##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552182_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 389261 Sequences flagged as poor quality 0 Sequence length 51 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.75303459632483 31.0 30.0 33.0 28.0 34.0 2 30.72820035914207 31.0 30.0 33.0 26.0 34.0 3 30.399225712311278 31.0 30.0 34.0 25.0 34.0 4 34.52127235967641 35.0 35.0 37.0 32.0 37.0 5 35.219313005926615 35.0 35.0 37.0 33.0 37.0 6 35.187465479459796 36.0 35.0 37.0 33.0 37.0 7 35.65199185122579 37.0 35.0 37.0 35.0 37.0 8 35.07605436969026 37.0 35.0 37.0 32.0 37.0 9 37.14596890004393 39.0 37.0 39.0 33.0 39.0 10 36.88917461548935 39.0 37.0 39.0 32.0 39.0 11 37.15593393635633 39.0 37.0 39.0 34.0 39.0 12 37.36273091832986 39.0 37.0 39.0 34.0 39.0 13 37.2358443306676 39.0 37.0 39.0 34.0 39.0 14 38.45369045447656 40.0 38.0 41.0 34.0 41.0 15 38.50771076475681 40.0 38.0 41.0 34.0 41.0 16 38.41282841075782 40.0 38.0 41.0 34.0 41.0 17 38.06667505863675 40.0 37.0 41.0 33.0 41.0 18 37.68606667505863 39.0 37.0 40.0 33.0 41.0 19 36.91247774629362 37.0 36.0 40.0 33.0 41.0 20 36.30124261099879 36.0 35.0 40.0 32.0 41.0 21 36.53285327839162 37.0 35.0 40.0 33.0 41.0 22 36.82017720758052 38.0 35.0 40.0 33.0 41.0 23 36.87111732231074 38.0 35.0 40.0 33.0 41.0 24 36.745404754136686 38.0 35.0 40.0 33.0 41.0 25 36.31962102548162 37.0 35.0 40.0 33.0 41.0 26 36.46738563585872 37.0 35.0 40.0 33.0 41.0 27 36.66892650432486 38.0 35.0 40.0 33.0 41.0 28 36.48963805775559 38.0 35.0 40.0 33.0 41.0 29 36.400425421503826 38.0 35.0 40.0 33.0 41.0 30 35.946318793817 37.0 35.0 40.0 31.0 41.0 31 35.63141182908126 38.0 35.0 40.0 30.0 41.0 32 34.94697645024804 38.0 35.0 40.0 23.0 41.0 33 34.06242341256895 38.0 34.0 40.0 17.0 41.0 34 33.2562625076748 38.0 33.0 40.0 12.0 41.0 35 32.7195326528987 38.0 33.0 40.0 10.0 41.0 36 32.35100356829993 38.0 31.0 40.0 8.0 41.0 37 31.989074168745393 38.0 30.0 40.0 8.0 41.0 38 31.920053640102655 37.0 30.0 40.0 8.0 41.0 39 31.880452960866872 37.0 30.0 40.0 7.0 41.0 40 31.69432334603261 37.0 29.0 40.0 7.0 41.0 41 31.49340673738186 37.0 27.0 40.0 7.0 41.0 42 31.267758650365693 37.0 25.0 40.0 7.0 41.0 43 31.325830227019917 37.0 25.0 40.0 7.0 41.0 44 31.37584808136443 37.0 26.0 40.0 7.0 41.0 45 31.334372053712034 37.0 25.0 40.0 7.0 41.0 46 31.226357122855873 36.0 25.0 40.0 7.0 41.0 47 31.176652682904272 36.0 25.0 40.0 7.0 41.0 48 31.198689311284717 36.0 25.0 40.0 7.0 41.0 49 31.122221337354627 36.0 24.0 40.0 7.0 41.0 50 31.033620116066086 36.0 24.0 40.0 7.0 41.0 51 29.80440886705835 35.0 23.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 8.0 10 9.0 11 11.0 12 16.0 13 9.0 14 16.0 15 17.0 16 55.0 17 97.0 18 278.0 19 597.0 20 822.0 21 1277.0 22 1954.0 23 3159.0 24 5258.0 25 9445.0 26 15520.0 27 19446.0 28 18209.0 29 14719.0 30 11767.0 31 10702.0 32 11262.0 33 14041.0 34 21208.0 35 28284.0 36 32436.0 37 42095.0 38 74369.0 39 52168.