SRR3552178_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552178_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	481324
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19884	4.131105035277692	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTC	11745	2.440144268725432	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCG	7582	1.5752383010196873	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGC	5064	1.0520979631183984	No Hit
GAACTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCT	3649	0.7581171934081824	No Hit
GCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTTCTGC	2165	0.4498009656696944	TruSeq Adapter, Index 13 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCT	1705	0.3542312454812143	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTC	1525	0.3168343984509395	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCCGTCTT	1342	0.2788142706368268	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTATACGCTCGTA	1337	0.27777546933043024	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTATACGCTCGTATGCC	866	0.17992038626787776	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTATACGCT	513	0.10658101403628326	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACGAG	25	3.8874146E-5	45.000004	1
TCTACGT	20	7.0291955E-4	45.0	11
CTAGTAC	20	7.0291955E-4	45.0	23
CGTTTTT	10025	0.0	43.83292	1
TACGGCT	480	0.0	43.593746	7
CGAACGG	65	0.0	41.538464	2
ACGGCTG	510	0.0	41.47059	8
ACGGGTA	55	6.002665E-11	40.909092	5
GCGAACG	50	1.0786607E-9	40.500004	1
CAAGGGC	130	0.0	39.807693	4
ATAGCGG	40	3.452642E-7	39.375	2
TAGGGTA	80	0.0	39.375	5
GCTACGA	40	3.452642E-7	39.375	10
CACCCGT	40	3.452642E-7	39.375	16
CGGCTGT	535	0.0	39.112152	9
GCGAATG	35	6.2407216E-6	38.57143	1
TACGGGA	105	0.0	38.57143	4
CGCACGG	35	6.2407216E-6	38.57143	2
TGATACC	865	0.0	38.49711	4
GATACCT	870	0.0	38.27586	5