##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552166_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 551590 Sequences flagged as poor quality 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.488904802480103 31.0 30.0 33.0 28.0 34.0 2 30.534105041788283 31.0 30.0 33.0 25.0 34.0 3 30.012012545550135 31.0 30.0 34.0 25.0 34.0 4 34.46786018600773 35.0 33.0 37.0 32.0 37.0 5 35.12801537373774 35.0 35.0 37.0 33.0 37.0 6 35.05667978027158 35.0 35.0 37.0 32.0 37.0 7 35.60032451639805 37.0 35.0 37.0 35.0 37.0 8 35.23709276817927 37.0 35.0 37.0 32.0 37.0 9 37.28293478852046 39.0 37.0 39.0 34.0 39.0 10 36.73076560488769 39.0 35.0 39.0 32.0 39.0 11 36.92055874834569 39.0 37.0 39.0 33.0 39.0 12 37.17376855998115 39.0 37.0 39.0 34.0 39.0 13 37.12106818470241 39.0 37.0 39.0 33.0 39.0 14 38.17207527330082 40.0 38.0 41.0 33.0 41.0 15 38.36164905092551 40.0 38.0 41.0 34.0 41.0 16 38.1609691981363 40.0 37.0 41.0 34.0 41.0 17 37.947587882303885 40.0 37.0 41.0 33.0 41.0 18 37.736441922442395 39.0 37.0 40.0 33.0 41.0 19 37.12978299098968 38.0 36.0 40.0 32.0 41.0 20 36.88734386047608 38.0 35.0 40.0 32.0 41.0 21 37.0604271288457 39.0 35.0 40.0 33.0 41.0 22 37.3977320110952 39.0 35.0 40.0 33.0 41.0 23 37.466979096792905 39.0 35.0 41.0 33.0 41.0 24 37.4128591888903 39.0 35.0 41.0 33.0 41.0 25 36.958253412861005 39.0 35.0 40.0 33.0 41.0 26 37.09366921082688 39.0 35.0 40.0 33.0 41.0 27 37.322843053717435 39.0 35.0 41.0 33.0 41.0 28 37.20448884134955 39.0 35.0 41.0 33.0 41.0 29 37.1459109120905 39.0 35.0 41.0 33.0 41.0 30 36.80891966859443 39.0 35.0 41.0 32.0 41.0 31 36.69237839699777 39.0 35.0 41.0 32.0 41.0 32 36.33438060878551 39.0 35.0 41.0 31.0 41.0 33 35.86415272213057 39.0 35.0 41.0 27.0 41.0 34 35.41570369296035 39.0 35.0 41.0 23.0 41.0 35 35.179736761000015 39.0 35.0 41.0 20.0 41.0 36 34.95821352816404 39.0 35.0 41.0 18.0 41.0 37 34.633849417139544 39.0 35.0 41.0 16.0 41.0 38 34.639476785293425 39.0 35.0 41.0 18.0 41.0 39 34.55909099149731 39.0 35.0 41.0 16.0 41.0 40 34.43842165376457 39.0 35.0 41.0 15.0 41.0 41 34.24989756884643 39.0 34.0 41.0 15.0 41.0 42 34.15439728784061 39.0 34.0 41.0 15.0 41.0 43 34.23426095469461 39.0 34.0 41.0 15.0 41.0 44 34.207659674758425 39.0 34.0 41.0 15.0 41.0 45 34.182628401530124 39.0 34.0 41.0 15.0 41.0 46 34.09047843506953 38.0 34.0 40.0 15.0 41.0 47 34.04436991243496 38.0 34.0 40.0 15.0 41.0 48 34.0399572145978 38.0 34.0 40.0 15.0 41.0 49 34.00994579307094 38.0 34.0 40.0 15.0 41.0 50 33.92682245871028 38.0 34.0 40.0 13.0 41.0 51 32.64495005348175 37.0 31.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 5.0 9 15.0 10 22.0 11 14.0 12 11.0 13 19.0 14 22.0 15 37.0 16 68.0 17 118.0 18 315.0 19 539.0 20 878.0 21 1306.0 22 2022.0 23 3082.0 24 5048.0 25 8912.0 26 13263.0 27 15821.0 28 14954.0 29 12872.0 30 11994.0 31 12592.0 32 14922.0 33 20148.0 34 30469.0 35 38258.0 36 46948.0 37 71119.0 38 126731.0 39 99060.