SRR3552205_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552205_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	450573
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21772	4.832069387202518	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCG	8051	1.7868358734322738	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGC	7398	1.6419093021552558	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTC	6618	1.4687963992516195	No Hit
GCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	2661	0.5905813264443276	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTA	2084	0.46252216621945835	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGAGGCATT	1957	0.4343358345928407	No Hit
GAACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCT	1682	0.3733024393383536	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCT	1450	0.32181244770547723	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCC	1277	0.2834168935999272	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTC	1193	0.2647739655949203	No Hit
CTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGCT	648	0.14381687318148223	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGT	548	0.12162291127075968	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATG	457	0.10142640593200213	No Hit
CCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	452	0.10031670783646601	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	20	7.0287165E-4	45.0	1
ACACCGC	20	7.0287165E-4	45.0	33
TTATGCG	20	7.0287165E-4	45.0	1
CGTCTGG	20	7.0287165E-4	45.0	2
ACGGGTG	25	3.8870166E-5	45.0	5
CTGCGTC	35	1.2097371E-7	45.0	37
ACGGCTA	25	3.8870166E-5	45.0	30
GTCACGC	35	1.2097371E-7	45.0	41
CGTAAGG	35	1.2097371E-7	45.0	2
TTACGCG	25	3.8870166E-5	45.0	1
TACACGG	35	1.2097371E-7	45.0	2
GCGTAAG	20	7.0287165E-4	45.0	1
GACTAAT	25	3.8870166E-5	45.0	9
GGCTACG	20	7.0287165E-4	45.0	1
CGGCTAT	30	2.1625528E-6	44.999996	31
CGTTTTT	9535	0.0	44.150497	1
TACGGCT	900	0.0	41.5	7
ACGGCTG	905	0.0	41.27072	8
GAATGAC	220	0.0	40.909092	1
ATCTACG	45	1.9237632E-8	40.000004	24