##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552157_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 831399 Sequences flagged as poor quality 0 Sequence length 51 %GC 33 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.47309174054816 31.0 28.0 33.0 25.0 33.0 2 29.409209056060927 31.0 30.0 33.0 16.0 34.0 3 29.21704139648953 31.0 28.0 34.0 16.0 34.0 4 33.551543843569696 35.0 33.0 35.0 28.0 37.0 5 34.570282138900815 35.0 35.0 37.0 32.0 37.0 6 34.11759215490998 35.0 35.0 37.0 30.0 37.0 7 34.96315246951223 35.0 35.0 37.0 32.0 37.0 8 34.43569934532036 35.0 35.0 37.0 31.0 37.0 9 36.64438374354552 39.0 37.0 39.0 32.0 39.0 10 36.449450865348645 38.0 35.0 39.0 32.0 39.0 11 36.865331808193176 39.0 37.0 39.0 33.0 39.0 12 36.92927703786028 39.0 37.0 39.0 33.0 39.0 13 36.86115571464483 39.0 37.0 39.0 33.0 39.0 14 37.823431348846945 40.0 37.0 41.0 32.0 41.0 15 38.039843685162 40.0 37.0 41.0 33.0 41.0 16 37.7580884749681 40.0 36.0 41.0 32.0 41.0 17 37.46064765533757 39.0 36.0 41.0 32.0 41.0 18 37.0094852170859 39.0 36.0 39.0 32.0 40.0 19 36.00194611732754 37.0 35.0 39.0 31.0 40.0 20 35.342521460814844 35.0 35.0 39.0 31.0 40.0 21 35.6397012745986 35.0 35.0 39.0 31.0 40.0 22 36.03077583687255 35.0 35.0 39.0 32.0 41.0 23 36.18835721476692 35.0 35.0 40.0 33.0 41.0 24 36.01776643945927 35.0 35.0 40.0 32.0 41.0 25 35.476500452851155 35.0 35.0 39.0 31.0 41.0 26 35.62809673814859 35.0 35.0 40.0 31.0 41.0 27 35.80904716026841 35.0 35.0 40.0 32.0 41.0 28 35.57506564236907 35.0 35.0 40.0 31.0 41.0 29 35.48182521268368 35.0 35.0 40.0 31.0 41.0 30 34.819070025342825 35.0 35.0 40.0 27.0 41.0 31 34.47495366244126 35.0 35.0 40.0 24.0 41.0 32 33.448055626720745 35.0 33.0 40.0 18.0 41.0 33 32.35277887031377 35.0 32.0 40.0 12.0 41.0 34 31.32018802043303 35.0 28.0 40.0 8.0 41.0 35 30.743442077750874 35.0 24.0 40.0 7.0 41.0 36 30.226792430589885 35.0 22.0 40.0 7.0 41.0 37 30.23573278293575 35.0 22.0 40.0 7.0 41.0 38 30.03022736375675 35.0 21.0 40.0 7.0 41.0 39 29.82507195702665 35.0 21.0 40.0 7.0 41.0 40 29.6796736584961 35.0 21.0 40.0 7.0 41.0 41 29.323210636529513 35.0 20.0 40.0 7.0 41.0 42 29.441209335108653 35.0 18.0 40.0 7.0 41.0 43 29.361393266049152 35.0 18.0 40.0 7.0 41.0 44 29.377475796819578 35.0 18.0 40.0 7.0 41.0 45 29.409160944384105 35.0 20.0 40.0 7.0 41.0 46 29.23723627283651 35.0 20.0 40.0 7.0 41.0 47 29.059325305900057 35.0 20.0 40.0 7.0 41.0 48 29.081732116589027 35.0 20.0 40.0 7.0 41.0 49 29.11567249900469 35.0 20.0 40.0 7.0 41.0 50 29.021612968021373 35.0 20.0 40.0 7.0 41.0 51 28.28385408209536 34.0 18.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 11.0 9 17.0 10 14.0 11 24.0 12 21.0 13 28.0 14 45.0 15 93.0 16 158.0 17 340.0 18 751.0 19 1602.0 20 3207.0 21 5002.0 22 7147.0 23 10481.0 24 16427.0 25 29359.0 26 43510.0 27 49093.0 28 44662.0 29 36934.0 30 30938.0 31 29563.0 32 32244.0 33 38974.0 34 47357.0 35 71449.0 36 80035.0 37 104619.0 38 115397.0 39 31897.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.168671119402354 10.7741289080213 13.00627015428212 43.05092981829423 2 55.46855360663171 21.763076453062848 12.558109884664281 10.210260055641154 3 18.286526685742945 21.433752025200896 50.59856939928963 9.681151889766525 4 15.615967784421198 13.875648154496217 58.94558449071986 11.562799570362726 5 20.749724259952202 15.595039205002653 51.02363606403183 12.631600471013316 6 14.525516629199696 24.274505983288407 52.240620929301095 8.959356458210799 7 43.610709178144305 3.582515735525301 49.79714914258978 3.0096259437406108 8 42.125742272964004 8.9123272941151 44.503661900002285 4.458268532918611 9 38.58339978758695 4.649753006679103 44.912851711392484 11.853995494341465 10 23.511334509663833 14.984983142871233 