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.76582036217345 11.803648451809968 13.61477260758206 37.81575857843452 2 47.692422307911656 26.336057298316558 15.174394557893034 10.797125835878754 3 19.975543401470993 24.627691959893234 45.96376210306195 9.433002535573818 4 18.259728048789885 15.494745170977827 54.836729084084965 11.408797696147314 5 22.626463992025915 18.579307970744566 45.03584998240255 13.758378054826967 6 15.246839524123917 29.289859503006983 46.55847875846797 8.904822214401134 7 47.593773843256834 4.924973218483228 43.90575988860944 3.575493049650492 8 45.341557464015146 11.654905063697623 38.4007131461924 4.602824326094831 9 41.5972830568693 6.975782315721328 38.52993235900848 12.897002268400893 10 24.678043780394134 18.53075442954727 44.97676366242701 11.81443812763159 11 20.605198054775585 17.12501380821608 48.792712344673625 13.477075792334706 12 17.827884118881677 15.986189214948327 51.50991237241851 14.676014293751493 13 15.221149819786724 18.39459899656015 55.04070533652228 11.343545847130846 14 13.454982646604721 23.003075057609163 48.249375097942 15.29256719784412 15 11.631784329794147 18.452657728362205 57.2030077505838 12.712550191259849 16 12.79681242148584 20.126598862973687 48.760600214252136 18.315988501288338 17 12.056435142487945 19.714536005405115 52.791314824757684 15.437714027349259 18 12.338764993153694 20.101422952723237 52.20173611021911 15.358075943903962 19 13.268475393116699 20.65888953684032 49.97289736192426 16.099737708118717 20 13.44830332347705 20.676872329876357 54.29801598413404 11.576808362512555 21 13.11793372570075 24.269834378476137 50.20795815660958 12.404273739213535 22 12.226244088156788 19.05328301576577 50.29530315135603 18.42516974472141 23 12.806574509133975 22.959659457279304 50.65752798251045 13.57623805107627 24 14.035569964625278 19.727637754617085 48.679420748546605 17.557371532211036 25 11.23487839778452 26.45294545305078 48.08547478427071 14.226701364893993 26 12.498554954131032 20.25658876691988 50.70659531779449 16.5382609611546 27 15.917083910281276 21.854488376693272 47.247990422878225 14.980437290147227 28 10.967705472677714 21.093302437182253 52.34611224859413 15.592879841545903 29 16.179375791564016 18.052155237745367 50.11470452986556 15.65376444082505 30 16.136987779407647 22.604113949252557 48.55662396181482 12.702274309524972 31 17.00504288896139 22.43250672428011 45.3374471113212 15.225003275437304 32 19.45686827090307 23.627334873002948 44.192713886055884 12.723082970038096 33 17.756980534911023 22.69222963512913 41.360167085837006 18.190622744122837 34 19.03863988429357 23.727267822874627 43.003794369330606 14.230297923501197 35 19.364385335289175 25.549181654468338 38.56512725395043 16.52130575629205 36 17.579721574984394 29.962929756641433 38.9507297160517 13.506618952322476 37 21.248468251378895 26.553649094052577 38.90962618911219 13.288256465456339 38 19.05739336845972 29.555491045853554 35.529374892424364 15.857740693262363 39 24.210491161457224 24.462764058048457 37.11751241454962 14.209232365944699 40 20.53583585306517 26.822106504376244 38.203673113926136 14.438384528632461 41 18.18137445056145 30.519625649628395 35.01429632046365 16.284703579346505 42 16.691114701960895 28.299007606721453 39.812876193607885 15.197001497709763 43 19.208191932919043 26.77971849221987 36.793308345814246 17.218781229046833 44 18.88938270209448 24.455570940834043 38.128402280218154 18.52664407685332 45 17.343633192125594 24.049930509349768 