##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552198_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 603398 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.91225691831925 30.0 25.0 33.0 16.0 33.0 2 28.714283109987107 31.0 28.0 33.0 16.0 34.0 3 28.54057355178506 31.0 27.0 33.0 16.0 34.0 4 32.34051654132099 35.0 32.0 35.0 28.0 37.0 5 33.778981700303945 35.0 33.0 35.0 30.0 37.0 6 33.452150984922056 35.0 33.0 36.0 28.0 37.0 7 34.438746896741456 35.0 35.0 37.0 32.0 37.0 8 34.55594980427512 35.0 35.0 37.0 32.0 37.0 9 36.48725716691139 39.0 35.0 39.0 32.0 39.0 10 36.301603585030115 37.0 35.0 39.0 32.0 39.0 11 36.44970981010875 38.0 35.0 39.0 32.0 39.0 12 36.35441449921942 37.0 35.0 39.0 32.0 39.0 13 36.62981978727142 38.0 35.0 39.0 32.0 39.0 14 37.61630300398742 39.0 37.0 40.0 33.0 41.0 15 37.83777042681613 39.0 37.0 41.0 33.0 41.0 16 37.56342082671802 39.0 36.0 41.0 32.0 41.0 17 36.624387220375276 38.0 35.0 40.0 30.0 41.0 18 36.31722014325536 38.0 35.0 39.0 30.0 41.0 19 35.73943897725879 37.0 34.0 39.0 30.0 41.0 20 36.09264366139762 37.0 35.0 39.0 31.0 41.0 21 36.40301260527877 38.0 35.0 40.0 32.0 41.0 22 36.79237750207989 38.0 35.0 40.0 33.0 41.0 23 37.03807437213912 38.0 35.0 40.0 33.0 41.0 24 36.9385645958389 38.0 35.0 40.0 33.0 41.0 25 36.15990275075489 38.0 35.0 40.0 31.0 41.0 26 36.387043046214934 38.0 35.0 40.0 31.0 41.0 27 36.744180458006156 38.0 35.0 40.0 33.0 41.0 28 36.68462606770324 38.0 35.0 40.0 33.0 41.0 29 36.69777493462027 38.0 35.0 40.0 33.0 41.0 30 36.24372304846884 38.0 35.0 40.0 31.0 41.0 31 36.02515089542889 38.0 35.0 40.0 31.0 41.0 32 35.68573976048976 38.0 35.0 40.0 29.0 41.0 33 35.26301877036384 38.0 35.0 40.0 24.0 41.0 34 34.78691013228416 38.0 35.0 40.0 20.0 41.0 35 34.51505805455106 38.0 35.0 40.0 18.0 41.0 36 34.182871007195914 38.0 34.0 40.0 15.0 41.0 37 34.070575308502846 38.0 34.0 40.0 15.0 41.0 38 33.88697178313485 38.0 34.0 40.0 15.0 41.0 39 33.70191150782734 38.0 34.0 40.0 13.0 41.0 40 33.522832359404575 38.0 33.0 40.0 12.0 41.0 41 33.36019509511135 38.0 33.0 40.0 10.0 41.0 42 33.32848468175234 38.0 33.0 40.0 10.0 41.0 43 33.213005346388286 38.0 33.0 40.0 10.0 41.0 44 33.068251800635736 37.0 33.0 40.0 10.0 41.0 45 33.02211972860368 37.0 33.0 40.0 10.0 41.0 46 32.83674788448089 37.0 33.0 40.0 10.0 41.0 47 32.79809512129639 37.0 33.0 40.0 10.0 41.0 48 32.729498606226734 37.0 32.0 40.0 10.0 41.0 49 32.70800201525361 36.0 32.0 40.0 10.0 41.0 50 32.62282108989423 36.0 32.0 40.0 10.0 41.0 51 30.923844626598033 35.0 28.0 38.0 9.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 10.0 9 33.0 10 42.0 11 49.0 12 40.0 13 19.0 14 35.0 15 65.0 16 129.0 17 250.0 18 483.0 19 839.0 20 1313.0 21 2051.0 22 3170.0 23 4682.0 24 7568.0 25 12165.0 26 17534.0 27 19773.0 28 18776.0 29 16547.0 30 16224.0 31 17410.0 32 21533.0 33 29773.0 34 40636.0 35 57868.0 36 70035.0 37 105589.0 38 109109.0 39 29646.