SRR3552201_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552201_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	277111
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7609	2.7458310929555303	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCG	3937	1.4207303210626787	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGC	3703	1.336287624814605	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTC	3452	1.2457102027707307	Illumina PCR Primer Index 7 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC	1324	0.4777868796258539	Illumina PCR Primer Index 7 (96% over 27bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAGCATCTCGTA	981	0.35400976504000203	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCC	872	0.314675346702224	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAGCATCT	862	0.31106668446940033	No Hit
GAACTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCT	755	0.2724539985781871	Illumina PCR Primer Index 7 (96% over 25bp)
GAATGACTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCT	723	0.26090627943315137	Illumina PCR Primer Index 7 (95% over 22bp)
GAATGATCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTC	624	0.22518052332819702	Illumina PCR Primer Index 7 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGCT	467	0.16852452627286538	Illumina PCR Primer Index 7 (96% over 28bp)
CCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC	400	0.1443464893129468	Illumina PCR Primer Index 7 (96% over 27bp)
GAATGATACGGCCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATG	279	0.1006816762957804	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCCTCG	20	7.0240116E-4	45.0	40
CGACGGT	20	7.0240116E-4	45.0	28
CGTGCGG	40	6.7830115E-9	45.0	2
TATGCGG	20	7.0240116E-4	45.0	2
CGGGCTA	20	7.0240116E-4	45.0	6
GTGTACG	20	7.0240116E-4	45.0	1
CGAATAT	20	7.0240116E-4	45.0	14
AGTTAAC	20	7.0240116E-4	45.0	43
CGGCTAT	45	3.8198777E-10	45.0	31
CGCAATC	40	6.7830115E-9	45.0	20
TGTACGG	35	1.2074634E-7	45.0	2
AATCGCG	20	7.0240116E-4	45.0	1
AGGGCGC	30	2.1595188E-6	44.999996	6
CGTTTAT	30	2.1595188E-6	44.999996	39
CGTTTTT	3570	0.0	43.739494	1
ATGGGTA	65	0.0	41.53846	5
CGATGAA	325	0.0	40.846153	19
ACGGCTG	470	0.0	40.69149	8
TAGCCGT	50	1.0750227E-9	40.5	44
CCGATGA	330	0.0	40.227276	18