SRR3552198_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552198_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	603398
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26179	4.338595752720427	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCG	3334	0.5525374628354751	No Hit
GAATCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTC	3318	0.5498858133437632	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGC	2717	0.45028322931133347	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCC	1883	0.31206599955584874	No Hit
GCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC	1577	0.2613532030268579	No Hit
GAACTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCT	912	0.15114402102758048	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCT	755	0.12512471039015707	No Hit
CTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGCT	700	0.11600966526239728	TruSeq Adapter, Index 15 (95% over 23bp)
CGTTTTTTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCG	668	0.1107063662789734	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGC	666	0.11037491009250942	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTC	611	0.10125986496474963	No Hit
CCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC	610	0.10109413687151765	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGAT	35	1.2106466E-7	45.0	4
TAACGCC	40	6.8066583E-9	45.0	12
GCCGATA	20	7.03062E-4	45.0	9
GTATGCG	20	7.03062E-4	45.0	1
ACCGTCC	20	7.03062E-4	45.0	27
CCAGTCG	40	6.8066583E-9	45.0	28
CGTTTTT	11780	0.0	43.624786	1
ATTGCGG	55	6.002665E-11	40.909092	2
ATAACGC	45	1.925764E-8	40.0	11
CGGTAGT	45	1.925764E-8	40.0	12
GCGTAAG	45	1.925764E-8	40.0	1
AGCCGTT	125	0.0	39.6	45
CACGACC	105	0.0	38.57143	27
AGGTATA	35	6.2433573E-6	38.571426	6
TAGCCGT	130	0.0	38.07692	44
GTTTTTT	14025	0.0	37.925133	2
AAGTACG	30	1.1392791E-4	37.500004	1
CCGCTTG	30	1.1392791E-4	37.500004	39
TCGATGG	30	1.1392791E-4	37.500004	2
ATCGTTC	30	1.1392791E-4	37.500004	28