##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552190_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 410029 Sequences flagged as poor quality 0 Sequence length 51 %GC 33 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.840642978911248 31.0 30.0 33.0 28.0 34.0 2 30.79952149725995 31.0 30.0 33.0 26.0 34.0 3 30.58298559370191 31.0 30.0 34.0 25.0 34.0 4 34.58193444853901 35.0 35.0 37.0 32.0 37.0 5 35.265654380543815 35.0 35.0 37.0 33.0 37.0 6 35.22399635147758 36.0 35.0 37.0 33.0 37.0 7 35.67613754149097 37.0 35.0 37.0 35.0 37.0 8 35.10537303459024 37.0 35.0 37.0 32.0 37.0 9 37.17617290484331 39.0 37.0 39.0 33.0 39.0 10 36.951108336239635 39.0 37.0 39.0 33.0 39.0 11 37.195700791895206 39.0 37.0 39.0 34.0 39.0 12 37.38759209714435 39.0 37.0 39.0 34.0 39.0 13 37.22968375407593 39.0 37.0 39.0 34.0 39.0 14 38.483856019940056 40.0 38.0 41.0 34.0 41.0 15 38.48938489716581 40.0 38.0 41.0 33.0 41.0 16 38.45704816000819 40.0 38.0 41.0 34.0 41.0 17 38.075906826102546 40.0 37.0 41.0 33.0 41.0 18 37.654521997224585 39.0 37.0 40.0 33.0 41.0 19 36.890793090244834 37.0 37.0 40.0 33.0 41.0 20 36.16508832302105 36.0 35.0 40.0 32.0 41.0 21 36.418282609278855 36.0 35.0 40.0 33.0 41.0 22 36.6826346429155 37.0 35.0 40.0 33.0 41.0 23 36.73196286116348 37.0 35.0 40.0 33.0 41.0 24 36.5842318470157 37.0 35.0 40.0 33.0 41.0 25 36.19432284057957 36.0 35.0 40.0 33.0 41.0 26 36.30820015169659 37.0 35.0 40.0 33.0 41.0 27 36.52217769962613 37.0 35.0 40.0 33.0 41.0 28 36.333898334020276 37.0 35.0 40.0 33.0 41.0 29 36.2376636774472 37.0 35.0 40.0 33.0 41.0 30 35.76388743235235 36.0 35.0 40.0 31.0 41.0 31 35.43567406207853 37.0 35.0 40.0 30.0 41.0 32 34.71843942745513 37.0 35.0 40.0 22.0 41.0 33 33.64462025856708 36.0 33.0 40.0 16.0 41.0 34 32.86252435803321 37.0 33.0 40.0 10.0 41.0 35 32.356350404483585 37.0 32.0 40.0 9.0 41.0 36 31.911457482275644 37.0 30.0 40.0 8.0 41.0 37 31.5130320050533 36.0 28.0 40.0 7.0 41.0 38 31.298200858963636 36.0 26.0 40.0 7.0 41.0 39 31.189350021583838 36.0 25.0 40.0 7.0 41.0 40 30.987064329596198 35.0 24.0 40.0 7.0 41.0 41 30.830514427028334 35.0 23.0 40.0 7.0 41.0 42 30.616183245575314 35.0 23.0 40.0 7.0 41.0 43 30.576590924056593 35.0 23.0 40.0 7.0 41.0 44 30.54857583244112 35.0 23.0 40.0 7.0 41.0 45 30.55618505032571 35.0 23.0 40.0 7.0 41.0 46 30.349509424943115 35.0 23.0 40.0 7.0 41.0 47 30.244692448582907 35.0 23.0 40.0 7.0 41.0 48 30.253996668528323 35.0 23.0 40.0 7.0 41.0 49 30.224491438410453 35.0 23.0 40.0 7.0 41.0 50 30.174109636147687 35.0 23.0 40.0 7.0 41.0 51 28.764633721029487 34.0 20.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 9.0 10 13.0 11 11.0 12 9.0 13 7.0 14 18.0 15 25.0 16 47.0 17 160.0 18 289.0 19 567.0 20 897.0 21 1400.0 22 2102.0 23 3272.0 24 5639.0 25 10201.0 26 17306.0 27 21531.0 28 20703.0 29 17444.0 30 14775.0 31 13665.0 32 13637.0 33 16180.0 34 22897.0 35 30483.0 36 33615.0 37 40950.0 38 70271.0 39 51902.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.840147891978376 10.668513690495063 13.891212572769243 39.60012584475732 2 49.558201980835506 26.302773706250044 14.373373590648466 9.765650722265987 3 19.38594587212124 23.407124861900012 47.96855832148458 9.23837094449417 4 17.776791397681627 14.410200254128366 56.98987144811708 10.823136900072921 5 22.573037516858562 17.98872762658251 46.83156557219124 12.606669284367692 6 14.450929080626004 29.101356245533854 47.94953527677311 8.498179397067036 7 44.82439046994237 5.4098612537162 