##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552205_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 450573 Sequences flagged as poor quality 0 Sequence length 51 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.445898888748328 28.0 16.0 31.0 16.0 33.0 2 26.739784674181543 30.0 25.0 33.0 16.0 33.0 3 27.096026614999122 31.0 25.0 33.0 16.0 33.0 4 29.566676210070288 32.0 28.0 35.0 19.0 37.0 5 32.191114425409424 33.0 32.0 35.0 28.0 37.0 6 30.94556043082919 35.0 30.0 35.0 17.0 37.0 7 33.17693470314466 35.0 32.0 35.0 28.0 37.0 8 33.2823049761082 35.0 33.0 37.0 28.0 37.0 9 35.2101612835212 37.0 34.0 39.0 30.0 39.0 10 35.3041571510055 37.0 34.0 39.0 30.0 39.0 11 35.400419022000875 37.0 34.0 39.0 30.0 39.0 12 35.29459377281817 37.0 34.0 39.0 27.0 39.0 13 35.47942730700686 37.0 34.0 39.0 30.0 39.0 14 35.82002916286595 38.0 34.0 40.0 27.0 41.0 15 36.34638782172922 38.0 34.0 40.0 30.0 41.0 16 36.13946019845841 38.0 34.0 40.0 28.0 41.0 17 35.72644832246939 38.0 34.0 40.0 27.0 41.0 18 35.561997722899505 38.0 34.0 39.0 27.0 40.0 19 34.8924325248073 37.0 33.0 39.0 27.0 40.0 20 35.014266278716214 35.0 34.0 39.0 30.0 40.0 21 35.449438825673084 36.0 34.0 39.0 30.0 40.0 22 36.05652136279804 37.0 35.0 39.0 31.0 40.0 23 36.462659768783304 38.0 35.0 40.0 32.0 41.0 24 36.3909177869069 38.0 35.0 40.0 32.0 41.0 25 34.814460697822554 35.0 34.0 39.0 27.0 41.0 26 35.20217589602573 36.0 34.0 39.0 29.0 40.0 27 35.77190821465112 37.0 35.0 39.0 31.0 41.0 28 35.790307009075114 37.0 35.0 40.0 31.0 41.0 29 35.8838811912831 37.0 35.0 40.0 30.0 41.0 30 34.90362493979888 36.0 34.0 40.0 27.0 41.0 31 34.84694156107889 36.0 34.0 40.0 27.0 41.0 32 34.45234179589101 37.0 34.0 40.0 24.0 40.0 33 34.237213503694186 37.0 34.0 40.0 21.0 41.0 34 33.9061062247405 38.0 34.0 40.0 18.0 41.0 35 33.62430283217148 38.0 33.0 40.0 15.0 41.0 36 33.304363554851264 37.0 33.0 40.0 12.0 41.0 37 33.3530304745291 38.0 33.0 40.0 10.0 41.0 38 33.074664926660056 37.0 33.0 40.0 11.0 41.0 39 32.9594538509853 37.0 33.0 40.0 10.0 41.0 40 32.6870185297388 37.0 32.0 40.0 10.0 41.0 41 32.48014861076896 36.0 31.0 40.0 10.0 41.0 42 32.721332614248965 37.0 33.0 40.0 10.0 41.0 43 32.70663133387931 37.0 33.0 40.0 10.0 41.0 44 32.795238507411675 37.0 33.0 40.0 10.0 41.0 45 32.803170629398565 37.0 33.0 40.0 10.0 41.0 46 32.62726572608656 36.0 33.0 40.0 10.0 41.0 47 32.53225337514676 36.0 32.0 40.0 10.0 41.0 48 32.54746955543275 36.0 32.0 40.0 10.0 41.0 49 32.65180115097886 36.0 33.0 40.0 10.0 41.0 50 32.57530966125356 36.0 32.0 40.0 10.0 41.0 51 31.606760724677244 35.0 30.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 11.0 9 15.0 10 20.0 11 23.0 12 25.0 13 34.0 14 38.0 15 72.0 16 88.0 17 234.0 18 486.0 19 924.0 20 1508.0 21 2344.0 22 3103.0 23 4664.0 24 7086.0 25 11051.0 26 14650.0 27 15646.0 28 14969.0 29 14271.0 30 15626.0 31 18760.0 32 24378.0 33 31010.0 34 38134.0 35 59934.0 36 67643.0 37 66970.0 38 33699.0 39 3155.