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.9452666399292 15.91404015260243 19.883725169788434 27.25696803767994 2 45.38397541920921 21.031226487326773 19.247992204150492 14.33680588931352 3 26.89021176735753 19.90245244432365 38.89141163875253 14.315924149566289 4 24.305847881497783 20.463607768007186 39.689060951478126 15.5414833990169 5 21.648563634615957 23.830208253921956 37.427701119327544 17.093526992134546 6 20.527578811994736 28.814149201687776 38.39621609617533 12.262055890142163 7 62.63958448652465 5.7391638686240265 27.60632285821299 4.014928786638338 8 62.524900646008106 6.3047938508248285 26.576322758776133 4.5939827443909325 9 56.82269414217481 7.083384432828746 28.606326172774853 7.487595252221585 10 29.5052353504652 21.541006102108394 34.63783439786012 14.315924149566289 11 23.661994239291477 21.438088956211324 39.03957255410194 15.860344250395261 12 20.98714281452706 19.307985773900477 42.98804437535424 16.71682703621822 13 19.89681768915376 19.649717102144855 44.65659481801398 15.796870390687406 14 17.371121548298138 22.47488390747069 42.764311449491046 17.38968309474012 15 16.471383730141632 20.489792806737842 46.12494572404947 16.91387773907106 16 18.54845392261824 21.062051912667922 42.66785769923003 17.721636465483808 17 17.781961491420255 20.301857149012758 42.440147299129265 19.476034060437723 18 19.439076695646985 20.137123424340153 42.68923662325695 17.734563256755905 19 19.098339735962004 21.441734974262427 41.265300846207644 18.19462444356793 20 20.117898965525242 21.678726147584182 42.0026251329968 16.20074975389378 21 18.962276971418532 23.09818726611623 41.5810128638146 16.358522898650644 22 18.43062124833029 20.186676124216522 40.95008601288039 20.4326166145728 23 17.45730015677878 22.585093089469968 41.393242934182744 18.56436381956851 24 18.089055648179144 21.01664241512236 41.72304183971442 19.17126009698408 25 17.667277650903713 23.107965223616915 40.40633213898621 18.81842498649316 26 16.898962210680182 22.08061677367177 41.583498785213074 19.43692223043497 27 18.22876443077372 21.390027809174043 41.61084392059636 18.770363839455882 28 15.77880602852512 22.774023115754442 42.30209579746701 19.145075058253425 29 18.083752349195723 22.957815571148725 40.69022436269262 18.268207716962934 30 18.170428141956055 22.291920092542565 42.3004385165347 17.237213248966686 31 19.451506302639384 24.043831766098 38.234631205274134 18.270030725988484 32 19.869306825677246 24.200776270388697 37.81368184846486 18.116235055469193 33 18.07115701411009 24.343965342941143 36.65076781825594 20.934109824692822 34 19.00984093417612 25.753151319692808 36.307047752892785 18.929959993238292 35 18.66297203504155 24.858385344333257 35.672474883907476 20.806167736717722 36 18.695786197501484 28.119582762952476 33.99630094895906 19.188330090586973 37 20.17424651722412 26.2166927964627 34.69385049337254 18.915210192940645 38 19.43509922140942 27.659355848047223 32.60053894775919 20.305005982784166 39 21.917871786117953 24.35689213421324 32.84482215718315 20.880413922485655 40 21.005704360969048 24.087749710804477 34.80074511350717 20.105800814719306 41 18.595686429189357 25.03422285125241 33.86073536869529 22.509355350862947 42 19.619057404896935 24.41423405447151 34.179761948166885 21.786946592464677 43 19.872952843728353 24.14923483339355 34.39984885597897 21.577963466899128 44 19.7058989257505 24.90893241276902 34.08778285642312 21.29738580505736 45 20.479351936864227 23.92798782892883 33.80703946648812 