46.466469444844144 3.299278831497284 8 43.208163325033105 12.075975113955355 40.54713203212456 4.168729528886981 9 38.96187830616859 7.076328747478837 40.93198285974894 13.02981008660363 10 24.530216155442663 16.526879806062496 46.93131461433216 12.01158942416268 11 20.717802887112864 16.458591953252085 50.403020274175724 12.420584885459322 12 17.92190308490375 14.956503076611655 52.813581478383234 14.308012360101358 13 15.000890180938423 17.092205673257258 57.108887420158084 10.798016725646235 14 13.451975348085135 21.15045521170454 50.43155484124293 14.966014598967389 15 11.784532313568064 17.257803716322503 59.21239717190735 11.745266798202078 16 12.704955015376962 18.569418260659614 50.975906582217355 17.749720141746074 17 12.760073068002505 18.44698789597809 54.49175546119909 14.301183574820318 18 12.08890102895161 19.22473776245095 54.04227505859341 14.644086150004023 19 13.373444317353163 19.755188047674675 52.061195671525674 14.81017196344649 20 13.158581466188975 19.807867248414137 56.36625702084487 10.66729426455202 21 13.079318779891178 23.433464462269743 52.17923610281224 11.307980655026839 22 11.380902326420813 18.417965558533663 52.85748081233279 17.343651302712733 23 12.706906096885831 22.270619882983887 52.76041450726656 12.262059512863724 24 13.80951103458536 18.461133236917387 50.344243943721054 17.3851117847762 25 11.108238685556387 25.236507661653203 50.24498267195735 13.410270980833063 26 11.534793880432847 18.875006401986198 53.54718812571794 16.043011591863017 27 14.687741598764967 20.54781491065266 50.07987239926932 14.684571091313053 28 10.385119101331856 20.206131761411996 55.17365844854876 14.235090688707382 29 15.733521287518688 17.735330915618164 51.96242217013919 14.568725626723964 30 14.236310114650427 22.241353660350853 51.31539476476055 12.206941460238179 31 15.832050903716565 20.556350892253963 47.90514817244634 15.706450031583133 32 18.773794048713626 22.30671489089796 46.767179882398565 12.15231117798985 33 13.478558833643476 21.804311402364224 46.110153184286965 18.606976579705336 34 16.086423155435348 22.739854985866852 45.52751146870099 15.646210389996806 35 20.23539798404503 22.197454326401303 41.210011974762764 16.357135714790903 36 15.168683190701145 28.948196347087645 41.90996246606947 13.973157996141735 37 20.530742947450058 25.245775298820327 40.739801331125356 13.483680422604255 38 15.83327032965961 28.112645690914544 40.46372329762041 15.590360681805434 39 19.50179133671033 23.590526523733686 39.576225096273674 17.331457043282306 40 18.927441717537054 23.505654478097888 42.72307568489058 14.843828119474475 41 15.384277697431155 29.130622468166884 37.22541576327528 18.259684071126674 42 17.959217518760866 25.107736282067854 41.96629994463807 14.966746254533216 43 17.84264039860595 25.966456031158774 38.86773862336567 17.323164946869614 44 17.37974631062681 24.147804179704362 40.77540856866222 17.697040941006613 45 16.130810259762114 23.23884408176007 40.72150994197971 19.908835716498103 46 18.99451014440442 26.25448443890554 39.4947674432784 15.256237973411638 47 14.818951830236399 22.433779074163045 47.37811227986313 15.369156815737423 48 16.76174124269259 24.765077592072757 40.94368934880216 17.529491816432497 49 15.265017840201548 21.895280577715234 45.555070495013766 17.284631087069453 50 16.05081591789849 21.717732160408165 42.774779344875604 19.456672576817738 51 16.60711803311473 20.60805455223899 40.938323874652774 21.846503539993513 