SRR3552206_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552206_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	433460
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18099	4.175471785170489	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCG	6923	1.597148525815531	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTC	6839	1.5777695750472938	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGC	6663	1.5371660591519403	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGC	2373	0.5474553592026946	No Hit
GAACTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCT	1501	0.34628339408480596	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCT	1431	0.33013426844460847	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCTACCATCGTA	1378	0.3179070733170304	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTC	1291	0.29783601716421354	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCC	1015	0.23416232178286345	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTT	634	0.1462649379412172	No Hit
CTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGCT	561	0.1294237069164398	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCTACCAT	465	0.10727633460988326	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGC	451	0.10404650948184378	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTA	20	7.028419E-4	45.0	38
CGTATGG	20	7.028419E-4	45.0	2
TTAGCCG	20	7.028419E-4	45.0	1
CGCATCG	20	7.028419E-4	45.0	21
ACTCGAA	20	7.028419E-4	45.0	11
ATAACGC	45	3.8380676E-10	45.0	11
TCGAAGC	20	7.028419E-4	45.0	13
TGCGTTG	20	7.028419E-4	45.0	1
CGCTTGT	20	7.028419E-4	45.0	39
GTACGAG	25	3.8867718E-5	45.0	1
CGTTTTT	6955	0.0	43.83537	1
TGCACGG	95	0.0	42.63158	2
CGTAAGG	75	0.0	42.0	2
TACGGCT	720	0.0	41.875	7
CGCATGG	55	6.002665E-11	40.909092	2
ACGGGTA	55	6.002665E-11	40.909092	5
ACGGCTG	745	0.0	40.4698	8
CACAACG	130	0.0	39.80769	12
ACCGGGT	40	3.451587E-7	39.375	4
TAGCCGT	80	0.0	39.375	44