##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552185_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 399019 Sequences flagged as poor quality 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.949090143577124 30.0 28.0 33.0 25.0 33.0 2 28.634626421298233 31.0 28.0 33.0 16.0 34.0 3 28.36186998614101 31.0 26.0 33.0 16.0 34.0 4 33.43123761023911 35.0 32.0 35.0 28.0 37.0 5 34.376678804768694 35.0 35.0 35.0 32.0 37.0 6 33.49791112703906 35.0 33.0 37.0 28.0 37.0 7 34.63077948669111 35.0 35.0 37.0 32.0 37.0 8 33.806685897162794 35.0 35.0 37.0 28.0 37.0 9 36.15242883170977 39.0 35.0 39.0 31.0 39.0 10 36.010696232510234 37.0 35.0 39.0 32.0 39.0 11 36.580170367827094 38.0 35.0 39.0 32.0 39.0 12 36.60501880862816 39.0 35.0 39.0 32.0 39.0 13 36.56018635704064 39.0 35.0 39.0 32.0 39.0 14 37.34603364752054 39.0 36.0 40.0 32.0 41.0 15 37.64218495861099 39.0 36.0 41.0 32.0 41.0 16 37.27186424706593 39.0 36.0 41.0 32.0 41.0 17 37.06669607211687 39.0 36.0 40.0 32.0 41.0 18 36.835293557449646 39.0 36.0 39.0 32.0 41.0 19 36.14286537733792 37.0 35.0 40.0 30.0 41.0 20 35.87262511308985 37.0 35.0 39.0 31.0 41.0 21 36.297740207859775 37.0 35.0 40.0 32.0 41.0 22 36.705066676022945 38.0 35.0 40.0 32.0 41.0 23 36.88492778539368 38.0 35.0 40.0 33.0 41.0 24 36.81680320987221 38.0 35.0 40.0 33.0 41.0 25 36.14311348582398 37.0 35.0 40.0 31.0 41.0 26 36.388427618734944 38.0 35.0 40.0 32.0 41.0 27 36.536220079745576 38.0 35.0 40.0 32.0 41.0 28 36.38668334089354 38.0 35.0 40.0 31.0 41.0 29 36.33825958162393 38.0 35.0 40.0 31.0 41.0 30 35.76559261589047 38.0 35.0 40.0 30.0 41.0 31 35.75045298594804 38.0 35.0 40.0 30.0 41.0 32 35.18220185003722 38.0 35.0 40.0 25.0 41.0 33 34.61448452329338 38.0 34.0 40.0 21.0 41.0 34 34.202827434282575 38.0 34.0 40.0 16.0 41.0 35 33.79774396707926 38.0 34.0 40.0 14.0 41.0 36 33.61502083860668 38.0 33.0 40.0 12.0 41.0 37 33.481711397201636 38.0 33.0 40.0 10.0 41.0 38 33.30034660003659 38.0 33.0 40.0 10.0 41.0 39 33.2285856061992 38.0 33.0 40.0 10.0 41.0 40 33.04675466581792 38.0 33.0 40.0 10.0 41.0 41 32.90924241702776 38.0 32.0 40.0 10.0 41.0 42 33.073397507386865 38.0 33.0 40.0 10.0 41.0 43 33.03772502061305 38.0 33.0 40.0 10.0 41.0 44 33.10262669196204 38.0 33.0 40.0 10.0 41.0 45 33.13802600878655 38.0 33.0 40.0 10.0 41.0 46 32.94618551998777 38.0 33.0 40.0 10.0 41.0 47 32.7572872469732 37.0 32.0 40.0 10.0 41.0 48 32.814720602277085 37.0 32.0 40.0 10.0 41.0 49 32.83671203626895 37.0 32.0 40.0 10.0 41.0 50 32.795032316756846 37.0 32.0 40.0 10.0 41.0 51 31.953027299451907 36.0 30.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 12.0 10 11.0 11 13.0 12 22.0 13 8.0 14 18.0 15 23.0 16 67.0 17 110.0 18 314.0 19 679.0 20 1255.0 21 1903.0 22 2511.0 23 3481.0 24 5229.0 25 8380.0 26 12180.0 27 14396.0 28 13308.0 29 11375.0 30 10883.0 31 11950.0 32 14253.0 33 19747.0 34 25508.0 35 32740.0 36 42555.0 37 63898.0 38 78323.0 39 23863.