38.562301386473344 20.044134912051298 46 20.220109386761067 27.262171139672354 37.37004220818423 15.147677265382352 47 15.71773180462466 23.225291000125882 45.30482118681296 15.752156008436499 48 17.577409501594047 25.42407279434621 38.84694331052944 18.151574393530304 49 16.21482758354934 22.34310655318668 44.39514875623296 17.046917107031014 50 17.024567064257656 22.428910165672903 41.00693365120061 19.53958911886883 51 17.308181400140267 21.42110306452483 38.51349094823268 22.757224587102225 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 466.0 1 1045.0 2 1624.0 3 21384.0 4 41144.0 5 26924.0 6 12704.0 7 11998.5 8 11293.0 9 10777.0 10 10261.0 11 9870.0 12 9479.0 13 8883.0 14 8287.0 15 7457.5 16 6628.0 17 6009.0 18 5390.0 19 4968.0 20 4546.0 21 4247.5 22 3949.0 23 3895.5 24 3842.0 25 4148.0 26 4795.5 27 5137.0 28 5564.0 29 5991.0 30 6843.0 31 7695.0 32 8194.5 33 8694.0 34 9324.0 35 9954.0 36 10126.5 37 10299.0 38 11183.5 39 12068.0 40 13419.0 41 14770.0 42 16295.0 43 17820.0 44 18865.5 45 19911.0 46 37877.5 47 55844.0 48 40884.5 49 25925.0 50 24880.0 51 23835.0 52 19742.5 53 15650.0 54 12961.5 55 10273.0 56 8367.5 57 6462.0 58 5431.5 59 4401.0 60 3795.5 61 3190.0 62 2819.0 63 2448.0 64 2033.0 65 1618.0 66 1332.0 67 1046.0 68 900.5 69 755.0 70 651.5 71 548.0 72 448.5 73 349.0 74 286.0 75 191.0 76 159.0 77 115.0 78 71.0 79 50.5 80 30.0 81 21.0 82 12.0 83 10.0 84 8.0 85 6.0 86 4.0 87 2.5 88 1.0 89 1.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 389261.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.16914299918766 #Duplication Level Percentage of deduplicated Percentage of total 1 80.56857426229823 33.16939155045226 2 8.428540597062401 6.939915862298412 3 3.0952749259077557 3.8228944813948917 4 1.6717799286889095 2.753029877894619 5 1.0630467730769646 2.1882362307815275 6 0.7447101630344659 1.8395447516948569 7 0.6183641344381974 1.7820265033378535 8 0.4307593541011832 1.4187194757783461 9 0.39189831198258057 1.4520705882436007 >10 2.841116377092267 21.185703576463453 >50 0.09476309890716991 2.6843651998340086 >100 0.0410640095264403 3.4279559474675154 >500 0.0037905239562867968 1.0028981891832125 >1k 0.0037905239562867968 3.083339738788118 >5k 0.0018952619781433984 6.584380331266132 >10k+ 6.317539927144661E-4 6.665527695121205 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 25628 6.583757427535766 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCG 9624 2.4723771454114334 No Hit GAATCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTC 8257 2.121198887122008 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGC 7435 1.9100295174702835 No Hit GCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC 2627 0.6748685329380545 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCT 2365 0.6075615075746092 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTC 1785 0.45856122241889113 No Hit GAACTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCT 1751 0.44982672294424564 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGAGGGAATCGTA 1724 0.4428905027732036 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCC 1603 0.41180596052520035 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGAGGGAAT 771 0.19806762043975637 No Hit CTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGCT 740 0.1901038120952266 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGC 676 0.1736624013194232 No Hit CCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC 610 0.15670719645687597 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 553 0.1420640649846761 No Hit GAATGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTT 506 0.12998990394619547 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 479 0.12305368377515344 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGAGGGAATCGT 459 0.11791574290771487 No Hit GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA 459 0.11791574290771487 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 423 0.10866744934632548 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 410 0.10532778778249041 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTAT 401 0.10301571439214306 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 390 0.10018984691505185 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.20731591400114577 0.0 2 0.0 0.0 0.0 1.1948281487228363 0.0 3 0.0 0.0 0.0 1.441963104446631 0.0 4 0.0 0.0 0.0 2.19210247109266 0.0 5 0.0 0.0 0.0 5.107627016320669 0.0 6 0.0 0.0 0.0 5.658157380266711 0.0 7 0.0 0.0 0.0 6.7152887137421935 0.0 8 0.0 0.0 0.0 7.790659737297084 0.0 9 0.0 0.0 0.0 8.070677514572484 0.0 10 0.0 0.0 0.0 11.326590642268298 0.0 11 0.0 0.0 0.0 12.521161893947763 0.0 12 0.0 0.0 0.0 15.41793295500962 0.0 13 0.0 0.0 0.0 15.870842442474329 0.0 14 0.0 0.0 0.0 16.11900498637161 0.0 15 0.0 0.0 0.0 16.822902885210695 0.0 16 0.0 0.0 0.0 17.39244363036626 0.0 17 0.0 0.0 0.0 17.956589537611013 0.0 18 0.0 0.0 0.0 18.535635473371336 0.0 19 0.0 0.0 0.0 19.114938306175034 0.0 20 0.0 0.0 0.0 19.505164915056994 0.0 21 0.0 0.0 0.0 19.898474288459415 0.0 22 0.0 0.0 0.0 20.35626481974819 0.0 23 0.0 0.0 0.0 20.76164835418909 0.0 24 0.0 0.0 0.0 21.096898995789456 0.0 25 0.0 0.0 0.0 21.40620303600926 0.0 26 0.0 0.0 0.0 21.702148429973718 0.0 27 0.0 0.0 0.0 22.02095766079828 0.0 28 0.0 0.0 0.0 22.338225509362612 0.0 29 0.0 0.0 0.0 22.640079535324627 0.0 30 0.0 0.0 0.0 23.022342335862056 0.0 31 0.0 0.0 0.0 23.34526191938057 0.0 32 0.0 0.0 0.0 23.670750473332802 0.0 33 0.0 0.0 0.0 23.989045910070622 0.0 34 0.0 0.0 0.0 24.295010288726587 0.0 35 0.0 0.0 0.0 24.629490239196837 0.0 36 0.0 0.0 0.0 24.929289088811878 0.0 37 0.0 0.0 0.0 25.25195177528702 0.0 38 0.0 0.0 0.0 25.55329200716229 0.0 39 0.0 0.0 0.0 25.88109263450487 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCTCGTG 30 2.1617889E-6 45.000004 15 GGGTAAC 20 7.0275326E-4 45.0 7 CGACAGG 20 7.0275326E-4 45.0 2 GCACCGA 35 1.209155E-7 45.0 9 CGGATGG 35 1.209155E-7 45.0 2 GGGCCTA 20 7.0275326E-4 45.0 7 GAGCCGT 20 7.0275326E-4 45.0 33 CGTAAGG 25 3.886036E-5 45.0 2 TCGAGGA 20 7.0275326E-4 45.0 3 CGCACGG 20 7.0275326E-4 45.0 2 CGTTTTT 11705 0.0 43.712086 1 ACGGCTG 820 0.0 43.353657 8 CATGGGA 120 0.0 43.125004 4 TACGGCT 825 0.0 42.818184 7 CTACGAA 65 0.0 41.538464 11 CGAATAT 65 0.0 41.538464 14 GCTACGA 65 0.0 41.538464 10 AGCTACG 65 0.0 41.538464 9 CGGCTGT 845 0.0 41.27219 9 ACCCGTC 60 3.6379788E-12 41.250004 17 >>END_MODULE