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 491.0 1 1238.5 2 1986.0 3 26288.5 4 50591.0 5 32482.5 6 14374.0 7 13395.0 8 12416.0 9 11873.0 10 11330.0 11 10980.5 12 10631.0 13 9979.5 14 9328.0 15 8549.0 16 7770.0 17 7045.5 18 6321.0 19 5764.5 20 5208.0 21 4894.5 22 4581.0 23 4351.0 24 4121.0 25 4535.0 26 5248.0 27 5547.0 28 6364.5 29 7182.0 30 7689.0 31 8196.0 32 8734.0 33 9272.0 34 9688.0 35 10104.0 36 10322.5 37 10541.0 38 10977.5 39 11414.0 40 12549.5 41 13685.0 42 14678.5 43 15672.0 44 17713.0 45 19754.0 46 37224.0 47 54694.0 48 40106.0 49 25518.0 50 24309.5 51 23101.0 52 19303.0 53 15505.0 54 13171.5 55 10838.0 56 9007.0 57 7176.0 58 6247.0 59 5318.0 60 4667.0 61 4016.0 62 3479.5 63 2943.0 64 2453.5 65 1964.0 66 1594.5 67 1225.0 68 1046.5 69 868.0 70 713.0 71 558.0 72 463.0 73 368.0 74 292.0 75 168.5 76 121.0 77 95.0 78 69.0 79 47.0 80 25.0 81 21.0 82 17.0 83 13.0 84 9.0 85 8.0 86 7.0 87 5.0 88 3.0 89 2.5 90 2.0 91 1.5 92 1.0 93 1.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 410029.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.42198114746456 #Duplication Level Percentage of deduplicated Percentage of total 1 80.7393625226788 34.25123714795386 2 8.318508164254276 7.057751930380498 3 3.2065674175547296 4.0808682760674255 4 1.7563125816750382 2.980250369154931 5 1.113980000391687 2.3628619287634356 6 0.7791246324319692 1.9831206281132547 7 0.5938046748444582 1.7633259505069547 8 0.4823744958151281 1.6370625413989668 9 0.40082115116304945 1.530326458632953 >10 2.4548723354173214 17.9084101878199 >50 0.09685499236912344 2.8350586556213373 >100 0.04813751117746854 4.142487423821613 >500 0.0034798200851182074 0.9533847340564681 >1k 0.0034798200851182074 2.479538412857054 >5k 0.001159940028372736 3.722752106066688 >10k+ 0.001159940028372736 10.31156324878468 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 31486 7.678969048530713 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCG 10425 2.5425030912447655 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGC 8637 2.10643637401257 No Hit GAATCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTC 6494 1.5837904148243174 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCT 2237 0.545571166917462 No Hit GCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTGC 2120 0.5170365998502545 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGAGTCGATCGTA 1621 0.3953378907345578 No Hit GAACTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCT 1498 0.3653400125356987 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCC 1316 0.3209529082089316 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTC 1286 0.31363635255067324 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGAGTCGAT 941 0.22949596248070261 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 754 0.1838894322108924 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 589 0.14364837609047165 No Hit CTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTGCT 560 0.13657570562082194 Illumina Single End Adapter 2 (95% over 21bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGC 530 0.12925914996256363 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 501 0.12218647949291392 No Hit CCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTGC 495 0.12072316836126225 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 494 0.12047928317265365 No Hit GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 475 0.11584546458909004 