##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552163_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 628034 Sequences flagged as poor quality 0 Sequence length 51 %GC 35 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.11740447173242 31.0 28.0 33.0 25.0 33.0 2 28.827272090364534 31.0 28.0 33.0 16.0 34.0 3 28.66929815901687 31.0 27.0 33.0 16.0 34.0 4 33.452322644952346 35.0 32.0 35.0 28.0 37.0 5 34.473553979561615 35.0 35.0 35.0 32.0 37.0 6 33.63250397271485 35.0 33.0 37.0 28.0 37.0 7 34.76689478595108 35.0 35.0 37.0 32.0 37.0 8 33.9999554164265 35.0 35.0 37.0 29.0 37.0 9 36.34774231968333 39.0 35.0 39.0 32.0 39.0 10 36.237573125021896 37.0 35.0 39.0 32.0 39.0 11 36.74718406965228 39.0 35.0 39.0 32.0 39.0 12 36.82393787597487 39.0 35.0 39.0 33.0 39.0 13 36.82578650200467 39.0 37.0 39.0 33.0 39.0 14 37.64221045357417 39.0 37.0 41.0 32.0 41.0 15 37.93695086571746 39.0 37.0 41.0 33.0 41.0 16 37.47546470414022 39.0 36.0 41.0 32.0 41.0 17 37.359470984055 39.0 36.0 41.0 32.0 41.0 18 37.02958438555874 39.0 36.0 39.0 32.0 41.0 19 36.2723944881965 37.0 35.0 39.0 31.0 41.0 20 36.034287952563076 37.0 35.0 39.0 32.0 41.0 21 36.29048586541493 37.0 35.0 39.0 32.0 41.0 22 36.72045621733855 38.0 35.0 40.0 33.0 41.0 23 36.91517656687377 38.0 35.0 40.0 33.0 41.0 24 36.80705025524096 38.0 35.0 40.0 33.0 41.0 25 36.10840495896719 37.0 35.0 40.0 31.0 41.0 26 36.394612393596525 37.0 35.0 40.0 32.0 41.0 27 36.59214310053277 38.0 35.0 40.0 33.0 41.0 28 36.41859517159899 38.0 35.0 40.0 33.0 41.0 29 36.3549250518284 38.0 35.0 40.0 32.0 41.0 30 35.738292831279836 37.0 35.0 40.0 30.0 41.0 31 35.59418916810236 38.0 35.0 40.0 30.0 41.0 32 35.01090864507336 38.0 35.0 40.0 24.0 41.0 33 34.29403662859017 38.0 34.0 40.0 18.0 41.0 34 33.7549256887366 38.0 34.0 40.0 15.0 41.0 35 33.37836327332597 38.0 33.0 40.0 12.0 41.0 36 33.04682867488066 38.0 33.0 40.0 10.0 41.0 37 32.99161032682944 38.0 33.0 40.0 10.0 41.0 38 32.67513064579306 38.0 32.0 40.0 10.0 41.0 39 32.5990089708519 38.0 32.0 40.0 10.0 41.0 40 32.396218994513035 37.0 31.0 40.0 10.0 41.0 41 32.27147574812829 37.0 31.0 40.0 10.0 41.0 42 32.39212685937385 38.0 31.0 40.0 8.0 41.0 43 32.37131906871284 38.0 31.0 40.0 8.0 41.0 44 32.36840043691902 38.0 31.0 40.0 8.0 41.0 45 32.37397816041807 38.0 31.0 40.0 8.0 41.0 46 32.20593471054115 37.0 31.0 40.0 8.0 41.0 47 32.03921762197588 37.0 30.0 40.0 8.0 41.0 48 32.114759710461534 37.0 31.0 40.0 8.0 41.0 49 32.13945104882857 37.0 31.0 40.0 8.0 41.0 50 32.06812051576826 36.0 31.0 40.0 8.0 41.0 51 31.20634710859603 35.0 28.0 39.0 8.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 7.0 10 23.0 11 12.0 12 15.0 13 18.0 14 27.0 15 35.0 16 87.0 17 166.0 18 375.0 19 830.0 20 1375.0 21 2269.0 22 3248.0 23 4867.0 24 7746.0 25 13738.0 26 21594.0 27 26189.0 28 24789.0 29 20965.0 30 18825.0 31 19408.0 32 22508.0 33 28736.0 34 37676.0 35 54337.0 36 70561.0 37 102464.0 38 114202.0 39 30940.