SRR3552160_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552160_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	835649
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	42471	5.082397035118811	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCG	7469	0.8937963187893482	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTC	6718	0.8039260502914501	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGC	5521	0.6606840910477964	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCC	3508	0.41979347788365684	No Hit
GCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC	3234	0.3870045916407487	Illumina PCR Primer Index 2 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGCT	1786	0.2137260979191024	TruSeq Adapter, Index 10 (95% over 24bp)
GAACTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCT	1690	0.20223802098728055	TruSeq Adapter, Index 10 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGATTACCTCGTA	1612	0.19290395848017527	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCT	1600	0.19146794886369756	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTC	1435	0.17172281663712874	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGC	1393	0.1666967829794567	No Hit
CCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC	1345	0.16095274451354574	RNA PCR Primer, Index 10 (95% over 23bp)
CGTTTTTTTCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCG	864	0.10339269238639667	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTGCGT	20	7.03218E-4	45.0	12
CGACAAC	20	7.03218E-4	45.0	29
TCGATAG	20	7.03218E-4	45.0	1
AGTTCGT	20	7.03218E-4	45.0	28
CGTAAGG	95	0.0	45.0	2
ATAACGG	25	3.8898892E-5	45.0	2
TATCGAG	25	3.8898892E-5	45.0	1
TACCGTA	20	7.03218E-4	45.0	28
AGCGACT	30	2.1647884E-6	44.999996	19
CGTTTTT	21280	0.0	44.080124	1
CCTATGC	80	0.0	42.1875	35
CGAATAT	100	0.0	40.5	14
GCTACGA	100	0.0	40.5	10
ACGGGCG	95	0.0	40.263157	5
AACGAGC	45	1.9272193E-8	40.0	15
CACAACG	45	1.9272193E-8	40.0	12
GCGTAAG	90	0.0	40.0	1
TACGGCT	735	0.0	39.183674	7
AGCCGTA	35	6.2462404E-6	38.57143	13
GTTTTTT	25370	0.0	38.224277	2