SRR3552220_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552220_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	695994
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13412	1.927028106564137	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCG	8356	1.2005850625149068	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTC	7820	1.123572904364118	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGC	5351	0.7688284669120711	No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGC	3469	0.49842383698710047	Illumina Single End Adapter 1 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCT	1731	0.24870904059517757	No Hit
CCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGC	1552	0.22299042807840297	Illumina Single End Adapter 1 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCT	1451	0.2084788087253626	TruSeq Adapter, Index 27 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGCT	1314	0.18879473098906027	TruSeq Adapter, Index 27 (95% over 24bp)
GAATGATCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTC	1313	0.1886510515895252	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	1228	0.17643830262904567	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1149	0.16508763006577643	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTA	1088	0.15632318669413817	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCC	1074	0.15431167510064742	No Hit
TCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGC	862	0.12385164239921609	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTG	25	3.8892133E-5	45.000004	1
GTCGCAA	20	7.0313667E-4	45.0	32
CGAACGG	40	6.8084773E-9	45.0	2
GTCGACG	20	7.0313667E-4	45.0	1
TGTTACG	20	7.0313667E-4	45.0	1
TATAGCG	20	7.0313667E-4	45.0	1
ATGCGAG	35	1.2110104E-7	45.0	1
CGGTCTA	35	1.2110104E-7	45.0	31
CGTTTTT	5800	0.0	43.293106	1
TACGGGT	100	0.0	42.750004	4
CGTAAGG	70	0.0	41.785713	2
CTCGTGT	195	0.0	41.53846	16
CGCATGG	60	3.6379788E-12	41.250004	2
CTACGAA	60	3.6379788E-12	41.250004	11
CGTGTAC	200	0.0	40.500004	18
CTCGTAC	45	1.9264917E-8	40.0	29
TCGTGTA	205	0.0	39.512196	17
ACAACGG	40	3.455607E-7	39.375	2
CTCACGT	40	3.455607E-7	39.375	45
ACGGGTA	110	0.0	38.863636	5