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.80278456261922 14.371355690933928 16.65578615170516 32.17007359474169 2 47.79375001990338 24.599145906113364 15.73736453758873 11.869739536394526 3 22.761824996735847 22.8710547518128 42.55836467452399 11.808755576927364 4 19.896693491116725 17.693787279032662 49.29987866898926 13.109640560861354 5 22.88379291567017 20.752857329380255 41.77687832187429 14.58647143307528 6 16.75036701834614 30.632417990108816 42.43161994414315 10.185595047401891 7 51.41632459389142 5.700328326173424 39.09963473315139 3.7837123467837728 8 49.80239923316254 10.757697831646057 34.14369285739307 5.296210077798335 9 44.57099456398858 8.151628733476212 35.18137553062414 12.096001171911075 10 26.4775473939309 19.44894703153014 41.62035813347685 12.453147441062109 11 21.666502132050176 18.985596321218278 45.058070104484784 14.289831442246758 12 18.378304359318125 17.35208603355869 48.5763509618906 15.693258645232582 13 17.354792893378384 19.312967132352707 51.29674508068035 12.035494893588563 14 14.038093479015467 23.70906670657958 46.911154491635806 15.34168532276915 15 12.952483464271042 19.468691185509066 53.581493995548016 13.99733135467188 16 13.524745475563424 20.69553559202209 47.057484148947346 18.722234783467137 17 13.561208469605148 21.242480502647947 48.75595907227952 16.44035195546738 18 13.400866832050495 20.686778104370145 49.61912890066461 16.29322616291475 19 14.834387947149358 21.02449867363869 47.525770897753944 16.615342481458008 20 15.056191225315827 21.68465401554693 50.67050510004235 12.588649659094889 21 14.442848635583424 24.629717499371054 47.492810898772994 13.434622966272528 22 12.932102402099249 20.32692497539942 47.87415967925304 18.866812943248295 23 13.754669333188968 22.806408570236645 48.077014938681664 15.361907157892727 24 14.473101774744679 20.543632988022942 47.00239159026422 17.980873646968156 25 12.656639608683607 25.98951649114538 45.531292891786116 15.822551008384897 26 13.657063152631862 21.087711811780892 48.27764101943525 16.977584016151994 27 16.748137839671102 21.99562444071499 45.55867994407946 15.697557775534445 28 12.141221653604742 22.486362203320205 48.73462264781843 16.637793495256624 29 18.52479324367789 19.8156469235742 45.09023396822465 16.569325864523258 30 16.233356792785102 23.248582083135627 46.40226484553384 14.115796278545428 31 17.26451115703927 23.249855899521364 43.47774165092972 16.00789129250964 32 19.554036883353447 24.32272775040842 41.73945996554327 14.383775400694867 33 15.205546196543498 22.530468095676348 42.51728409608397 19.74670161169618 34 18.333720785817327 23.45796565154116 41.98594343618339 16.22237012645812 35 19.090845400089805 24.801841938493776 38.437568666664546 17.669743994751876 36 18.424002522156442 26.892015400440105 37.38682937547967 17.297152701923782 37 19.862618902798257 26.327873968606795 38.90123783107284 14.908269297522109 38 16.542575720422782 28.3193266606585 37.43603053337877 17.702067085539955 39 20.356063525223156 23.263230971571602 39.87777731778853 16.502928185416714 40 17.11276778008834 25.922959584990622 40.896352745233536 16.067919889687502 41 16.177786552957325 26.90825655935825 37.15388020393801 19.760076683746423 42 16.795587500039808 26.414652709885132 38.84805599696832 17.941703793106743 43 19.746064703503315 23.69298477470965 36.16715018613642 20.393800335650617 44 18.28085740580924 23.856033272083994 38.35047147128977 19.512637850816994 45 17.010862469229373 