SRR3552211_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552211_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	245382
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15066	6.13981465633176	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCC	853	0.3476212599131151	No Hit
GCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGC	633	0.2579651319167665	RNA PCR Primer, Index 27 (95% over 23bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCG	509	0.20743167795518824	No Hit
CCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGC	468	0.1907230359195051	RNA PCR Primer, Index 38 (96% over 25bp)
GAATCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTC	449	0.18298000668345682	RNA PCR Primer, Index 38 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGC	439	0.17890472813816824	No Hit
CTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGCT	317	0.12918632988564768	RNA PCR Primer, Index 38 (96% over 26bp)
TCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGC	297	0.12103577279507054	RNA PCR Primer, Index 27 (95% over 23bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGC	273	0.11125510428637798	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCCGG	35	1.2067176E-7	45.000004	27
CACGCCG	35	1.2067176E-7	45.000004	26
CGTGGCA	20	7.022431E-4	45.0	15
GATCGAT	25	3.88181E-5	45.0	2
GCGGTTG	20	7.022431E-4	45.0	1
CATGCAC	50	2.1827873E-11	45.0	45
CGTTGTG	20	7.022431E-4	45.0	34
GTGATCG	20	7.022431E-4	45.0	38
CGACAGG	25	3.88181E-5	45.0	2
TCGATGC	25	3.88181E-5	45.0	4
TCGGAGA	20	7.022431E-4	45.0	42
CGAGGGT	20	7.022431E-4	45.0	4
CGAATGG	20	7.022431E-4	45.0	2
CGCACGG	25	3.88181E-5	45.0	2
ATCGGAG	20	7.022431E-4	45.0	41
GTAACGG	25	3.88181E-5	45.0	2
GTAAAAC	20	7.022431E-4	45.0	9
TGCGTAG	20	7.022431E-4	45.0	1
AGCAACG	30	2.1585001E-6	44.999996	10
TAGGGTC	30	2.1585001E-6	44.999996	5