SRR3552185_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552185_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	399019
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17465	4.376984554620206	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCG	8779	2.200145857716049	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGC	8064	2.0209563955601113	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTC	7757	1.9440177034176318	No Hit
GCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGC	2484	0.6225267468466413	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGGATCAT	2427	0.6082417128006435	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCT	1793	0.4493520358679661	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAGGATCATCGTA	1768	0.44308667005831803	No Hit
GAACTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCT	1333	0.33406930497044	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTC	1318	0.33031008548465113	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCC	847	0.21227059363087974	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATG	536	0.1343294429588566	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGAGGATCA	483	0.1210468674424025	No Hit
CCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGC	450	0.11277658457366693	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	429	0.10751367729356245	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGAGGATCATCGT	427	0.1070124480287906	No Hit
GAATGATCCGGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGC	417	0.10450630170493135	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTT	416	0.10425568707254543	No Hit
CTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGCT	409	0.10250138464584393	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTAT	401	0.10049646758675651	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCCCG	20	7.027743E-4	45.000004	36
CGCGCAA	20	7.027743E-4	45.000004	18
CACGACC	20	7.027743E-4	45.000004	27
TCGGCTA	20	7.027743E-4	45.000004	1
CTGCGAG	20	7.027743E-4	45.000004	1
CCGTATG	20	7.027743E-4	45.000004	30
TTGCGCA	20	7.027743E-4	45.000004	32
CTACCGT	20	7.027743E-4	45.000004	27
ACCGTAT	20	7.027743E-4	45.000004	29
CGCAATC	20	7.027743E-4	45.000004	20
TAAGACG	20	7.027743E-4	45.000004	1
CGATAGA	20	7.027743E-4	45.000004	10
CCCATCG	55	1.8189894E-12	45.000004	40
TCGAACG	20	7.027743E-4	45.000004	1
TACCGTA	20	7.027743E-4	45.000004	28
CCATTAC	20	7.027743E-4	45.000004	6
CTAGATG	25	3.8862127E-5	45.0	1
AACCGCA	25	3.8862127E-5	45.0	21
CGGCGAT	70	0.0	45.0	31
CGGCGAA	75	0.0	45.0	31

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content