SRR3552189_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552189_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	443763
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17983	4.052388324398383	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCG	8589	1.9354925940197807	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTC	7496	1.6891899504915913	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGC	7060	1.5909393076935212	No Hit
GCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC	1892	0.42635370682098334	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCAGCTTT	1839	0.4144103947377316	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTA	1637	0.3688906015147725	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCT	1602	0.36100350862960634	No Hit
GAACTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCT	1596	0.35965143556357787	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTC	1251	0.28190723426693975	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCC	711	0.16022065832437585	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTT	625	0.14084094437796751	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	551	0.12416537656361616	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGT	519	0.11695432021146422	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	456	0.1027575530181651	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATG	455	0.10253220750716036	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACAC	45	3.8380676E-10	45.000004	34
TCCGGCT	35	1.2096825E-7	45.0	7
TCACGAT	25	3.886922E-5	45.0	7
CCTTCGA	20	7.0286E-4	45.0	41
AGTCCGG	20	7.0286E-4	45.0	2
CGAACCC	40	6.7993824E-9	45.0	34
ACGCCGG	20	7.0286E-4	45.0	27
CCCTCGA	40	6.7993824E-9	45.0	41
TCCGAAG	20	7.0286E-4	45.0	14
ACCGCGA	20	7.0286E-4	45.0	30
CACGATC	25	3.886922E-5	45.0	8
ACGATAT	25	3.886922E-5	45.0	32
TACGCAG	20	7.0286E-4	45.0	1
ACGGCTA	25	3.886922E-5	45.0	30
GCGGCTA	25	3.886922E-5	45.0	24
CGGCTAT	25	3.886922E-5	45.0	31
CCGTTAG	20	7.0286E-4	45.0	1
CACCCGC	25	3.886922E-5	45.0	38
TACCGCG	35	1.2096825E-7	45.0	29
AAATGCG	20	7.0286E-4	45.0	1