##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552196_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 440817 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.562233307699113 31.0 30.0 33.0 28.0 34.0 2 30.462978968596946 31.0 30.0 33.0 25.0 34.0 3 30.143533484416437 31.0 30.0 34.0 25.0 34.0 4 34.47513140373443 35.0 33.0 37.0 32.0 37.0 5 35.15850568376447 35.0 35.0 37.0 33.0 37.0 6 35.09646860261741 35.0 35.0 37.0 33.0 37.0 7 35.61854011982297 37.0 35.0 37.0 35.0 37.0 8 35.16396599949639 37.0 35.0 37.0 32.0 37.0 9 37.215359208016025 39.0 37.0 39.0 33.0 39.0 10 36.772617662204496 39.0 37.0 39.0 32.0 39.0 11 37.01533062472636 39.0 37.0 39.0 33.0 39.0 12 37.2405034288605 39.0 37.0 39.0 34.0 39.0 13 37.20946787442408 39.0 37.0 39.0 34.0 39.0 14 38.341549894854325 40.0 38.0 41.0 34.0 41.0 15 38.5228609604439 40.0 38.0 41.0 34.0 41.0 16 38.27624615203134 40.0 37.0 41.0 34.0 41.0 17 38.04068354895569 40.0 37.0 41.0 33.0 41.0 18 37.77497918637439 39.0 37.0 40.0 34.0 41.0 19 37.11180603288893 38.0 36.0 40.0 33.0 41.0 20 36.818872684129694 38.0 35.0 40.0 32.0 41.0 21 36.97904799497297 38.0 35.0 40.0 33.0 41.0 22 37.287205348251085 39.0 35.0 40.0 33.0 41.0 23 37.33881406570073 39.0 35.0 40.0 33.0 41.0 24 37.26963116213758 39.0 35.0 41.0 33.0 41.0 25 36.756962639825595 38.0 35.0 40.0 33.0 41.0 26 36.92236007232026 38.0 35.0 40.0 33.0 41.0 27 37.13118595698442 39.0 35.0 41.0 33.0 41.0 28 37.031187544944956 39.0 35.0 41.0 33.0 41.0 29 36.947554200495894 39.0 35.0 41.0 33.0 41.0 30 36.53722746627285 38.0 35.0 41.0 32.0 41.0 31 36.399930129736376 39.0 35.0 41.0 31.0 41.0 32 35.94209842179408 39.0 35.0 41.0 29.0 41.0 33 35.36986323122747 39.0 35.0 41.0 23.0 41.0 34 34.906065328696485 39.0 35.0 41.0 18.0 41.0 35 34.60201398766382 39.0 35.0 41.0 16.0 41.0 36 34.33320629649038 39.0 35.0 41.0 15.0 41.0 37 34.01796663921763 39.0 34.0 41.0 12.0 41.0 38 33.94623846176531 39.0 34.0 41.0 12.0 41.0 39 33.912172171218444 39.0 34.0 41.0 12.0 41.0 40 33.792968510742554 39.0 34.0 41.0 10.0 41.0 41 33.699331014910946 39.0 34.0 41.0 10.0 41.0 42 33.54999240047457 38.0 33.0 41.0 10.0 41.0 43 33.57107371085961 39.0 33.0 41.0 10.0 41.0 44 33.518491800452345 38.0 33.0 41.0 10.0 41.0 45 33.520138742380624 38.0 33.0 40.0 10.0 41.0 46 33.40688085985794 38.0 33.0 40.0 10.0 41.0 47 33.402087487551526 38.0 33.0 40.0 10.0 41.0 48 33.40693984124932 38.0 33.0 40.0 10.0 41.0 49 33.37382859553965 38.0 33.0 40.0 10.0 41.0 50 33.2789933237602 38.0 33.0 40.0 10.0 41.0 51 32.084057556763916 36.0 31.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 10.0 10 15.0 11 12.0 12 17.0 13 16.0 14 18.0 15 24.0 16 64.0 17 114.0 18 227.0 19 397.0 20 756.0 21 1181.0 22 1786.0 23 2754.0 24 4465.0 25 7382.0 26 12022.0 27 15077.0 28 14548.0 29 12193.0 30 10634.0 31 10498.0 32 11785.0 33 15565.0 34 24338.0 35 30600.0 36 36271.0 37 54457.0 38 99252.0 39 74337.