086733384655 15.486452200500928 4 26.068445572072413 22.76453176332824 33.863535330535946 17.3034873340634 5 25.047797691976854 26.427154148911946 30.032853007188624 18.49219515192257 6 22.505574891483878 32.50586402686068 30.860322313661285 14.128238767994159 7 71.78291715910035 5.581035610635845 18.389009964327922 4.247037265935877 8 73.11510840769535 6.526327583153527 16.031833804985418 4.326730204165718 9 67.70050634832862 6.727095960417367 17.5698532999382 8.00254439131582 10 34.2927206554699 24.1478638316943 26.482631999334988 15.076783513500816 11 26.471066584263088 24.595300827288597 31.98072189875202 16.9529106896963 12 23.72319624702281 22.203789841951373 35.424866365243034 18.64814754578278 13 21.74966659076863 22.595748987122633 37.753671115737276 17.90091330637146 14 18.836808379143218 25.736662727197157 35.11964783311106 20.306881060548562 15 18.119210515853652 24.139370480000867 39.04357631547561 18.69784268866987 16 20.12779783654454 24.182198657689014 35.72177225529208 19.968231250474364 17 20.468435452334226 23.281903378185458 35.113142287133115 21.136518882347204 18 21.110677408045913 23.535077542493866 35.82387318522374 19.530371864236486 19 20.78937572057957 24.969550430631003 34.3288625775696 19.912211271219824 20 21.803698764307683 25.391868790366008 35.17006581444014 17.634366630886163 21 21.61558005977874 26.074408989218867 34.45337149920307 17.856639451799325 22 20.658722672189153 23.26744660934558 34.278625305851016 21.795205412614255 23 19.501458326556723 26.13928373938783 34.73455565313874 19.624702280916704 24 20.137014026679967 24.099252946470198 34.685764058304144 21.077968968545687 25 19.39664675246759 26.750805061314768 33.111060512420174 20.74148767379747 26 18.992760773003432 25.763046330329942 34.254771637265215 20.989421259401418 27 20.583366764611274 25.74732459421657 33.54404073917459 20.125267901997564 28 17.684784612215246 26.346015533798116 35.45883977201675 20.510360081969882 29 20.568006447718904 25.63817598947547 33.54982344671054 20.24399411609508 30 21.293013405038906 25.15206713723449 34.218087586334015 19.336831871392583 31 21.764484778829505 26.70363985297466 31.3422748448608 20.189600523335034 32 22.57424454347331 26.71484384882557 31.46660305688377 19.244308550817347 33 21.172299385225905 25.468670374827873 32.07071528478028 21.288314955165948 34 21.91664227086925 26.612923628504408 31.72321070379165 19.74722339683469 35 21.413366005630913 25.341812228257922 31.00272148673411 22.24210027937706 36 21.042730594498476 28.633979912319695 31.35655090409018 18.966738589091644 37 22.92771254160839 26.958259694167054 30.69406947200266 19.4199582922219 38 20.50909511469639 27.35545941804277 31.00127580985012 21.13416965741072 39 23.714160766497884 24.528076852183155 31.374802574750532 20.382959806568433 40 22.24155815054556 24.1108183615421 33.10328999916873 20.5443334887436 41 20.50566163209692 26.580938027446177 31.49190240235356 21.421497938103347 42 21.207537759273112 25.822680501794448 31.6924900700069 21.27729166892554 43 21.987299728574165 25.14158597982558 31.566535471489445 21.304578820110812 44 21.791049091572788 26.06157860687347 30.655939744187478 21.491432557366267 45 21.54040486181136 24.529703238677637 30.64184439456859 23.28804750494241 46 22.33155153657382 26.19693010513685 30.644555038726068 20.82696331956326 47 20.227730251150216 25.422408714540257 33.70830577511773 20.641555259191794 48 20.598907791114147 25.346329968520386 31.954338295619237 22.100423944746233 49 20.929425668715915 24.408447090033143 33.3982080835023 21.26391915774865 50 20.62764061918341 24.087145402566797 32.424906121357346 22.860307856892444 51 20.3504320766787 23.727352568064276 30.894115010824507 25.02810034443252 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 360.0 1 870.0 2 1380.0 3 9110.5 4 16841.0 5 11064.0 6 5287.0 7 5067.5 8 4848.0 9 4768.0 10 4688.0 11 4546.0 12 4404.0 13 4194.5 14 3985.0 15 3895.5 16 3806.0 17 3564.5 18 3323.0 19 3325.0 20 3327.0 21 3360.0 22 3393.0 23 3583.5 24 3774.0 25 4315.5 26 5614.0 27 6371.0 28 7073.0 29 7775.0 30 8699.0 31 9623.0 32 11053.5 33 12484.0 34 14133.0 35 15782.0 36 17095.5 37 18409.0 38 19052.0 39 19695.0 40 22071.0 41 24447.0 42 26848.5 43 29250.0 44 30427.5 45 31605.0 46 43944.5 47 56284.0 48 51339.5 49 46395.0 50 45207.0 51 44019.0 52 39816.5 53 35614.0 54 32496.0 55 29378.0 56 26653.0 57 23928.0 58 22371.5 59 20815.0 60 19277.5 61 17740.0 62 16209.0 63 14678.0 64 12252.0 65 9826.0 66 7895.5 67 5965.0 68 4887.0 69 3809.0 70 3215.0 71 2621.0 72 1957.5 73 1294.0 74 1001.0 75 495.5 76 283.0 77 203.5 78 124.0 79 92.5 80 61.0 81 53.0 82 45.0 83 38.0 84 31.0 85 23.0 86 15.0 87 12.5 88 10.0 89 10.0 90 10.0 91 6.5 92 3.0 93 3.0 94 3.0 95 2.