50.273575022341866 11.230107325123075 11 19.276664994785897 15.172378124101666 53.27009053414786 12.280866346964574 12 14.883226946387957 13.97331485844943 56.0096896917124 15.13376850345021 13 15.57495257992853 15.303843281023912 58.75037136200548 10.37083277704207 14 12.76210339439908 19.62956414429173 54.818805411120294 12.789527050188898 15 10.948052619740944 15.233239395284334 60.20743349462773 13.611274490346995 16 12.783392811393806 17.168291037155445 53.62262884607751 16.42568730537323 17 12.948776700477147 17.4624939409357 55.65558775028596 13.933141608301188 18 14.11813100569041 15.217242262740271 55.69636239639452 14.968264335174808 19 12.754646084491322 17.252727029981994 53.78837357273704 16.204253312789646 20 14.725300367212373 17.35243848020024 56.96951764435608 10.952743508231306 21 12.971629746968663 20.491123997021887 55.05419178998291 11.483054466026541 22 12.818875173051689 14.66564188795031 56.4341549604943 16.081327978503705 23 13.327776434660132 19.17057874738844 55.35789674993595 12.143748068015478 24 13.547045401786628 17.344740611908364 53.965304264258194 15.142909722046817 25 11.716275819432067 21.978857323619586 52.962777198432995 13.342089658515347 26 12.290969799097667 15.848828300250542 56.26299767019205 15.597204230459743 27 14.97030908143984 16.692225994979545 52.94184861901445 15.39561630456616 28 11.064122040079432 17.867473980603776 55.9892422290621 15.079161750254691 29 13.737447362818575 15.532253466747012 55.48707660220905 15.243222568225365 30 13.022748403594422 18.345222931468523 53.763355500788435 14.868673164148621 31 16.549695152387724 16.68921901517803 50.515817315151935 16.245268517282316 32 16.14772209252116 18.444092427342348 49.71487817522032 15.693307304916171 33 14.522990766166425 18.463096539687925 48.508237320468275 18.50567537367738 34 16.066172800304066 22.00086841576668 46.838521576282865 15.094437207646388 35 17.142310731670353 21.452515579162352 43.10060512461526 18.30456856455204 36 18.090832440260332 23.14640744095194 43.802915327057164 14.959844791730564 37 17.04548598206156 22.58121551745913 41.20488477854797 19.168413721931348 38 19.57002594422173 22.71941630913677 40.40791485195436 17.302642894687146 39 18.492564941742774 23.509530321782922 40.10565324230604 17.892251494168264 40 20.2379362977343 21.846670491544977 41.96577094752339 15.949622263197332 41 17.96850850193469 25.06630390462341 40.05633877356119 16.908848819880706 42 19.997017076036897 21.997741156773102 41.56788738018689 16.43735438700311 43 19.25898395355299 21.857014502062185 40.624176839279336 18.25982470510549 44 18.90764843354394 21.908253437880006 39.73771919379263 19.44637893478342 45 18.54885560362714 20.8828733255633 39.994394989649976 20.573876081159586 46 19.748881102815858 22.49509561594373 39.89336046831906 17.862662812921354 47 15.440480443204768 22.01085158870771 45.56115655659918 16.987511411488345 48 17.53141391798643 22.990525608041384 40.90623154466147 18.571828929310715 49 17.297711447812663 20.298075893764604 44.16700044142463 18.237212216998095 50 16.24045734959989 20.59083544724013 43.339720158431746 19.828987044728223 51 16.56665451846827 19.70401696417725 40.87291420846068 22.856414308893804 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 652.0 1 1511.5 2 2371.0 3 51641.5 4 100912.0 5 64845.0 6 28778.0 7 27401.0 8 26024.0 9 25525.5 10 25027.0 11 24021.0 12 23015.0 13 21792.5 14 20570.0 15 19184.0 16 17798.0 17 16649.0 18 15500.0 19 14319.0 20 13138.0 21 12066.5 22 10995.0 23 10530.0 24 10065.0 25 10109.0 26 10366.0 27 10579.0 28 10798.5 29 11018.0 30 12101.0 31 13184.0 32 14289.5 33 15395.0 34 16258.5 35 17122.0 36 17718.5 37 18315.0 38 19742.5 39 21170.0 40 