##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552206_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 433460 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.0981866838924 30.0 25.0 33.0 16.0 33.0 2 28.730191943893324 31.0 28.0 33.0 16.0 34.0 3 28.567060397729893 31.0 28.0 33.0 16.0 34.0 4 32.43838647164675 35.0 32.0 35.0 28.0 37.0 5 33.75588058875098 35.0 33.0 35.0 30.0 37.0 6 33.44080422645688 35.0 33.0 36.0 28.0 37.0 7 34.35974945785078 35.0 35.0 37.0 32.0 37.0 8 34.38190144419323 35.0 35.0 37.0 31.0 37.0 9 36.286185576523785 39.0 35.0 39.0 31.0 39.0 10 36.146610990633505 37.0 35.0 39.0 32.0 39.0 11 36.24265214783371 37.0 35.0 39.0 32.0 39.0 12 36.12390301296544 37.0 35.0 39.0 31.0 39.0 13 36.30266921976653 37.0 35.0 39.0 32.0 39.0 14 37.38985142804411 39.0 36.0 40.0 32.0 41.0 15 37.45935265076362 39.0 36.0 41.0 32.0 41.0 16 37.28152770728556 39.0 36.0 41.0 32.0 41.0 17 36.32357080238084 38.0 34.0 40.0 30.0 41.0 18 36.021681354680936 38.0 34.0 39.0 30.0 41.0 19 35.48173303188299 37.0 34.0 39.0 29.0 41.0 20 35.79996539473077 37.0 34.0 39.0 31.0 40.0 21 36.27968901398053 37.0 35.0 39.0 32.0 41.0 22 36.68925621741337 38.0 35.0 40.0 32.0 41.0 23 36.93504129562128 38.0 35.0 40.0 33.0 41.0 24 36.83263968993679 38.0 35.0 40.0 33.0 41.0 25 36.12299174087575 38.0 35.0 40.0 31.0 41.0 26 36.305193097402295 38.0 35.0 40.0 31.0 41.0 27 36.661357449360956 38.0 35.0 40.0 33.0 41.0 28 36.594091727033636 38.0 35.0 40.0 32.0 41.0 29 36.59249065657731 38.0 35.0 40.0 32.0 41.0 30 36.19763992063858 38.0 35.0 40.0 31.0 41.0 31 36.06372214275827 38.0 35.0 40.0 31.0 41.0 32 35.75764776449961 38.0 35.0 40.0 30.0 41.0 33 35.35177871083837 38.0 35.0 40.0 25.0 41.0 34 34.976154662483275 38.0 35.0 40.0 22.0 41.0 35 34.729386794629264 38.0 35.0 40.0 20.0 41.0 36 34.471637521339915 38.0 35.0 40.0 18.0 41.0 37 34.38445069902644 38.0 35.0 40.0 18.0 41.0 38 34.20988557190975 38.0 34.0 40.0 17.0 41.0 39 34.038764822590316 38.0 34.0 40.0 16.0 41.0 40 33.81125132653532 38.0 34.0 40.0 15.0 41.0 41 33.59689936787708 38.0 33.0 40.0 15.0 41.0 42 33.635791076454574 38.0 33.0 40.0 15.0 41.0 43 33.55991556314308 38.0 33.0 40.0 15.0 41.0 44 33.4756955659115 37.0 33.0 40.0 13.0 41.0 45 33.4280879435242 37.0 33.0 40.0 14.0 41.0 46 33.270687029945094 37.0 33.0 40.0 13.0 41.0 47 33.22144603885018 37.0 33.0 40.0 14.0 41.0 48 33.19787292945139 37.0 33.0 40.0 15.0 41.0 49 33.18572647995202 37.0 33.0 40.0 13.0 41.0 50 33.08107322474969 36.0 33.0 40.0 13.0 41.0 51 31.33082406681124 35.0 29.0 38.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 12.0 9 19.0 10 28.0 11 17.0 12 17.0 13 22.0 14 24.0 15 52.0 16 95.0 17 199.0 18 422.0 19 672.0 20 995.0 21 1587.0 22 2319.0 23 3317.0 24 5015.0 25 7885.0 26 11229.0 27 12867.0 28 12165.0 29 11077.0 30 11261.0 31 13019.0 32 16426.0 33 23691.0 34 32733.0 35 43993.0 36 52257.0 37 73998.0 38 75299.0 39 20747.