23.70747443609741 38.56415416999717 20.717508924676054 46 19.61565775101348 25.190355936143582 37.99698742424773 17.196998888595203 47 15.270988513360741 22.53827022103899 44.77337214227255 17.417369123327717 48 16.951630007292597 24.44421798819809 39.43544457784133 19.168707426667982 49 16.587796202116444 22.1462532283284 42.74306805045587 18.522882519099284 50 16.812465567150824 21.65774464439823 40.651143090979154 20.878646697471794 51 16.95417764006407 20.513857530006337 38.575936971565234 23.956027858364358 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 601.0 1 1439.5 2 2278.0 3 31979.5 4 61681.0 5 39586.5 6 17492.0 7 16315.0 8 15138.0 9 14252.0 10 13366.0 11 12734.5 12 12103.0 13 11393.0 14 10683.0 15 9842.5 16 9002.0 17 8152.0 18 7302.0 19 6754.5 20 6207.0 21 6149.0 22 6091.0 23 6038.0 24 5985.0 25 6503.0 26 7733.0 27 8445.0 28 9776.5 29 11108.0 30 12183.0 31 13258.0 32 13778.0 33 14298.0 34 14870.5 35 15443.0 36 16470.0 37 17497.0 38 18711.0 39 19925.0 40 21950.0 41 23975.0 42 26556.5 43 29138.0 44 30766.0 45 32394.0 46 56492.5 47 80591.0 48 66085.5 49 51580.0 50 48758.0 51 45936.0 52 38353.5 53 30771.0 54 25840.0 55 20909.0 56 17222.0 57 13535.0 58 10904.0 59 8273.0 60 7034.5 61 5796.0 62 4829.0 63 3862.0 64 3118.5 65 2375.0 66 1864.5 67 1354.0 68 1136.5 69 919.0 70 779.0 71 639.0 72 550.0 73 461.0 74 361.5 75 222.5 76 183.0 77 131.5 78 80.0 79 58.0 80 36.0 81 29.5 82 23.0 83 16.0 84 9.0 85 7.5 86 6.0 87 3.0 88 0.0 89 0.5 90 1.0 91 1.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 628034.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.52120353225027 #Duplication Level Percentage of deduplicated Percentage of total 1 78.77232295301589 31.919493310873065 2 9.765748592783705 7.914397727459503 3 3.5198192654843945 4.278819385602865 4 1.7747642936783659 2.8766234066364578 5 1.0198592367531623 2.066296185336015 6 0.7238461134989127 1.759866941467066 7 0.5311378006230283 1.5065640045902244 8 0.43884202848647935 1.422592572384496 9 0.3607353532278811 1.3155687602482646 >10 2.9058331468740937 21.893687349533096 >50 0.12314864825559046 3.3720173444779844 >100 0.0521013511483915 3.597852778180784 >500 0.00631531529071412 1.624671639064699 >1k 0.003947072056696326 3.5340366742246094 >5k 7.89414411339265E-4 2.9305826385688594 >10k+ 7.89414411339265E-4 7.986929281352024 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 38336 6.104128120452077 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCG 11601 1.84719298636698 No Hit GAATCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTC 9481 1.5096316441466544 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGC 8842 1.4078855603359053 No Hit GCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 3772 0.6006044258750323 No Hit GAATGACTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCT 2932 0.4668537053726391 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGAGTTACT 2835 0.451408681695577 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGAGTTACTCGTA 2692 0.4286392138005267 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCC 2397 0.381667234576472 No Hit GAACTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCT 2053 0.32689312998977765 