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.044847338832994 13.767136512840317 17.10910329735692 28.07891285096977 2 45.06239832391199 23.00603897703591 17.405392688865067 14.526170010187029 3 24.96177090060878 22.52687133938341 38.631032041422806 13.880325718585002 4 21.611814289804315 17.770039483058238 45.536905229563246 15.0812409975742 5 24.903844660021797 21.22364189598578 37.95966469362345 15.912848750368974 6 19.328055609190965 28.825961608884686 39.36387666371487 12.48210611820948 7 56.51093163593912 4.907750797318081 34.74375961275975 3.8375579539830396 8 55.485792535282854 10.263597685613652 28.799550794210926 5.45105898489257 9 50.840596307368614 5.949757309026507 29.937213281754566 13.27243310185031 10 31.584449134768395 18.416771533136693 36.4469242497886 13.551855082306307 11 26.558404520466162 18.913694340317775 39.527224223377786 15.000676915838277 12 20.86343389417475 17.805549822115395 43.015005337647835 18.316010946062015 13 20.588894585339112 18.79318112714255 46.782430371992994 13.835493915525344 14 17.319945935508784 22.952773468450175 42.42242655463155 17.304854041409495 15 15.175343396075663 18.7578927277045 49.191362997782825 16.875400878437013 16 17.517472196514216 19.751072523209338 42.58111338229321 20.150341897983235 17 17.78668495449128 19.960805463265665 44.49645229518857 17.75605728705448 18 18.243214750994845 18.70840019264359 44.621182361126834 18.427202695234733 19 17.827965723645224 20.678336251839326 42.366497770616526 19.127200253898923 20 19.76993739083345 21.301542702292416 45.18202377861079 13.746496128263344 21 18.336873270258096 24.173441373539912 42.37448759690439 15.115197759297605 22 16.904031089301842 19.14428960457018 44.335546071335834 19.616133234792144 23 16.84987782223968 23.121891458209877 43.87169226740173 16.15653845214871 24 18.31223797253719 19.962137100980307 42.62794264192484 19.097682284557663 25 16.70206603591427 23.99145088587199 41.2876492821363 18.018833796077438 26 16.281490457706077 19.265468636602726 44.41788567002462 20.035155235666586 27 18.873301329640256 20.953985258770498 41.57483914926105 18.59787426232819 28 14.053216681869529 22.18353074862453 45.051301342956634 18.711951226549306 29 18.701298124832157 19.777261398263988 43.4497850514789 18.07165542542496 30 19.547775832107117 21.982453453713383 42.81747907664241 15.652291637537092 31 20.07798958215428 21.861940240538157 39.4752903525067 18.584779824800865 32 22.498241128518575 22.877979816811038 39.030745295434926 15.59303375923546 33 20.62196358858609 20.947105130578176 37.33090975269268 21.100021528143053 34 19.432145290552253 22.48891966451607 39.59691326377745 18.48202178115422 35 20.6068716944868 24.028292862643788 36.54524350105311 18.81959194181631 36 19.17469533238787 26.785004871574642 37.336902122408574 16.70339767362891 37 22.269421381219026 25.030128303293807 35.08865378085238 17.611796534634788 38 21.862162180157267 27.402884771169155 32.49884036549017 18.236112683183414 39 23.322968753121025 22.466503762986243 33.96785870436089 20.24266877953184 40 22.509560049093043 23.799916994582453 35.37073903673766 18.319783919586836 41 18.525521946499236 