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.741926922056095 15.179995326858991 17.931023531306643 28.147054219778276 2 42.61768488964808 25.81071056696997 18.830489749714737 12.741114793667213 3 25.968145511629544 23.326913435734102 38.64438077478864 12.060560277847724 4 23.138626686357377 20.025089776483213 42.87130487254348 13.964978664615929 5 23.11027024819823 23.377047618399473 37.730396060043056 15.78228607335924 6 18.51766152394304 32.53776510434035 38.1137751039547 10.830798267761905 7 59.11523375913361 6.347305117543107 30.649680025951813 3.8877810973714717 8 58.04109188166519 9.734424942776707 27.537957928119834 4.686525247438279 9 51.86392539307695 9.265976584387625 28.973701104993683 9.896396917541745 10 28.788136573680234 22.10236901026957 35.70665378150117 13.40284063454903 11 23.26362186576289 21.692902043251507 40.28519771242942 14.75827837855618 12 20.661635100279707 20.50034368003049 43.16825349294605 15.66976772674375 13 18.167402799801277 22.89793723926255 45.58467572711579 13.349984233820383 14 15.588101184845412 25.697511665838658 42.26493079894832 16.449456350367615 15 15.427717170617287 22.27250763922444 47.83753802598357 14.462237164174702 16 16.012994054222045 23.218251564708257 42.768767992160015 17.999986388909683 17 15.844897088814633 23.509075194468455 43.28825793923556 17.35776977748136 18 15.746897238536626 22.929015895484977 44.70721410471919 16.61687276125921 19 17.11095533974416 23.70825081609829 42.12836619277387 17.05242765138368 20 17.05877949353133 24.20596301866761 44.90820453839122 13.827052949409847 21 15.932688621355348 27.02504667469721 42.61292100803735 14.429343695910093 22 15.761188883368835 23.042668499626828 41.901060984490165 19.295081632514172 23 16.217387260473167 25.086600562138027 42.97452230744277 15.721489869946032 24 16.19969284306186 23.561477892186552 42.577078470204185 17.661750794547398 25 14.256709700397217 28.482567596077285 41.01248363833518 16.24823906519032 26 14.740130258134329 25.00629512927133 42.30599092140276 17.947583691191582 27 17.29606616804706 25.21681332616483 40.5719380150947 16.915182490693418 28 13.433692439266181 25.31345206741119 43.58452600512231 17.668329488200317 29 16.928793581009806 25.497201786682457 40.114832231969274 17.459172400338463 30 17.082145198574462 26.74261655063212 40.616400910128235 15.558837340665175 31 18.29806926683862 25.08387834407475 38.64392707177808 17.97412531730854 32 19.175304037729944 27.472397843095887 37.323424459583 16.028873659591167 33 16.256632570885422 27.015065208465188 36.73020777329368 19.998094447355705 34 16.199465991556586 28.17677176696906 37.90030783749266 17.723454403981698 35 19.02648945027075 28.2085309777073 34.18924406272898 18.575735509292972 36 17.284950444288675 29.778116542692317 33.51912471615206 19.417808296866955 37 19.51149796854477 28.25775775435158 35.138844463802435 17.09189981330121 38 16.659747695755836 31.06685994414916 32.54366324347745 19.729729116617552 39 19.43255364470971 27.15480573571346 35.95505617977528 17.45758443980155 40 17.36548272866065 30.678717018626777 35.658334410877984 16.297465841834594 41 15.848073009888457 29.133177713200713 34.38410950575862 20.6346397711522 42 17.09462203136449 28.534970293795386 35.715727841712095 18.654679833128032 43 19.033068143923668 26.15371004294299 33.94492499154978 20.86829682158356 44 17.910380044326786 27.086523432626237 34.681738680677014 20.321357842369963 45 17.400871563483257 