SRR3552202_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552202_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	339783
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10269	3.022223007036844	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCG	3712	1.0924619536586586	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTC	3404	1.0018158648313777	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGC	2995	0.8814449222003455	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	1343	0.39525226394492957	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCT	690	0.20307078341176574	No Hit
GAACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCT	668	0.19659606278124567	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTA	576	0.16951995832634356	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTC	552	0.16245662672941258	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCC	496	0.14597551966990696	No Hit
CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT	361	0.10624427943717019	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	356	0.1047727520211429	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGTA	35	1.2085547E-7	45.000004	5
GCCAACG	35	1.2085547E-7	45.000004	1
CGGGTAT	20	7.026265E-4	45.0	6
TTAGGCG	20	7.026265E-4	45.0	1
CTCACGA	25	3.884986E-5	45.0	6
TTGGACG	20	7.026265E-4	45.0	1
CGAAAGG	20	7.026265E-4	45.0	2
ATGTGCG	25	3.884986E-5	45.0	1
GACGTAG	20	7.026265E-4	45.0	1
TATATCG	20	7.026265E-4	45.0	18
CACGATC	20	7.026265E-4	45.0	8
CGATTCG	20	7.026265E-4	45.0	23
CTACGAC	20	7.026265E-4	45.0	5
GCGATAC	40	6.7902874E-9	45.0	9
TCGTAAG	20	7.026265E-4	45.0	1
ACGTAGG	40	6.7902874E-9	45.0	2
TAGGCGG	25	3.884986E-5	45.0	2
ACGTAAG	25	3.884986E-5	45.0	1
CCAACGG	40	6.7902874E-9	45.0	2
CGATCAT	20	7.026265E-4	45.0	10