24.594904710224537 35.39160136093374 21.487971982342486 42 19.815878891988646 24.685012195582072 36.93741080801557 18.56169810441371 43 21.433152896423 22.154234718902373 36.03411655824916 20.378495826425464 44 21.254269563422575 22.22192630273008 34.96037268100841 21.56343145283894 45 19.860044876190983 22.55061887862788 34.643886784161495 22.945449461019635 46 22.774334014687962 23.694495675506523 34.62324639958453 18.907923910220987 47 17.84527701393559 23.181593215749725 40.562572546512996 18.410557223801693 48 18.98981962967155 24.018527519403072 35.633293606141514 21.358359244783863 49 19.343813322147575 21.39298182536459 39.24536090711161 20.01784394537622 50 19.023110572537636 21.200116296360413 37.82383764672983 21.952935484372123 51 18.2356688039452 20.820821487306162 35.806850388283365 25.136659320465277 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 323.0 1 946.0 2 1569.0 3 18478.5 4 35388.0 5 22478.5 6 9569.0 7 8849.5 8 8130.0 9 7844.0 10 7558.0 11 7094.5 12 6631.0 13 6350.5 14 6070.0 15 5651.5 16 5233.0 17 4888.0 18 4543.0 19 4231.5 20 3920.0 21 4001.0 22 4082.0 23 4033.5 24 3985.0 25 4018.5 26 4293.5 27 4535.0 28 4865.0 29 5195.0 30 5886.5 31 6578.0 32 7047.0 33 7516.0 34 8260.5 35 9005.0 36 9748.0 37 10491.0 38 10994.0 39 11497.0 40 12675.5 41 13854.0 42 15497.0 43 17140.0 44 18816.0 45 20492.0 46 36705.0 47 52918.0 48 42721.0 49 32524.0 50 32259.0 51 31994.0 52 28663.5 53 25333.0 54 23380.0 55 21427.0 56 19710.0 57 17993.0 58 16449.0 59 14905.0 60 13855.0 61 12805.0 62 11729.0 63 10653.0 64 9503.5 65 8354.0 66 7008.0 67 5662.0 68 4532.5 69 3403.0 70 2839.5 71 2276.0 72 1830.5 73 1385.0 74 1118.0 75 623.5 76 396.0 77 287.5 78 179.0 79 131.0 80 83.0 81 63.0 82 43.0 83 26.5 84 10.0 85 11.0 86 12.0 87 10.0 88 8.0 89 5.0 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 450573.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.38883857536938 #Duplication Level Percentage of deduplicated Percentage of total 1 77.64748458168678 32.91386689716603 2 8.430263512060005 7.146981583210761 3 3.4894707585278693 4.437438380901288 4 2.1805804669034408 3.697290936486941 5 1.588025684431505 3.365728219545377 6 1.2424316711981804 3.1599141330807643 7 0.9708198706198703 2.8806348747026664 8 0.7482013920525961 2.537231042366732 9 0.6320000377312055 2.411077282111388 >10 2.9540066596044645 19.685643870936293 >50 0.07692603614405931 2.2845876779823264 >100 0.03289251200642504 2.5850315344430213 >500 0.0010610487744008078 0.26896021880764276 >1k 0.003713670710402827 2.7669619834525387 >5k 0.0015915731616012116 4.962495943501883 >10k+ 5.305243872004039E-4 4.896155421304346 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21772 4.832069387202518 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCG 8051 1.7868358734322738 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGC 7398 1.6419093021552558 No Hit GAATCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTC 6618 1.4687963992516195 No Hit GCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC 2661 0.5905813264443276 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTA 2084 0.46252216621945835 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGAGGCATT 1957 0.4343358345928407 No Hit GAACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCT 1682 0.3733024393383536 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCT 1450 0.32181244770547723 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCC 1277 0.2834168935999272 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTC 1193 0.2647739655949203 No Hit CTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGCT 648 0.14381687318148223 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGT 548 0.12162291127075968 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATG 457 0.10142640593200213 No Hit CCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC 452 0.10031670783646601 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.15180669946934236 0.0 2 0.0 0.0 0.0 0.9767562636909003 0.0 3 0.0 0.0 0.0 1.1733947662199022 0.0 4 0.0 0.0 0.0 1.7974889751494207 0.0 5 0.0 0.0 0.0 3.9405379372487923 0.0 6 0.0 0.0 0.0 4.378424805747349 0.0 7 0.0 0.0 0.0 5.116374039278874 0.0 8 0.0 0.0 0.0 5.99991566294474 0.0 9 0.0 0.0 0.0 6.29909026950128 0.0 10 0.0 0.0 0.0 8.83497235742044 0.0 11 0.0 0.0 0.0 9.920479034473882 0.0 12 0.0 0.0 0.0 12.497419951927878 0.0 13 0.0 0.0 0.0 12.944406344809831 0.0 14 0.0 0.0 0.0 13.176111307157775 0.0 15 0.0 0.0 0.0 13.928264676312162 0.0 16 0.0 0.0 0.0 14.511078116087738 0.0 17 0.0 0.0 0.0 15.112312544249212 0.0 18 0.0 0.0 0.0 15.77080739414035 0.0 19 0.0 0.0 0.0 16.63881324446871 0.0 20 0.0 0.0 0.0 17.114429848215494 0.0 21 0.0 0.0 0.0 17.555423871381553 0.0 22 0.0 0.0 0.0 18.087191198762465 0.0 23 0.0 0.0 0.0 18.54039190097942 0.0 24 0.0 0.0 0.0 18.926344898606885 0.0 25 0.0 0.0 0.0 19.265468636602726 0.0 26 0.0 0.0 0.0 19.584395869259808 0.0 27 0.0 0.0 0.0 19.96280291983763 0.0 28 0.0 0.0 0.0 20.302370537071685 0.0 29 0.0 0.0 0.0 20.632838629922343 0.0 30 0.0 0.0 0.0 21.053636147749643 0.0 31 0.0 0.0 0.0 21.416063545751744 0.0 32 0.0 0.0 0.0 21.788478226613666 0.0 33 0.0 0.0 0.0 22.16333424328577 0.0 34 0.0 0.0 0.0 22.54662396548395 0.0 35 0.0 0.0 0.0 22.92658459339552 0.0 36 0.0 0.0 0.0 23.28812423292119 0.0 37 0.0 0.0 0.0 23.653658785590792 0.0 38 0.0 0.0 0.0 24.0471577302679 0.0 39 0.0 0.0 0.0 24.521886575538257 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGCG 20 7.0287165E-4 45.0 1 ACACCGC 20 7.0287165E-4 45.0 33 TTATGCG 20 7.0287165E-4 45.0 1 CGTCTGG 20 7.0287165E-4 45.0 2 ACGGGTG 25 3.8870166E-5 45.0 5 CTGCGTC 35 1.2097371E-7 45.0 37 ACGGCTA 25 3.8870166E-5 45.0 30 GTCACGC 35 1.2097371E-7 45.0 41 CGTAAGG 35 1.2097371E-7 45.0 2 TTACGCG 25 3.8870166E-5 45.0 1 TACACGG 35 1.2097371E-7 45.0 2 GCGTAAG 20 7.0287165E-4 45.0 1 GACTAAT 25 3.8870166E-5 45.0 9 GGCTACG 20 7.0287165E-4 45.0 1 CGGCTAT 30 2.1625528E-6 44.999996 31 CGTTTTT 9535 0.0 44.150497 1 TACGGCT 900 0.0 41.5 7 ACGGCTG 905 0.0 41.27072 8 GAATGAC 220 0.0 40.909092 1 ATCTACG 45 1.9237632E-8 40.000004 24 >>END_MODULE