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.70453036070964 13.639701367604049 16.40999551399808 28.245772757688233 2 42.98291560051025 27.54630731869911 17.017735997533954 12.453041083256688 3 23.452517298674998 26.87215395758097 37.637806720983214 12.037522022760822 4 21.673153408734922 17.891378606031292 47.419295823005925 13.016172162227862 5 26.877918094125842 21.492209644152283 36.44112185134041 15.188750410381461 6 17.612444520185754 34.10363917507688 37.75359068114551 10.530325623591859 7 55.39335219626133 5.452873171452988 35.68050644204913 3.473268190236555 8 54.05030838130514 12.884348865592868 28.14226891451284 4.92307383858914 9 48.80168613524669 7.454031011054611 28.80639769033555 14.937885163363148 10 29.877023399888223 21.157388495284685 35.85769098714597 13.107897117681114 11 25.721080951032405 19.937897694094765 39.64698422882119 14.694037126051644 12 20.251416599209563 17.995383678471452 43.28440500327052 18.468794719048468 13 19.9426593721101 20.109568717279128 47.35589032101228 12.591881589598492 14 15.436107052546369 27.02953994671933 41.247409271237714 16.28694372949659 15 13.453494695741306 21.070174603214383 49.70690618742466 15.76942451361965 16 14.712081379583427 22.106716722762577 42.121302494367434 21.05989940328656 17 14.811826003273026 22.92948456088557 44.57431851616088 17.684370919680518 18 14.670980579872136 21.395973625316085 44.91440257230859 19.01864322250319 19 15.581714153962592 22.683380991882593 42.3801874096221 19.354717444532714 20 17.721963114538404 22.176888819830634 46.65341750643453 13.44773055919643 21 16.23832449081372 26.703490309985238 42.995446332129546 14.062738867071491 22 14.537402980810437 20.92832672128395 44.894854630982486 19.639415666923128 23 16.240580022505196 25.04767943381142 43.08491575589132 15.62682478779206 24 16.528786849749007 22.58514005598731 42.040604582739164 18.845468511524512 25 13.875780351311592 29.10838832236059 41.00757106804438 16.008260258283443 26 14.043441540377778 22.44404401795403 45.36225092038224 18.150263521285954 27 17.534753984146118 25.10381711146587 40.588292788062724 16.773136116325286 28 13.93993769720239 24.446956159982356 45.291326979417015 16.321779163398233 29 19.474260624180804 21.52428831709768 41.776957989469174 17.224493069252343 30 14.580007468316044 29.57778952881943 41.5681960006917 14.274007002172828 31 20.324094842601482 22.423744232730773 39.025459940504085 18.22670098416366 32 21.601978853137318 25.551665459539517 37.50723649751014 15.339119189813017 33 16.924507354286387 26.476684067675976 36.45239950979778 20.14640906823986 34 20.62382994293505 23.988581997348497 38.32799941857405 17.0595886411424 35 16.94631082730396 27.079161643931744 34.91563058400728 21.058896944757016 36 21.725782481535965 29.304118350254 33.26282708342209 15.707272084787943 37 19.235926108781786 28.453532287936163 36.139131219315374 16.171410383966677 38 19.671494339868527 28.818928421954844 32.58942556620111 18.920151671975518 39 21.517271107390876 26.12256559211466 36.47395236818297 15.886210932311496 40 17.30769712720447 26.889696981847983 36.145145970492635 19.657459920454915 41 16.37866868494984 29.02042258639313 35.47124322400688 19.129665504650152 42 17.02274829018167 25.90027041318834 36.6443703182054 20.432610978424588 43 19.987268776674792 27.695423024968736 33.1345123916405 19.182795806715973 44 18.663021059147557 25.971946198050723 35.528383360190865 19.83664938261085 45 17.549289632824504 24.91059322989632 35.26022570353793 22.27989143374125 46 21.666888042925276 27.778627082920863 33.57509291537495 