26.87033394810091 34.94239106023588 20.78640342817995 46 19.073674563367565 28.84212723193525 34.20376255906646 17.880435645630726 47 16.350549094068516 25.961793669481892 39.87550389390609 17.812153342543503 48 17.245024579360596 27.477842279222443 35.93917657440616 19.3379565670108 49 17.382496591556134 25.450470376596186 38.43545053843205 18.731582493415637 50 17.017038816561065 25.305739116231905 37.209998706946415 20.467223360260604 51 17.583940728238705 24.476823715963768 34.8466597250106 23.092575830786924 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 535.0 1 1385.0 2 2235.0 3 16505.5 4 30776.0 5 20260.5 6 9745.0 7 9103.0 8 8461.0 9 8057.5 10 7654.0 11 7457.5 12 7261.0 13 6963.0 14 6665.0 15 6194.0 16 5723.0 17 5156.5 18 4590.0 19 4295.0 20 4000.0 21 3950.5 22 3901.0 23 3991.5 24 4082.0 25 4487.0 26 5525.5 27 6159.0 28 7479.5 29 8800.0 30 9202.5 31 9605.0 32 10908.5 33 12212.0 34 12965.0 35 13718.0 36 14338.0 37 14958.0 38 16085.5 39 17213.0 40 19120.5 41 21028.0 42 22887.0 43 24746.0 44 26091.0 45 27436.0 46 40119.5 47 52803.0 48 43228.0 49 33653.0 50 32185.0 51 30717.0 52 25798.5 53 20880.0 54 17634.0 55 14388.0 56 11929.0 57 9470.0 58 8061.0 59 6652.0 60 5677.0 61 4702.0 62 4003.0 63 3304.0 64 2882.0 65 2460.0 66 2083.5 67 1707.0 68 1454.5 69 1202.0 70 1074.0 71 946.0 72 797.5 73 649.0 74 508.5 75 314.0 76 260.0 77 195.5 78 131.0 79 96.0 80 61.0 81 48.0 82 35.0 83 26.5 84 18.0 85 11.5 86 5.0 87 7.5 88 10.0 89 5.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 440817.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.10932884207761 #Duplication Level Percentage of deduplicated Percentage of total 1 78.84341936903388 31.62356634506411 2 8.870838207501693 7.116067335391032 3 3.3065871218223615 3.97874970642456 4 1.8128846396079097 2.9085434465114 5 1.1068108083578316 2.2196719339195004 6 0.7861781627615354 1.8919847075197698 7 0.6040674238319125 1.6960117261682592 8 0.4612139492501101 1.4799185565620767 9 0.3804708680693324 1.373438804600122 >10 3.672921240351492 28.55507724332222 >50 0.10249951661018665 2.7257857628214843 >100 0.041228855843203564 3.189040724366052 >500 0.0051536069804004455 1.3295899714335668 >1k 0.0040083609847559026 3.0096643609717497 >5k 0.0011452459956445436 2.6619360457617964 >10k+ 5.726229978222718E-4 4.240953329162344 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18465 4.18881304486896 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCG 6242 1.416007095915085 No Hit GAATCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTC 5348 1.213201850200877 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGC 4478 1.015841040613225 No Hit GCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC 2011 0.4561983771043313 TruSeq Adapter, Index 23 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCC 1679 0.38088367735364104 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCT 1451 0.32916153415135985 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCGATACTCGTA 1241 0.2815227180439956 No Hit GAACTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCT 1165 0.2642820036432352 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTC 1079 0.24477277418974314 