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.88777896626117 16.815388241266156 18.91839953588716 24.37843325658551 2 41.79589912797549 24.164324951503836 20.212839246541815 13.826936673978862 3 25.423593611196722 24.540872749687267 36.98943055530376 13.046103083812252 4 22.5783643648362 21.356079696876304 40.89504885875378 15.170507079533714 5 23.15778023531971 24.74772929168404 35.29306187566853 16.801428597327725 6 19.64538878514839 32.15141681321271 36.576805235772945 11.626389165865952 7 63.67610000181294 5.599267571928425 26.807230007795646 3.9174024184629888 8 63.08381225185373 8.497978571040084 23.841621494225784 4.5765876828804 9 57.7189579216447 7.685781105531282 25.161623669754707 9.43363730306931 10 28.726046520060187 27.615620297684874 31.935676861436935 11.722656320817999 11 21.322177704454397 22.034844721622946 41.42279591725738 15.220181656665277 12 20.320709222429702 19.77374499175112 43.79919868017912 16.106347105640058 13 18.70773581827082 22.00203049366377 45.423231023042476 13.867002665022934 14 15.795971645606338 25.59890498377418 41.97302344132417 16.63209992929531 15 14.438985478344424 23.25912362443119 47.04490654290324 15.256984354321142 16 16.260447071194186 24.272920103700212 41.300241121122575 18.16639170398303 17 16.51897242517087 22.89508511756921 42.14742834351602 18.438514113743903 18 16.77804166137892 22.60646494679019 43.99535887162566 16.620134520205223 19 16.52785583494987 24.199858590619844 41.356442285030546 17.915843289399735 20 16.98435432114433 24.437897713881686 43.83872078899182 14.73902717598216 21 16.44065338385395 26.17813956018057 42.20816185935205 15.173045196613428 22 15.4234123171196 22.37658405699886 42.435323337986546 19.764680287894993 23 14.642941315107235 25.743033775086566 42.52615167062493 17.087873239181274 24 15.9237839699777 23.465980166427965 41.73045196613427 18.87978389746007 25 14.772747874326948 27.8059790786635 39.879802026867786 17.54147102014177 26 14.46110335575337 24.757337877771533 41.412099566707155 19.369459199767945 27 16.2718685980529 24.782175166337318 40.09064703856125 18.855309197048534 28 13.141282474301564 24.439710654652913 42.71524139306369 19.703765477981836 29 16.00137783498613 24.167406950814918 40.04441704889501 19.78679816530394 30 16.449174205478705 24.64819884334379 40.16316466941025 18.739462281767256 31 16.71060026468935 24.36610525934118 38.25631356623579 20.666980909733677 32 17.34857412208343 26.37973857394079 36.41164633151435 19.86004097246143 33 17.856197538026432 24.674849072680797 35.83059881433673 21.638354574956036 34 16.497398429993293 26.766257546365964 37.47439221160644 19.2619518120343 35 15.555756993419026 28.405881179861854 34.50787722765097 21.53048459906815 36 17.267354375532552 29.573052448376515 33.215613045921785 19.943980130169148 37 15.726717308145544 27.506481263257132 35.66652767454087 21.100273754056456 38 17.24704943889483 27.92944034518392 33.18171105349988 21.641799162421364 39 18.145724179191067 26.442647618702296 35.574248989285515 19.83737921282112 40 19.214271469751083 27.16800522126942 35.54361029025181 18.07411301872768 41 16.27621965590384 29.406261897423814 34.699505067169454 19.61801337950289 42 16.612157580811836 28.11073442230642 35.67740531916822 19.59970267771352 43 18.232020159901378 26.654217806704256 33.90743124422125 21.206330789173116 44 17.729291684040682 25.496473830199967 34.800123279972446 21.974111205786905 45 17.208796388621984 25.52203629507424 34.10612955274751 23.163037763556265 46 19.156438659149007 27.276056491234428 