16.979391958778905 47 15.649380104706792 26.417037785168123 41.22059350557242 16.712988604552663 48 18.454760299634852 26.321052380964318 35.65970542756109 19.564481891839737 49 16.9919226903982 23.631706760830937 40.26048884890193 19.11588169986893 50 18.30188537387944 24.29182570253547 37.12429733922445 20.281991584360647 51 17.865565298895543 23.20090020775953 34.96174367636628 23.97179081697864 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 336.0 1 957.0 2 1578.0 3 14882.5 4 28187.0 5 18372.0 6 8557.0 7 8099.0 8 7641.0 9 7479.0 10 7317.0 11 6861.0 12 6405.0 13 6176.5 14 5948.0 15 5364.0 16 4780.0 17 4485.5 18 4191.0 19 3956.5 20 3722.0 21 3561.0 22 3400.0 23 3600.5 24 3801.0 25 3913.0 26 4706.0 27 5387.0 28 6320.0 29 7253.0 30 8036.0 31 8819.0 32 9266.0 33 9713.0 34 10150.0 35 10587.0 36 11267.5 37 11948.0 38 13353.5 39 14759.0 40 15669.5 41 16580.0 42 18442.5 43 20305.0 44 21818.5 45 23332.0 46 39980.0 47 56628.0 48 43720.0 49 30812.0 50 29565.5 51 28319.0 52 24129.0 53 19939.0 54 17222.5 55 14506.0 56 12091.5 57 9677.0 58 8094.0 59 6511.0 60 5719.0 61 4927.0 62 4126.5 63 3326.0 64 2703.5 65 2081.0 66 1679.5 67 1278.0 68 1071.5 69 865.0 70 704.5 71 544.0 72 484.0 73 424.0 74 355.5 75 222.0 76 157.0 77 119.5 78 82.0 79 60.0 80 38.0 81 29.5 82 21.0 83 15.0 84 9.0 85 8.5 86 8.0 87 7.5 88 7.0 89 4.5 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 399019.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.30778635926022 #Duplication Level Percentage of deduplicated Percentage of total 1 79.42403533903541 31.219830128971378 2 8.73703221195227 6.868667912027891 3 3.123001609687913 3.6827484021971473 4 1.6654719861076028 2.618640680690018 5 1.0944403851209614 2.1510014420640613 6 0.768593297686212 1.8127020685565345 7 0.5845574820413084 1.6084362433150792 8 0.4674618133692388 1.469991127282433 9 0.34973121009335756 1.2372443720563724 >10 3.6291721876691754 27.7187061091613 >50 0.10968001478464816 2.7345103846010823 >100 0.03912561930914349 3.118995755845472 >500 0.0012828071904637211 0.34868411044655145 >1k 0.003848421571391163 2.8043480553123583 >5k 0.0019242107856955815 6.202190250893106 >10k+ 6.414035952318606E-4 4.403302956579191 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17465 4.376984554620206 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCG 8779 2.200145857716049 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGC 8064 2.0209563955601113 No Hit GAATCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTC 7757 1.9440177034176318 No Hit GCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGC 2484 0.6225267468466413 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGGATCAT 2427 0.6082417128006435 No Hit GAATGACTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCT 1793 0.4493520358679661 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAGGATCATCGTA 1768 0.44308667005831803 No Hit GAACTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCT 1333 0.33406930497044 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTC 1318 0.33031008548465113 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCC 847 0.21227059363087974 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATG 536 0.1343294429588566 