SRR3552166_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552166_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	551590
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20104	3.644736126470748	No Hit
GAATCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTC	6843	1.2405953697492704	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCG	6831	1.2384198408238003	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGC	5351	0.9701046066824996	No Hit
GCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	2505	0.4541416631918635	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCC	2081	0.3772729744919233	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCT	1754	0.31798981127286574	No Hit
GAACTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCT	1661	0.3011294621004732	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACCCGTAATCGTA	1504	0.2726662919922406	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTC	1426	0.2585253539766856	No Hit
CTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGCT	929	0.16842219764680286	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGC	839	0.15210573070577785	No Hit
CCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	712	0.1290813829112203	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	652	0.11820373828387028	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACCCGTAAT	582	0.10551315288529522	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAC	30	2.1634405E-6	45.000004	26
GGGTCCG	30	2.1634405E-6	45.000004	7
TCGGGGC	30	2.1634405E-6	45.000004	5
TCGATTG	20	7.03009E-4	45.000004	1
CGCGACC	20	7.03009E-4	45.000004	10
TATTGCG	20	7.03009E-4	45.000004	1
CGCTCTA	20	7.03009E-4	45.000004	28
TACGCGG	20	7.03009E-4	45.000004	2
GCTACGA	120	0.0	45.000004	10
GTAAGCG	20	7.03009E-4	45.000004	1
AGGTGCG	20	7.03009E-4	45.000004	1
ACGACCA	30	2.1634405E-6	45.000004	28
CGACGGT	25	3.8881582E-5	45.0	28
TGGTTCG	25	3.8881582E-5	45.0	1
TTGAGCG	25	3.8881582E-5	45.0	1
TCGTGCG	35	1.2103919E-7	45.0	1
CATAGCG	35	1.2103919E-7	45.0	1
GCGATCA	25	3.8881582E-5	45.0	9
CGGTCTA	25	3.8881582E-5	45.0	31
GTGCGAG	25	3.8881582E-5	45.0	1