34.1721205968201 19.39538425279646 47 14.998096412190215 26.148044743378236 39.339364382965606 19.514494461465944 48 16.841132000217556 26.46168349680016 35.62392356641709 21.0732609365652 49 17.248137203357565 24.94062618974238 38.10076324806468 19.71047335883537 50 17.29400460486956 24.87536032197828 36.32553164488116 21.505103428271 51 16.22745154915789 24.409434543773457 34.26131728276437 25.101796624304285 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 624.0 1 1338.0 2 2052.0 3 16801.5 4 31551.0 5 20292.0 6 9033.0 7 8556.5 8 8080.0 9 7999.5 10 7919.0 11 7572.5 12 7226.0 13 6864.5 14 6503.0 15 6024.0 16 5545.0 17 5379.0 18 5213.0 19 4997.0 20 4781.0 21 5020.0 22 5259.0 23 5120.5 24 4982.0 25 5645.0 26 7424.5 27 8541.0 28 9395.5 29 10250.0 30 11730.0 31 13210.0 32 15106.5 33 17003.0 34 18797.5 35 20592.0 36 21466.5 37 22341.0 38 23679.0 39 25017.0 40 26990.0 41 28963.0 42 30508.5 43 32054.0 44 33992.5 45 35931.0 46 50492.0 47 65053.0 48 54882.0 49 44711.0 50 42065.5 51 39420.0 52 33467.5 53 27515.0 54 23307.5 55 19100.0 56 15586.0 57 12072.0 58 10109.0 59 8146.0 60 6882.5 61 5619.0 62 4747.0 63 3875.0 64 3201.5 65 2528.0 66 2057.5 67 1587.0 68 1342.0 69 1097.0 70 877.0 71 657.0 72 559.5 73 462.0 74 418.5 75 284.0 76 193.0 77 138.5 78 84.0 79 69.5 80 55.0 81 37.5 82 20.0 83 21.5 84 23.0 85 18.0 86 13.0 87 9.0 88 5.0 89 3.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 551590.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.341714876808375 #Duplication Level Percentage of deduplicated Percentage of total 1 77.68471619673271 30.56249954897636 2 8.997916818005082 7.079869558783897 3 3.3694249548730606 3.9767686762025662 4 1.903329412819568 2.9952097230316213 5 1.2262685165948322 2.4121753171140323 6 0.8769322025787828 2.070001000808762 7 0.6635003743366152 1.827226978346472 8 0.5444701441552451 1.7136311336232324 9 0.4656506736773396 1.6487546432406872 >10 4.146919168642652 31.41738663995622 >50 0.08198650805139264 2.072976231137066 >100 0.031857614556924325 2.312215419177519 >500 0.002342471658597377 0.6845410973954011 >1k 0.0028109659903168523 2.0147331006001963 >5k 0.0014054829951584261 3.506568222387589 >10k+ 4.684943317194754E-4 3.705442709218402 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20104 3.644736126470748 No Hit GAATCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTC 6843 1.2405953697492704 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCG 6831 1.2384198408238003 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGC 5351 0.9701046066824996 No Hit GCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC 2505 0.4541416631918635 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCC 2081 0.3772729744919233 No Hit GAATGACTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCT 1754 0.31798981127286574 No Hit GAACTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCT 1661 0.3011294621004732 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACCCGTAATCGTA 1504 0.2726662919922406 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTC 1426 0.2585253539766856 No Hit CTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGCT 929 0.16842219764680286 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGC 839 0.15210573070577785 No Hit CCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC 712 0.1290813829112203 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 652 0.11820373828387028 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACCCGTAAT 582 0.10551315288529522 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.8129407712250042E-4 0.0 0.0 0.1829257238166029 0.0 2 1.8129407712250042E-4 0.0 0.0 0.9456299062709621 0.0 3 1.8129407712250042E-4 0.0 0.0 1.1978099675483602 0.0 4 1.8129407712250042E-4 0.0 0.0 1.7964430102068565 0.0 5 1.8129407712250042E-4 0.0 0.0 3.873891839953589 0.0 6 1.8129407712250042E-4 0.0 0.0 4.477419822694393 0.0 7 1.8129407712250042E-4 0.0 0.0 5.3218876339309995 0.0 8 1.8129407712250042E-4 0.0 0.0 6.3967802171903045 0.0 9 1.8129407712250042E-4 0.0 0.0 6.7898257763918854 0.0 10 1.8129407712250042E-4 0.0 0.0 8.89863848148081 0.0 11 1.8129407712250042E-4 0.0 0.0 10.259069236208052 0.0 12 1.8129407712250042E-4 0.0 0.0 12.313856306314472 0.0 13 1.8129407712250042E-4 0.0 0.0 12.785583494987218 0.0 14 1.8129407712250042E-4 0.0 0.0 13.013107561775957 0.0 15 1.8129407712250042E-4 0.0 0.0 13.587809786254283 0.0 16 1.8129407712250042E-4 0.0 0.0 14.198408238002864 0.0 17 1.8129407712250042E-4 0.0 0.0 14.87028408781885 0.0 18 1.8129407712250042E-4 0.0 0.0 15.605068982396345 0.0 19 1.8129407712250042E-4 0.0 0.0 16.1340850994398 0.0 20 1.8129407712250042E-4 0.0 0.0 16.578255588389926 0.0 21 1.8129407712250042E-4 0.0 0.0 17.0896861799525 0.0 22 1.8129407712250042E-4 0.0 0.0 17.643358291484617 0.0 23 1.8129407712250042E-4 0.0 0.0 18.149168766656395 0.0 24 1.8129407712250042E-4 0.0 0.0 18.558893380953243 0.0 25 1.8129407712250042E-4 0.0 0.0 18.938885766602006 0.0 26 1.8129407712250042E-4 0.0 0.0 19.316521329248175 0.0 27 1.8129407712250042E-4 0.0 0.0 19.729327942856106 0.0 28 1.8129407712250042E-4 0.0 0.0 20.09862397795464 0.0 29 1.8129407712250042E-4 0.0 0.0 20.508529886328613 0.0 30 1.8129407712250042E-4 0.0 0.0 20.9846081328523 0.0 31 3.6258815424500084E-4 0.0 0.0 21.39868380500009 0.0 32 3.6258815424500084E-4 0.0 0.0 21.786109247810874 0.0 33 3.6258815424500084E-4 0.0 0.0 22.15486140067804 0.0 34 3.6258815424500084E-4 0.0 0.0 22.543012019797313 0.0 35 3.6258815424500084E-4 0.0 0.0 22.959625809024818 0.0 36 3.6258815424500084E-4 0.0 0.0 23.349589368915318 0.0 37 3.6258815424500084E-4 0.0 0.0 23.73683351764898 0.0 38 3.6258815424500084E-4 0.0 0.0 24.156166718033322 0.0 39 3.6258815424500084E-4 0.0 0.0 24.754437172537575 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACACGAC 30 2.1634405E-6 45.000004 26 GGGTCCG 30 2.1634405E-6 45.000004 7 TCGGGGC 30 2.1634405E-6 45.000004 5 TCGATTG 20 7.03009E-4 45.000004 1 CGCGACC 20 7.03009E-4 45.000004 10 TATTGCG 20 7.03009E-4 45.000004 1 CGCTCTA 20 7.03009E-4 45.000004 28 TACGCGG 20 7.03009E-4 45.000004 2 GCTACGA 120 0.0 45.000004 10 GTAAGCG 20 7.03009E-4 45.000004 1 AGGTGCG 20 7.03009E-4 45.000004 1 ACGACCA 30 2.1634405E-6 45.000004 28 CGACGGT 25 3.8881582E-5 45.0 28 TGGTTCG 25 3.8881582E-5 45.0 1 TTGAGCG 25 3.8881582E-5 45.0 1 TCGTGCG 35 1.2103919E-7 45.0 1 CATAGCG 35 1.2103919E-7 45.0 1 GCGATCA 25 3.8881582E-5 45.0 9 CGGTCTA 25 3.8881582E-5 45.0 31 GTGCGAG 25 3.8881582E-5 45.0 1 >>END_MODULE