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 844 0.19146267045054977 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 777 0.17626361959724784 No Hit CTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGCT 692 0.15698124164902896 TruSeq Adapter, Index 20 (95% over 22bp) GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 645 0.1463192209011903 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGC 627 0.14223589380627336 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 586 0.13293498209007365 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 564 0.12794424897406406 No Hit CCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC 550 0.12476832790023978 TruSeq Adapter, Index 23 (95% over 21bp) AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 504 0.11433315865767427 No Hit GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT 462 0.1048053954362014 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCGATACT 450 0.10208317737292345 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.16424048981777017 0.0 2 0.0 0.0 0.0 0.9099013876506578 0.0 3 0.0 0.0 0.0 1.1344843778710894 0.0 4 0.0 0.0 0.0 1.6809696540741397 0.0 5 0.0 0.0 0.0 3.619869469643866 0.0 6 0.0 0.0 0.0 4.191081559921691 0.0 7 0.0 0.0 0.0 5.007520127399806 0.0 8 0.0 0.0 0.0 5.957120528473267 0.0 9 0.0 0.0 0.0 6.276300596392607 0.0 10 0.0 0.0 0.0 8.485607406247944 0.0 11 0.0 0.0 0.0 9.742364745461268 0.0 12 0.0 0.0 0.0 11.74115335842311 0.0 13 0.0 0.0 0.0 12.188277675316515 0.0 14 0.0 0.0 0.0 12.404694011347113 0.0 15 0.0 0.0 0.0 12.965244080877099 0.0 16 0.0 0.0 0.0 13.555965400608416 0.0 17 0.0 0.0 0.0 14.214288468911136 0.0 18 0.0 0.0 0.0 14.925467937942502 0.0 19 0.0 0.0 0.0 15.443143072975861 0.0 20 0.0 0.0 0.0 15.865767427299764 0.0 21 0.0 0.0 0.0 16.3371648552574 0.0 22 0.0 0.0 0.0 16.82217337353142 0.0 23 0.0 0.0 0.0 17.32646426975366 0.0 24 0.0 0.0 0.0 17.723000700971152 0.0 25 0.0 0.0 0.0 18.081879782313294 0.0 26 0.0 0.0 0.0 18.428962585381235 0.0 27 0.0 0.0 0.0 18.794647211881575 0.0 28 0.0 0.0 0.0 19.164188313971557 0.0 29 0.0 0.0 0.0 19.53645163412482 0.0 30 0.0 0.0 0.0 19.96089080049091 0.0 31 0.0 0.0 0.0 20.337918002254902 0.0 32 0.0 0.0 0.0 20.73286647293548 0.0 33 0.0 0.0 0.0 21.1257732800686 0.0 34 0.0 0.0 0.0 21.508471769464425 0.0 35 0.0 0.0 0.0 21.88164249563878 0.0 36 0.0 0.0 0.0 22.2990492653414 0.0 37 0.0 0.0 0.0 22.695358845053615 0.0 38 0.0 0.0 0.0 23.09371008831329 0.0 39 0.0 0.0 0.0 23.485255786414772 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGCGCGC 30 2.1624455E-6 45.000004 15 TTGTGCG 20 7.0285506E-4 45.0 1 GTCGAAG 20 7.0285506E-4 45.0 1 CGACGGT 25 3.886879E-5 45.0 28 GCGAAAG 20 7.0285506E-4 45.0 1 CGACAGG 55 1.8189894E-12 45.0 2 GCCGATT 20 7.0285506E-4 45.0 9 GTTAACG 20 7.0285506E-4 45.0 1 GACGGTC 25 3.886879E-5 45.0 29 AACGAAG 20 7.0285506E-4 45.0 1 TTACGCG 20 7.0285506E-4 45.0 1 GCTCGAG 20 7.0285506E-4 45.0 1 TCGACGG 20 7.0285506E-4 45.0 2 GCGTACG 20 7.0285506E-4 45.0 1 ACGACCA 50 2.1827873E-11 45.0 28 GCTCACG 25 3.886879E-5 45.0 44 AACACGT 35 1.2096461E-7 45.0 41 CGTTTTT 7840 0.0 43.478954 1 CGAATAT 100 0.0 42.75 14 GCTACGA 100 0.0 42.75 10 >>END_MODULE