SRR3552180_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552180_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	804155
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCG	36658	4.558573906771705	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTC	33940	4.220579365918263	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29980	3.7281369885158955	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGC	23478	2.9195863981446366	No Hit
GCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	9395	1.1683071049735436	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCT	8211	1.0210718082956645	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTC	6383	0.7937524482220468	No Hit
GAACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCT	6363	0.7912653655078934	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTA	5835	0.7256063818542445	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTT	4578	0.5692932332697054	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCC	2203	0.2739521609639933	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCCTCAAAT	1981	0.24634554283689092	No Hit
CCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	1882	0.23403448340183175	No Hit
CTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGCT	1662	0.20667657354614474	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATG	1442	0.17931866369045768	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCCCTCAAATCGT	1314	0.16340133431987613	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTAT	1180	0.14673788013504857	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACCGA	20	7.0320204E-4	45.000004	17
GCTCTCG	20	7.0320204E-4	45.000004	9
ACGATGG	30	2.1646847E-6	45.000004	2
CGAATAT	60	0.0	45.000004	14
CGGGACG	20	7.0320204E-4	45.000004	6
CATCGAA	20	7.0320204E-4	45.000004	21
GCTACGA	60	0.0	45.000004	10
CCAACCG	20	7.0320204E-4	45.000004	16
GACGATA	20	7.0320204E-4	45.000004	19
AAGATCG	20	7.0320204E-4	45.000004	2
CGGTATT	20	7.0320204E-4	45.000004	9
CGTGCGG	55	1.8189894E-12	45.0	2
TGACCGG	25	3.8897564E-5	45.0	2
CGTTTTT	14595	0.0	43.93628	1
TACGGCT	2925	0.0	43.0	7
ACGGCTG	2965	0.0	42.495785	8
AACACGT	60	3.6379788E-12	41.250004	41
CGGCTGT	3075	0.0	40.97561	9
GGCGACT	840	0.0	40.714287	10
GAATGAC	965	0.0	40.569946	1