SRR3552210_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552210_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	262824
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16889	6.425973274891182	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCC	853	0.3245517913128177	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCG	755	0.2872644811737132	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTC	702	0.26709889507807505	RNA PCR Primer, Index 38 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGC	657	0.2499771710346087	RNA PCR Primer, Index 27 (95% over 23bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGC	652	0.24807475725200134	No Hit
CCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGC	404	0.15371503363467567	RNA PCR Primer, Index 38 (96% over 25bp)
CTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGCT	314	0.11947158554774298	RNA PCR Primer, Index 38 (96% over 26bp)
TCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGC	287	0.10919855112166317	RNA PCR Primer, Index 27 (95% over 23bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGC	265	0.10082793047819073	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAAT	20	7.0233457E-4	45.000004	10
CAACGAG	35	1.2071541E-7	45.000004	14
ACGTTAT	20	7.0233457E-4	45.000004	23
CGTGCGG	20	7.0233457E-4	45.000004	2
TGGACGG	20	7.0233457E-4	45.000004	2
GACGTTA	20	7.0233457E-4	45.000004	22
CGGTTCG	20	7.0233457E-4	45.000004	30
TTGTCCG	20	7.0233457E-4	45.000004	25
GCGCAAG	20	7.0233457E-4	45.000004	1
ATCCGGG	20	7.0233457E-4	45.000004	3
TAGCACG	20	7.0233457E-4	45.000004	1
GCCGAAG	20	7.0233457E-4	45.000004	1
AGTGACG	20	7.0233457E-4	45.000004	11
TACCTTA	20	7.0233457E-4	45.000004	40
AACGAGC	35	1.2071541E-7	45.000004	15
GCGATGT	85	0.0	45.000004	9
CCGGTTC	20	7.0233457E-4	45.000004	29
CCGAAGG	20	7.0233457E-4	45.000004	2
GCTACGG	40	6.7811925E-9	45.000004	2
GGTTCGT	20	7.0233457E-4	45.000004	9