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.242975130346515 16.511788861717346 19.76514557283256 25.480090435103588 2 39.99607806948738 25.23485442716744 19.93840262077239 14.830664882572787 3 26.322382688137314 24.217228810040144 35.71955889816823 13.740829603654317 4 22.88284962857011 19.17062704747843 42.40898814192774 15.537535182023715 5 24.598809578738525 23.350020763161538 35.186176348451994 16.86499330964795 6 19.697549946938587 31.73441609375721 36.15489318506898 12.413140774235224 7 61.72703363632169 5.391270244082499 28.983527891847 3.898168227748812 8 61.074147556868 9.243067411064459 24.80597979052277 4.87680524154478 9 55.966409818668396 6.549162552484658 26.39805287685138 11.08637475199557 10 33.38208831264707 19.754763992063857 32.74627416601301 14.116873529276058 11 26.09329580584137 20.869745766622064 36.42435288146542 16.612605546071148 12 22.36607760808379 18.314954090342823 40.941032621233795 18.377935680339593 13 20.18317722511881 20.19725003460527 44.0751165044064 15.544456235869514 14 17.6939048585798 23.902320860056292 39.87818945231394 18.525584829049972 15 15.413417616389054 20.306141281779173 46.99303280579523 17.287408296036546 16 17.81179347575324 21.116365985327366 40.393115858441384 20.678724680478012 17 17.441978498592718 20.264153555114657 41.91805472246574 20.37581322382688 18 18.822498039034745 20.333594795367507 41.77040557375536 19.073501591842383 19 18.896553315184793 21.910902966825084 39.1039542287639 20.088589489226226 20 20.176486873067873 21.585844137867394 41.44442393761823 16.7932450514465 21 19.081576154662482 24.946015780002767 39.553822728740826 16.418585336593917 22 17.903612790107506 20.371429889724542 39.851889447699904 21.873067872468045 23 17.283717067318786 24.541134130023533 40.09066580537996 18.084482997277718 24 19.265214783371015 20.215244774604347 39.7060859133484 20.813454528676235 25 16.874221381442347 25.36750795921192 38.282886540857284 19.475384118488442 26 17.127993355788306 21.681123979144555 39.82097540718867 21.369907257878467 27 19.383564804134178 22.451206570387118 38.110321598302036 20.05490702717667 28 15.245466709731001 22.336086374751996 41.65251695658192 20.765929958935082 29 18.811424352881463 23.441147972131223 38.238822498039035 19.508605176948276 30 19.74345960411572 22.990125963179995 39.35541918516126 17.910995247543028 31 20.39334656023624 21.645365200941264 36.034928251741796 21.926359987080698 32 19.940248235131268 24.29220689336963 37.21427582706593 18.553269044433165 33 18.163613712914685 24.2266875836294 34.48784201541088 23.121856688045035 34 18.50828219443547 25.034374567434135 34.93217367231117 21.525169565819223 35 19.192543717990127 24.1085682646611 33.92654454851659 22.772343468832187 36 18.85410418493056 28.863332256724956 31.540626586074836 20.741936972269645 37 19.822821021547547 24.339731463110784 35.54261062151063 20.294836893831032 38 18.623633091865454 27.16467494117104 31.242559867115766 22.969132099847737 39 19.796751718728373 24.122871775942418 33.68638398006736 22.393992525261847 40 20.06298158999677 24.43570340977253 33.75905504544826 21.742259954782448 41 17.608775896276473 26.505098509666404 31.429197619157478 24.456927974899646 42 19.518525354127256 23.57103308263738 34.240068287731276 22.670373275504083 43 20.66049923868408 25.33013426844461 32.25580215014073 21.753564342730584 44 19.950399114105107 23.39731463110783 33.7461357449361 22.906150509850967 45 19.372260416186037 22.483274119872654 33.421076915978404 24.723388547962905 46 21.6739722235039 24.81013242283025 32.68790661191344 20.82798874175241 47 17.330088128085634 23.713376090065978 37.911456651132745 21.04507913071564 48 18.861255940571215 