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 475 0.11584546458909004 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATG 463 0.11291884232578671 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 437 0.10657782742196284 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 427 0.10413897553587673 No Hit GAATCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTT 420 0.10243177921561646 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGAGTCGATCGT 416 0.10145623846118201 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTAT 412 0.10048069770674757 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.438851886086106E-4 0.0 0.0 0.15730594665255385 0.0 2 2.438851886086106E-4 0.0 0.0 0.9955393399003485 0.0 3 2.438851886086106E-4 0.0 0.0 1.166746742303593 0.0 4 2.438851886086106E-4 0.0 0.0 1.7752402878820766 0.0 5 2.438851886086106E-4 0.0 0.0 4.237749037263218 0.0 6 2.438851886086106E-4 0.0 0.0 4.646256728182641 0.0 7 2.438851886086106E-4 0.0 0.0 5.5700938226320575 0.0 8 2.438851886086106E-4 0.0 0.0 6.374914945040473 0.0 9 2.438851886086106E-4 0.0 0.0 6.597094351862917 0.0 10 2.438851886086106E-4 0.0 0.0 10.009779796063205 0.0 11 2.438851886086106E-4 0.0 0.0 11.049706240290321 0.0 12 2.438851886086106E-4 0.0 0.0 14.108514275819514 0.0 13 2.438851886086106E-4 0.0 0.0 14.519948589002242 0.0 14 2.438851886086106E-4 0.0 0.0 14.743591306956338 0.0 15 2.438851886086106E-4 0.0 0.0 15.372571208377945 0.0 16 2.438851886086106E-4 0.0 0.0 15.868633682007857 0.0 17 2.438851886086106E-4 0.0 0.0 16.339088210833868 0.0 18 2.438851886086106E-4 0.0 0.0 16.830760751068826 0.0 19 2.438851886086106E-4 0.0 0.0 17.399257125715497 0.0 20 2.438851886086106E-4 0.0 0.0 17.776547512493018 0.0 21 2.438851886086106E-4 0.0 0.0 18.179201958885834 0.0 22 2.438851886086106E-4 0.0 0.0 18.62087803545603 0.0 23 2.438851886086106E-4 0.0 0.0 18.989876325820855 0.0 24 2.438851886086106E-4 0.0 0.0 19.306439300634832 0.0 25 2.438851886086106E-4 0.0 0.0 19.59129720092969 0.0 26 2.438851886086106E-4 0.0 0.0 19.860790334342205 0.0 27 2.438851886086106E-4 0.0 0.0 20.15540364218141 0.0 28 2.438851886086106E-4 0.0 0.0 20.447090327757305 0.0 29 2.438851886086106E-4 0.0 0.0 20.752678469083893 0.0 30 2.438851886086106E-4 0.0 0.0 21.068509788332044 0.0 31 2.438851886086106E-4 0.0 0.0 21.387999385409326 0.0 32 2.438851886086106E-4 0.0 0.0 21.71358611220182 0.0 33 2.438851886086106E-4 0.0 0.0 22.02771023512971 0.0 34 2.438851886086106E-4 0.0 0.0 22.353540847110814 0.0 35 2.438851886086106E-4 0.0 0.0 22.667908855227314 0.0 36 2.438851886086106E-4 0.0 0.0 22.971058144667815 0.0 37 2.438851886086106E-4 0.0 0.0 23.278841252691883 0.0 38 2.438851886086106E-4 0.0 0.0 23.605403520238813 0.0 39 2.438851886086106E-4 0.0 0.0 23.980742825507463 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGGGT 20 7.0279714E-4 45.000004 4 CCGTCTC 40 6.7957444E-9 45.000004 19 ATCGTCG 20 7.0279714E-4 45.000004 2 GCGATAT 20 7.0279714E-4 45.000004 9 CGTGTAC 20 7.0279714E-4 45.000004 18 GCTACGA 45 3.8380676E-10 45.000004 10 GGTCTCG 20 7.0279714E-4 45.000004 9 CACCGAG 40 6.7957444E-9 45.000004 16 GTTACGG 25 3.886402E-5 45.0 2 GCGGGCC 25 3.886402E-5 45.0 5 GACTATG 35 1.2093733E-7 45.0 24 GTATGCG 30 2.1620726E-6 44.999996 1 CGTTTTT 12515 0.0 44.01119 1 TACGGCT 875 0.0 43.2 7 TGATACC 1315 0.0 43.11787 4 ACGGCTG 895 0.0 42.23464 8 GATACCT 1340 0.0 41.97761 5 GAATGAT 3250 0.0 41.746155 1 ATGATAC 3155 0.0 41.576862 3 TGCGGGT 65 0.0 41.53846 4 >>END_MODULE