SRR3552214_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552214_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	579055
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10529	1.8183074146670006	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCG	5665	0.9783181217673624	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTC	5270	0.9101035307526919	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGC	3176	0.5484798507913756	No Hit
GCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC	1960	0.3384825275664661	TruSeq Adapter, Index 19 (95% over 21bp)
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	1430	0.2469540889898196	No Hit
GAACTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCT	1195	0.20637072471526885	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCT	1134	0.19583631952059824	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTC	834	0.14402776938287382	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCC	799	0.13798343853347264	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	751	0.12969407051143675	No Hit
CCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC	725	0.1252039961661673	TruSeq Adapter, Index 19 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGCT	690	0.11915966531676611	TruSeq Adapter, Index 16 (95% over 23bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTA	669	0.11553306680712541	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGG	20	7.0303824E-4	45.000004	2
CTTATCG	40	6.8048394E-9	45.000004	12
TATAGCG	40	6.8048394E-9	45.000004	1
CACCCGT	20	7.0303824E-4	45.000004	16
TTTAGCG	25	3.8883994E-5	45.0	1
CGACGGT	55	1.8189894E-12	45.0	28
ACGTTAG	25	3.8883994E-5	45.0	1
CGTTCAT	35	1.2105374E-7	45.0	17
TAGCCGT	25	3.8883994E-5	45.0	44
ACGTGCG	25	3.8883994E-5	45.0	1
CTCGATC	35	1.2105374E-7	45.0	16
CGGTCTA	55	1.8189894E-12	45.0	31
TCGAGCG	25	3.8883994E-5	45.0	1
CCACGCA	25	3.8883994E-5	45.0	39
CGAATAT	80	0.0	42.187504	14
GACCTAT	75	0.0	42.0	33
CGTTTTT	4490	0.0	41.792873	1
TCACGAC	60	3.6379788E-12	41.249996	25
TGCACCA	105	0.0	40.714287	28
GCTGACG	50	1.0804797E-9	40.5	1