SRR3552200_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552200_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	301763
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8357	2.769391873755232	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCG	5425	1.7977684474239717	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTC	5009	1.6599119176307235	Illumina PCR Primer Index 7 (95% over 24bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGC	4725	1.5657983251757175	No Hit
GCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC	1449	0.48017815305388667	Illumina PCR Primer Index 7 (96% over 27bp)
GAATGACTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCT	1065	0.3529259717062728	Illumina PCR Primer Index 7 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCT	1020	0.3380136067045993	Illumina PCR Primer Index 7 (96% over 25bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAGCATCTCGTA	963	0.3191246110358129	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTC	879	0.2912881963660223	Illumina PCR Primer Index 7 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCC	853	0.2826721632539443	No Hit
CTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGCT	476	0.157739683128813	Illumina PCR Primer Index 7 (96% over 28bp)
CCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC	403	0.13354851323720934	Illumina PCR Primer Index 7 (96% over 27bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAGCATCT	322	0.10670625623419705	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGCCG	25	3.8839455E-5	45.000004	12
CAATTGG	25	3.8839455E-5	45.000004	2
GCCAGTA	105	0.0	45.000004	25
CGGAATG	20	7.0250104E-4	45.0	6
TCGTTTA	35	1.2079545E-7	45.0	38
CGAACGG	20	7.0250104E-4	45.0	2
ACGTTAG	20	7.0250104E-4	45.0	1
CGCATCG	35	1.2079545E-7	45.0	21
ATAGCGG	40	6.7866495E-9	45.0	2
CTAAGTA	20	7.0250104E-4	45.0	40
TATGCGG	35	1.2079545E-7	45.0	2
CGTTAGG	40	6.7866495E-9	45.0	2
AGGTTGC	20	7.0250104E-4	45.0	10
CACTAGA	20	7.0250104E-4	45.0	24
GCGATTT	20	7.0250104E-4	45.0	9
GCGATAT	35	1.2079545E-7	45.0	9
ATGGTCG	35	1.2079545E-7	45.0	44
CTCTCTA	20	7.0250104E-4	45.0	15
CGATAGA	20	7.0250104E-4	45.0	10
CACCCGT	20	7.0250104E-4	45.0	16