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 553374.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.6693573976965 #Duplication Level Percentage of deduplicated Percentage of total 1 74.39065422945698 27.27857486988421 2 8.29262848704724 6.08170715515709 3 3.2224454444770525 3.5449501109432395 4 2.035077822090256 2.9849998396141366 5 1.5285896169666855 2.8026199489479695 6 1.2348947647897577 2.716967848717199 7 1.055798338177712 2.7100812621772787 8 0.9998735465290967 2.9331776344142213 9 0.8707195923059513 2.873585513109916 >10 6.285467694734765 37.025722662970225 >50 0.04991099013368336 1.2143403110610285 >100 0.02695193467213396 1.7774940619451018 >500 0.0034937693093506986 0.9776949422272172 >1k 0.0029946594080148847 3.1113466899780406 >5k 0.0 0.0 >10k+ 4.991099013358141E-4 1.966737148853178 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10746 1.9419054744169404 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCG 4709 0.8509615558374626 No Hit GAATCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTC 4293 0.7757863578700843 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGC 3679 0.6648306570240019 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCC 1768 0.31949459136135777 No Hit GCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGC 1549 0.27991918666218507 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCT 1002 0.18107102971950254 No Hit GAACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCT 929 0.16787922815311165 No Hit CCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGC 855 0.15450671697622223 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTA 831 0.1501696863242581 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTC 808 0.14601336528279246 No Hit CTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGCT 768 0.13878498086285224 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGC 593 0.10716079902561378 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCG 558 0.10083596265816608 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.15215749203974166 0.0 2 0.0 0.0 0.0 0.7530169469472725 0.0 3 0.0 0.0 0.0 1.0199250416535652 0.0 4 0.0 0.0 0.0 1.4646513930903873 0.0 5 0.0 0.0 0.0 3.003032307264165 0.0 6 0.0 0.0 0.0 3.564316357472523 0.0 7 0.0 0.0 0.0 4.283179188035578 0.0 8 0.0 0.0 0.0 5.186727240528106 0.0 9 0.0 0.0 0.0 5.537123175284708 0.0 10 0.0 0.0 0.0 7.180857792379114 0.0 11 0.0 0.0 0.0 8.453234159899091 0.0 12 0.0 0.0 0.0 9.995409975893338 0.0 13 0.0 0.0 0.0 10.390260474832573 0.0 14 0.0 0.0 0.0 10.572235052604567 0.0 15 0.0 0.0 0.0 10.988228575972128 0.0 16 0.0 0.0 0.0 11.552946108779958 0.0 17 0.0 0.0 0.0 12.155431950181974 0.0 18 0.0 0.0 0.0 12.846104081507264 0.0 19 0.0 0.0 0.0 13.283059919692649 0.0 20 0.0 0.0 0.0 13.67230842070643 0.0 21 0.0 0.0 0.0 14.133840765919613 0.0 22 0.0 0.0 0.0 14.624467358423056 0.0 23 0.0 0.0 0.0 15.077144932721811 0.0 24 0.0 0.0 0.0 15.451755955285215 0.0 25 0.0 0.0 0.0 15.791128603801408 0.0 26 1.8070961049850554E-4 0.0 0.0 16.11134603360476 0.0 27 1.8070961049850554E-4 0.0 0.0 16.44764661874248 0.0 28 1.8070961049850554E-4 0.0 0.0 16.76208134100988 0.0 29 1.8070961049850554E-4 0.0 0.0 17.11103159888249 0.0 30 1.8070961049850554E-4 0.0 0.0 17.514375449515157 0.0 31 1.8070961049850554E-4 0.0 0.0 17.870192672586715 0.0 32 1.8070961049850554E-4 0.0 0.0 18.235045376183198 0.0 33 1.8070961049850554E-4 0.0 0.0 18.5852606013293 0.0 34 1.8070961049850554E-4 0.0 0.0 18.930777376602443 0.0 35 1.8070961049850554E-4 0.0 0.0 19.286052470842506 0.0 36 1.8070961049850554E-4 0.0 0.0 19.636448405599108 0.0 37 1.8070961049850554E-4 0.0 0.0 19.986482921134712 0.0 38 1.8070961049850554E-4 0.0 0.0 20.354769107330664 0.0 39 1.8070961049850554E-4 0.0 0.0 20.76425708472028 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTCTA 35 1.2103919E-7 45.000004 31 TCGACGG 35 1.2103919E-7 45.000004 2 TAACGCG 20 7.0301135E-4 45.0 1 GCCGATA 20 7.0301135E-4 45.0 9 GTTCACG 20 7.0301135E-4 45.0 1 TTACGAG 25 3.888175E-5 45.0 1 ATAACGC 20 7.0301135E-4 45.0 11 GTCTTCG 20 7.0301135E-4 45.0 1 TCGAACG 20 7.0301135E-4 45.0 1 GTCGACG 30 2.1634532E-6 44.999996 1 CGTTTTT 5105 0.0 43.457394 1 TACGAAT 75 0.0 42.000004 12 CGAATAT 75 0.0 42.000004 14 GTAACGG 55 6.002665E-11 40.909092 2 TACGCGG 50 1.0786607E-9 40.5 2 TAAACGG 40 3.453897E-7 39.375 2 TGCGTAG 40 3.453897E-7 39.375 1 TAGTGCG 35 6.242417E-6 38.57143 1 TACGGCT 410 0.0 38.414635 7 GGCCGAT 100 0.0 38.25 8 >>END_MODULE