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTC 1909 0.3039644350465102 No Hit CTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGCT 1245 0.19823767503033274 TruSeq Adapter, Index 27 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 1181 0.1880471439444361 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 1080 0.17196521207450552 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGC 987 0.157157096590312 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 758 0.12069410254858814 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGAGTTACTCGT 748 0.11910183206641678 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 728 0.11591729110207408 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 685 0.10907052802873729 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 679 0.1081151657394345 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGGAGTTAC 648 0.10317912724470331 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.20635825448940662 0.0 2 0.0 0.0 0.0 1.1942028616285105 0.0 3 0.0 0.0 0.0 1.451354544499183 0.0 4 0.0 0.0 0.0 2.1080068913466468 0.0 5 0.0 0.0 0.0 4.4960941605072335 0.0 6 0.0 0.0 0.0 5.087622644633889 0.0 7 0.0 0.0 0.0 6.087409280389278 0.0 8 0.0 0.0 0.0 7.167924029590755 0.0 9 0.0 0.0 0.0 7.550228172360095 0.0 10 0.0 0.0 0.0 10.366954655321209 0.0 11 0.0 0.0 0.0 11.903654897664776 0.0 12 0.0 0.0 0.0 14.590133655184273 0.0 13 0.0 0.0 0.0 15.171790062321467 0.0 14 0.0 0.0 0.0 15.448048990978196 0.0 15 0.0 0.0 0.0 16.25867389345163 0.0 16 0.0 0.0 0.0 17.105124881773918 0.0 17 0.0 0.0 0.0 17.968135483110785 0.0 18 0.0 0.0 0.0 18.896110720120248 0.0 19 0.0 0.0 0.0 19.9224882729279 0.0 20 0.0 0.0 0.0 20.550161296999843 0.0 21 0.0 0.0 0.0 21.1639815678769 0.0 22 0.0 0.0 0.0 21.85518618418748 0.0 23 0.0 0.0 0.0 22.491775922959587 0.0 24 0.0 0.0 0.0 23.04333841798374 0.0 25 0.0 0.0 0.0 23.51894961100832 0.0 26 0.0 0.0 0.0 23.97019906565568 0.0 27 0.0 0.0 0.0 24.446924848017783 0.0 28 0.0 0.0 0.0 24.919192273029804 0.0 29 0.0 0.0 0.0 25.40069486683842 0.0 30 0.0 0.0 0.0 25.950983545476838 0.0 31 0.0 0.0 0.0 26.434078409767626 0.0 32 0.0 0.0 0.0 26.931026027253303 0.0 33 0.0 0.0 0.0 27.411573258772613 0.0 34 0.0 0.0 0.0 27.90740628692077 0.0 35 0.0 0.0 0.0 28.419480473987075 0.0 36 0.0 0.0 0.0 28.89509166701166 0.0 37 0.0 0.0 0.0 29.3730912657595 0.0 38 0.0 0.0 0.0 29.85252390794129 0.0 39 0.0 0.0 0.0 30.35329297458418 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTCGAC 20 7.0308393E-4 45.000004 23 CGGCGAA 20 7.0308393E-4 45.000004 31 GCGAACC 20 7.0308393E-4 45.000004 33 CAATTCG 20 7.0308393E-4 45.000004 24 CCGCTCC 20 7.0308393E-4 45.000004 35 GCGTTAG 20 7.0308393E-4 45.000004 1 TCGGCGT 20 7.0308393E-4 45.000004 4 ACGATAG 20 7.0308393E-4 45.000004 1 CGCTCCT 20 7.0308393E-4 45.000004 36 GACGGTA 20 7.0308393E-4 45.000004 4 TCCGTAA 25 3.8887767E-5 45.000004 22 CGGTCTA 25 3.8887767E-5 45.000004 31 CGGTAGC 25 3.8887767E-5 45.000004 12 CCTATCG 20 7.0308393E-4 45.000004 11 GGCGAAC 20 7.0308393E-4 45.000004 32 TCGCGAG 20 7.0308393E-4 45.000004 1 GTACGTA 25 3.8887767E-5 45.000004 39 AACACGT 20 7.0308393E-4 45.000004 41 CGGACGG 50 2.1827873E-11 45.000004 2 CGTTTGG 30 2.1639225E-6 44.999996 2 >>END_MODULE