24.841738568726065 33.68707608545194 22.609929405250774 49 19.006136667743277 21.93743367323398 37.36930743321183 21.687122225810917 50 18.51035851058921 22.31440040603516 35.662575554837815 23.512665528537813 51 18.131546163429153 21.876066995801228 33.18322336547778 26.809163475291836 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 458.0 1 1108.0 2 1758.0 3 14726.0 4 27694.0 5 17528.0 6 7362.0 7 6964.5 8 6567.0 9 6373.5 10 6180.0 11 5917.0 12 5654.0 13 5389.5 14 5125.0 15 4777.5 16 4430.0 17 4106.5 18 3783.0 19 3574.5 20 3366.0 21 3449.5 22 3533.0 23 3713.5 24 3894.0 25 3714.0 26 3959.0 27 4384.0 28 4734.5 29 5085.0 30 5651.0 31 6217.0 32 7059.5 33 7902.0 34 8471.5 35 9041.0 36 9550.5 37 10060.0 38 10967.5 39 11875.0 40 12942.5 41 14010.0 42 15433.0 43 16856.0 44 18708.0 45 20560.0 46 36680.0 47 52800.0 48 42152.5 49 31505.0 50 31053.5 51 30602.0 52 27445.5 53 24289.0 54 22004.0 55 19719.0 56 18659.0 57 17599.0 58 16349.5 59 15100.0 60 14560.5 61 14021.0 62 13160.0 63 12299.0 64 10898.5 65 9498.0 66 7874.5 67 6251.0 68 5140.0 69 4029.0 70 3348.0 71 2667.0 72 2208.5 73 1750.0 74 1345.0 75 724.5 76 509.0 77 385.5 78 262.0 79 193.5 80 125.0 81 102.5 82 80.0 83 60.5 84 41.0 85 28.0 86 15.0 87 12.0 88 9.0 89 10.5 90 12.0 91 8.5 92 5.0 93 3.5 94 2.0 95 2.0 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 433460.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.697866192057404 #Duplication Level Percentage of deduplicated Percentage of total 1 77.06013796222621 30.591230455659392 2 8.282158822557003 6.575680654384712 3 3.1663838164057614 3.770960431691159 4 1.9517696212149462 3.09924357042854 5 1.3940672711374247 2.7670747996170046 6 1.1738540138383176 2.7959699742217814 7 1.0132494040378275 2.815668748247291 8 0.8868800262972197 2.81657956898843 9 0.7290526058598964 2.6047649514957234 >10 4.232992265627546 26.646412820975733 >50 0.07433519909801005 2.0445195573352 >100 0.02809519335987782 2.154192614621507 >500 0.0011706330566615757 0.2776680157990185 >1k 0.0035118991699847274 2.0886676100563832 >5k 0.0017559495849923637 4.745915667527158 >10k+ 5.853165283307879E-4 4.205450558950993 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18099 4.175471785170489 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCG 6923 1.597148525815531 No Hit GAATCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTC 6839 1.5777695750472938 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGC 6663 1.5371660591519403 No Hit GCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGC 2373 0.5474553592026946 No Hit GAACTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCT 1501 0.34628339408480596 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCT 1431 0.33013426844460847 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCTACCATCGTA 1378 0.3179070733170304 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTC 1291 0.29783601716421354 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCC 1015 0.23416232178286345 No Hit GAATGCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTT 634 0.1462649379412172 No Hit CTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGCT 561 0.1294237069164398 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCTACCAT 465 0.10727633460988326 No Hit CCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGC 451 0.10404650948184378 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.6140358971992804E-4 0.0 0.0 0.1416509020440179 0.0 2 4.6140358971992804E-4 0.0 0.0 0.9777142066165275 0.0 3 4.6140358971992804E-4 0.0 0.0 1.185345821990495 0.0 4 4.6140358971992804E-4 0.0 0.0 1.7791722419600424 0.0 5 4.6140358971992804E-4 0.0 0.0 4.059428782355926 0.0 6 4.6140358971992804E-4 0.0 0.0 4.641720112582476 0.0 7 4.6140358971992804E-4 0.0 0.0 5.440871129977391 0.0 8 4.6140358971992804E-4 0.0 0.0 6.484566049923869 0.0 9 4.6140358971992804E-4 0.0 0.0 6.819545056060536 0.0 10 4.6140358971992804E-4 0.0 0.0 9.202463895169105 0.0 11 4.6140358971992804E-4 0.0 0.0 10.31790707331703 0.0 12 4.6140358971992804E-4 0.0 0.0 12.767729432934988 0.0 13 4.6140358971992804E-4 0.0 0.0 13.237899690859594 0.0 14 4.6140358971992804E-4 0.0 0.0 13.441840077515803 0.0 15 4.6140358971992804E-4 0.0 0.0 14.035435795690491 0.0 16 4.6140358971992804E-4 0.0 0.0 14.595118350020764 0.0 17 4.6140358971992804E-4 0.0 0.0 15.220089512296406 0.0 18 4.6140358971992804E-4 0.0 0.0 15.900890508928159 0.0 19 4.6140358971992804E-4 0.0 0.0 16.41166428274812 0.0 20 4.6140358971992804E-4 0.0018456143588797122 0.0 16.84561435887971 0.0 21 4.6140358971992804E-4 0.0018456143588797122 0.0 17.295944262446362 0.0 22 4.6140358971992804E-4 0.0018456143588797122 0.0 17.791953121395284 0.0 23 4.6140358971992804E-4 0.0018456143588797122 0.0 18.262123379319892 0.0 24 4.6140358971992804E-4 0.0018456143588797122 0.0 18.65477783417155 0.0 25 4.6140358971992804E-4 0.0018456143588797122 0.0 18.994140174410557 0.0 26 4.6140358971992804E-4 0.0018456143588797122 0.0 19.330272689521525 0.0 27 4.6140358971992804E-4 0.0018456143588797122 0.0 19.68301573386241 0.0 28 4.6140358971992804E-4 0.0018456143588797122 0.0 20.031836847690673 0.0 29 4.6140358971992804E-4 0.0018456143588797122 0.0 20.38734831356988 0.0 30 4.6140358971992804E-4 0.0018456143588797122 0.0 20.800304526369214 0.0 31 4.6140358971992804E-4 0.0018456143588797122 0.0 21.168735292760577 0.0 32 4.6140358971992804E-4 0.0018456143588797122 0.0 21.554930097356156 0.0 33 4.6140358971992804E-4 0.0018456143588797122 0.0 21.954967009643337 0.0 34 4.6140358971992804E-4 0.0018456143588797122 0.0 22.329165320906196 0.0 35 4.6140358971992804E-4 0.0018456143588797122 0.0 22.723203986527015 0.0 36 4.6140358971992804E-4 0.0018456143588797122 0.0 23.088866331380057 0.0 37 4.6140358971992804E-4 0.0018456143588797122 0.0 23.45291376366908 0.0 38 4.6140358971992804E-4 0.0018456143588797122 0.0 23.856641904674017 0.0 39 4.6140358971992804E-4 0.0018456143588797122 0.0 24.28897706824159 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTTA 20 7.028419E-4 45.0 38 CGTATGG 20 7.028419E-4 45.0 2 TTAGCCG 20 7.028419E-4 45.0 1 CGCATCG 20 7.028419E-4 45.0 21 ACTCGAA 20 7.028419E-4 45.0 11 ATAACGC 45 3.8380676E-10 45.0 11 TCGAAGC 20 7.028419E-4 45.0 13 TGCGTTG 20 7.028419E-4 45.0 1 CGCTTGT 20 7.028419E-4 45.0 39 GTACGAG 25 3.8867718E-5 45.0 1 CGTTTTT 6955 0.0 43.83537 1 TGCACGG 95 0.0 42.63158 2 CGTAAGG 75 0.0 42.0 2 TACGGCT 720 0.0 41.875 7 CGCATGG 55 6.002665E-11 40.909092 2 ACGGGTA 55 6.002665E-11 40.909092 5 ACGGCTG 745 0.0 40.4698 8 CACAACG 130 0.0 39.80769 12 ACCGGGT 40 3.451587E-7 39.375 4 TAGCCGT 80 0.0 39.375 44 >>END_MODULE