21.785620767718818 46 20.496753386653584 24.716853552713133 34.12971206401082 20.656680996622462 47 18.614082247538107 25.084769919688167 36.15441217902611 20.146735653747612 48 18.36018680870669 24.8782727155211 35.07916831013693 21.682372165635286 49 19.408251270305836 23.092055326666642 36.68441062118204 20.815282781845482 50 18.374439424724642 22.750821182701962 36.59640900367585 22.278330388897544 51 18.28444907009967 22.319265227925847 34.666173901802786 24.730111800171695 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 604.0 1 1372.0 2 2140.0 3 21539.5 4 40939.0 5 26411.0 6 11883.0 7 11226.0 8 10569.0 9 10295.5 10 10022.0 11 9492.0 12 8962.0 13 8523.5 14 8085.0 15 7432.5 16 6780.0 17 6556.0 18 6332.0 19 5986.0 20 5640.0 21 5352.5 22 5065.0 23 4865.0 24 4665.0 25 4977.0 26 5954.5 27 6620.0 28 7032.0 29 7444.0 30 8534.5 31 9625.0 32 10746.5 33 11868.0 34 12794.0 35 13720.0 36 14318.5 37 14917.0 38 16276.0 39 17635.0 40 19621.5 41 21608.0 42 24118.0 43 26628.0 44 28835.0 45 31042.0 46 41275.0 47 51508.0 48 49303.0 49 47098.0 50 45577.0 51 44056.0 52 39694.0 53 35332.0 54 31629.0 55 27926.0 56 25722.5 57 23519.0 58 22025.0 59 20531.0 60 19278.5 61 18026.0 62 16351.0 63 14676.0 64 13001.0 65 11326.0 66 9556.0 67 7786.0 68 6289.0 69 4792.0 70 4233.5 71 3675.0 72 3039.0 73 2403.0 74 1810.0 75 930.5 76 644.0 77 494.5 78 345.0 79 271.5 80 198.0 81 143.5 82 89.0 83 77.5 84 66.0 85 54.0 86 42.0 87 33.0 88 24.0 89 19.0 90 14.0 91 9.5 92 5.0 93 9.0 94 13.0 95 8.5 96 4.0 97 2.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 603398.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.87404263106837 #Duplication Level Percentage of deduplicated Percentage of total 1 76.27840541035202 32.70363605393349 2 8.88758511992234 7.620934066375987 3 3.5288243041795306 4.538848909648301 4 2.141474642730827 3.6725470050317344 5 1.589714763259906 3.407874926562199 6 1.2447337914444714 3.2020061783232983 7 1.047668606266481 3.144245194181077 8 0.847600099138559 2.9072034227651486 9 0.7269783053433144 2.805164896963599 >10 3.5872974947350977 23.799766820178053 >50 0.08384121985491884 2.4246076128867258 >100 0.030416814524557977 2.3440214195940157 >500 0.003119673284570049 0.9073469503663852 >1k 0.0019497958028562808 2.1448966328082473 >5k 0.0 0.0 >10k+ 3.899591605712561E-4 4.376899910381722 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 26179 4.338595752720427 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCG 3334 0.5525374628354751 No Hit GAATCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTC 3318 0.5498858133437632 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGC 2717 0.45028322931133347 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCC 1883 0.31206599955584874 No Hit GCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC 1577 0.2613532030268579 No Hit GAACTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCT 912 0.15114402102758048 No Hit GAATGACTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCT 755 0.12512471039015707 No Hit CTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGCT 700 0.11600966526239728 TruSeq Adapter, Index 15 (95% over 23bp) CGTTTTTTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCG 668 0.1107063662789734 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGC 666 0.11037491009250942 No Hit GAATGATCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTC 611 0.10125986496474963 No Hit CCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC 610 0.10109413687151765 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.6572809323199612E-4 0.0 0.0 0.13606276454346883 0.0 2 1.6572809323199612E-4 0.0 0.0 0.6939035263623677 0.0 3 1.6572809323199612E-4 0.0 0.0 0.9269172254465543 0.0 4 1.6572809323199612E-4 0.0 0.0 1.3917845269623035 0.0 5 1.6572809323199612E-4 0.0 0.0 2.8148916635454544 0.0 6 1.6572809323199612E-4 0.0 0.0 3.4860904411350386 0.0 7 1.6572809323199612E-4 0.0 0.0 4.206676190507758 0.0 8 1.6572809323199612E-4 0.0 0.0 5.217949015409398 0.0 9 1.6572809323199612E-4 0.0 0.0 5.679998939340203 0.0 10 1.6572809323199612E-4 0.0 0.0 7.222264574957159 0.0 11 1.6572809323199612E-4 0.0 0.0 8.648852001498183 0.0 12 1.6572809323199612E-4 0.0 0.0 10.1339414449501 0.0 13 1.6572809323199612E-4 0.0 0.0 10.582401665235881 0.0 14 1.6572809323199612E-4 0.0 0.0 10.782601201860132 0.0 15 1.6572809323199612E-4 0.0 0.0 11.176039695192891 0.0 16 1.6572809323199612E-4 0.0 0.0 11.803486256169228 0.0 17 1.6572809323199612E-4 0.0 0.0 12.51180812664278 0.0 18 3.3145618646399224E-4 0.0 0.0 13.362656157295849 0.0 19 3.3145618646399224E-4 0.0 0.0 13.84857092665206 0.0 20 3.3145618646399224E-4 0.0 0.0 14.339788994991697 0.0 21 3.3145618646399224E-4 0.0 0.0 14.897629756810597 0.0 22 3.3145618646399224E-4 0.0 0.0 15.450332947739303 0.0 23 3.3145618646399224E-4 0.0 0.0 16.00469341960033 0.0 24 3.3145618646399224E-4 0.0 0.0 16.479670134803232 0.0 25 3.3145618646399224E-4 0.0 0.0 16.88321804182314 0.0 26 3.3145618646399224E-4 0.0 0.0 17.274833526130347 0.0 27 3.3145618646399224E-4 0.0 0.0 17.671255125141283 0.0 28 3.3145618646399224E-4 0.0 0.0 18.07364293550857 0.0 29 3.3145618646399224E-4 0.0 0.0 18.495918117063695 0.0 30 3.3145618646399224E-4 0.0 0.0 18.99674841481079 0.0 31 3.3145618646399224E-4 0.0 0.0 19.436259318062042 0.0 32 3.3145618646399224E-4 0.0 0.0 19.880410607923793 0.0 33 4.971842796959884E-4 0.0 0.0 20.32853937202311 0.0 34 4.971842796959884E-4 0.0 0.0 20.772359205698393 0.0 35 4.971842796959884E-4 0.0 0.0 21.2219795226368 0.0 36 4.971842796959884E-4 0.0 0.0 21.67607449809247 0.0 37 4.971842796959884E-4 0.0 0.0 22.106801812402427 0.0 38 4.971842796959884E-4 0.0 0.0 22.549958733704784 0.0 39 4.971842796959884E-4 0.0 0.0 23.032227485009894 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGAT 35 1.2106466E-7 45.0 4 TAACGCC 40 6.8066583E-9 45.0 12 GCCGATA 20 7.03062E-4 45.0 9 GTATGCG 20 7.03062E-4 45.0 1 ACCGTCC 20 7.03062E-4 45.0 27 CCAGTCG 40 6.8066583E-9 45.0 28 CGTTTTT 11780 0.0 43.624786 1 ATTGCGG 55 6.002665E-11 40.909092 2 ATAACGC 45 1.925764E-8 40.0 11 CGGTAGT 45 1.925764E-8 40.0 12 GCGTAAG 45 1.925764E-8 40.0 1 AGCCGTT 125 0.0 39.6 45 CACGACC 105 0.0 38.57143 27 AGGTATA 35 6.2433573E-6 38.571426 6 TAGCCGT 130 0.0 38.07692 44 GTTTTTT 14025 0.0 37.925133 2 AAGTACG 30 1.1392791E-4 37.500004 1 CCGCTTG 30 1.1392791E-4 37.500004 39 TCGATGG 30 1.1392791E-4 37.500004 2 ATCGTTC 30 1.1392791E-4 37.500004 28 >>END_MODULE