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGAGGATCA 483 0.1210468674424025 No Hit CCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGC 450 0.11277658457366693 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 429 0.10751367729356245 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGAGGATCATCGT 427 0.1070124480287906 No Hit GAATGATCCGGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGC 417 0.10450630170493135 No Hit GAATGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTT 416 0.10425568707254543 No Hit CTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGCT 409 0.10250138464584393 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTAT 401 0.10049646758675651 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1060099894992469 0.0 2 0.0 0.0 0.0 0.9473233104188021 0.0 3 0.0 0.0 0.0 1.0981933191151299 0.0 4 0.0 0.0 0.0 1.6310000275676095 0.0 5 0.0 0.0 0.0 4.131382214881998 0.0 6 0.0 0.0 0.0 4.580734250749964 0.0 7 0.0 0.0 0.0 5.359644528205424 0.0 8 0.0 0.0 0.0 6.1322894398512355 0.0 9 0.0 0.0 0.0 6.345311877379273 0.0 10 0.0 0.0 0.0 9.193296559812941 0.0 11 0.0 0.0 0.0 10.145632162879462 0.0 12 0.0 0.0 0.0 13.037725020613054 0.0 13 0.0 0.0 0.0 13.474045095596951 0.0 14 0.0 0.0 0.0 13.699598264744285 0.0 15 0.0 0.0 0.0 14.394302025718073 0.0 16 0.0 0.0 0.0 14.953423270571076 0.0 17 0.0 0.0 0.0 15.523320944616673 0.0 18 0.0 0.0 0.0 16.144594618301383 0.0 19 0.0 0.0 0.0 17.16860600623028 0.0 20 0.0 0.0 0.0 17.643771349233997 0.0 21 0.0 0.0 0.0 18.066057004804282 0.0 22 0.0 0.0 0.0 18.56452950861989 0.0 23 2.5061463238592647E-4 0.0 0.0 19.026662890739537 0.0 24 2.5061463238592647E-4 0.0 0.0 19.401081151524114 0.0 25 2.5061463238592647E-4 0.0 0.0 19.720364193183784 0.0 26 2.5061463238592647E-4 0.0 0.0 20.05267919572752 0.0 27 2.5061463238592647E-4 0.0 0.0 20.39927923231726 0.0 28 2.5061463238592647E-4 0.0 0.0 20.73384976655247 0.0 29 2.5061463238592647E-4 0.0 0.0 21.061904320345647 0.0 30 2.5061463238592647E-4 0.0 0.0 21.434818893335905 0.0 31 2.5061463238592647E-4 0.0 0.0 21.813497602871042 0.0 32 2.5061463238592647E-4 0.0 0.0 22.180648039316424 0.0 33 2.5061463238592647E-4 0.0 0.0 22.524491314949916 0.0 34 2.5061463238592647E-4 0.0 0.0 22.904172483014595 0.0 35 2.5061463238592647E-4 0.0 0.0 23.277337670637237 0.0 36 2.5061463238592647E-4 0.0 0.0 23.636719053478657 0.0 37 2.5061463238592647E-4 0.0 0.0 24.013894075219476 0.0 38 2.5061463238592647E-4 0.0 0.0 24.377535906811456 0.0 39 2.5061463238592647E-4 0.0 0.0 24.76047506509715 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCCCG 20 7.027743E-4 45.000004 36 CGCGCAA 20 7.027743E-4 45.000004 18 CACGACC 20 7.027743E-4 45.000004 27 TCGGCTA 20 7.027743E-4 45.000004 1 CTGCGAG 20 7.027743E-4 45.000004 1 CCGTATG 20 7.027743E-4 45.000004 30 TTGCGCA 20 7.027743E-4 45.000004 32 CTACCGT 20 7.027743E-4 45.000004 27 ACCGTAT 20 7.027743E-4 45.000004 29 CGCAATC 20 7.027743E-4 45.000004 20 TAAGACG 20 7.027743E-4 45.000004 1 CGATAGA 20 7.027743E-4 45.000004 10 CCCATCG 55 1.8189894E-12 45.000004 40 TCGAACG 20 7.027743E-4 45.000004 1 TACCGTA 20 7.027743E-4 45.000004 28 CCATTAC 20 7.027743E-4 45.000004 6 CTAGATG 25 3.8862127E-5 45.0 1 AACCGCA 25 3.8862127E-5 45.0 21 CGGCGAT 70 0.0 45.0 31 CGGCGAA 75 0.0 45.0 31 >>END_MODULE