22245.0 41 23320.0 42 24217.0 43 25114.0 44 27729.5 45 30345.0 46 62119.0 47 93893.0 48 71166.0 49 48439.0 50 47644.0 51 46849.0 52 41794.5 53 36740.0 54 33268.5 55 29797.0 56 26294.5 57 22792.0 58 19906.0 59 17020.0 60 14630.0 61 12240.0 62 10835.5 63 9431.0 64 8311.0 65 7191.0 66 6164.0 67 5137.0 68 4363.5 69 3590.0 70 3056.5 71 2523.0 72 2250.0 73 1977.0 74 1687.5 75 1147.5 76 897.0 77 705.0 78 513.0 79 374.0 80 235.0 81 176.5 82 118.0 83 77.0 84 36.0 85 23.0 86 10.0 87 9.5 88 9.0 89 5.0 90 1.0 91 1.0 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 831399.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.27505488491719 #Duplication Level Percentage of deduplicated Percentage of total 1 79.31780614970275 35.118002206293106 2 8.635465853020373 7.6467144919861045 3 3.670951064481255 4.875946795792582 4 2.2030346394024014 3.9015791829166027 5 1.4409269216685117 3.189855927101406 6 0.9946113216465077 2.642188251303548 7 0.7426990312820451 2.3018128261091158 8 0.5689097535521624 2.015080845046936 9 0.44450151622391876 1.771229612451862 >10 1.8498015293262158 12.752708405999346 >50 0.07031554932878094 2.1752434633499096 >100 0.05246191008897124 4.281042264441323 >500 0.004669384667576152 1.360574407135818 >1k 0.0024720271769520805 2.712514493311085 >5k 2.746696863280089E-4 0.6315215316639526 >10k+ 0.0010986787453120357 12.623985295097235 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 63529 7.641216792418562 No Hit GAATCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC 16011 1.925790144082444 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCG 14221 1.7104903902939501 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGC 10046 1.2083247634408991 No Hit GAACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCT 5193 0.6246098443707534 No Hit GCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC 3551 0.42711141100723 Illumina Single End Adapter 1 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCT 3416 0.4108737200790475 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCGCTAGTT 3068 0.3690165612419548 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTA 3020 0.3632431600230455 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTC 3005 0.3614389721421363 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCC 2236 0.26894427344752636 No Hit GAATGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTT 1712 0.2059179768077662 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGC 1164 0.14000497955855132 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 1133 0.13627632460467237 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 906 0.10897294800691365 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGT 895 0.10764987689424693 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 873 0.10500373466891348 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07890314999176087 0.0 2 0.0 0.0 0.0 0.6425314439877845 0.0 3 0.0 0.0 0.0 0.8140495718662158 0.0 4 0.0 0.0 0.0 1.6259341182753406 0.0 5 0.0 0.0 0.0 4.0991148654256255 0.0 6 0.0 0.0 0.0 4.724566664140804 0.0 7 0.0 0.0 0.0 5.515642910323443 0.0 8 0.0 0.0 0.0 6.368542661225236 0.0 9 0.0 0.0 0.0 6.6643091945022785 0.0 10 0.0 0.0 0.0 9.0421085423485 0.0 11 0.0 0.0 0.0 9.939992711080961 0.0 12 0.0 0.0 0.0 11.941197908585409 0.0 13 0.0 0.0 0.0 12.342088455723426 0.0 14 0.0 0.0 0.0 12.549209224451797 0.0 15 0.0 0.0 0.0 13.118851478050852 0.0 16 0.0 0.0 0.0 13.569176773125779 0.0 17 0.0 0.0 0.0 13.975840721482706 0.0 18 0.0 0.0 0.0 14.428571600398845 0.0 19 0.0 0.0 0.0 15.103458147050935 0.0 20 0.0 0.0 0.0 15.44493077331101 0.0 21 0.0 0.0 0.0 15.760904210854235 0.0 22 0.0 0.0 0.0 16.140625620189585 0.0 23 0.0 0.0 0.0 16.46646195148178 0.0 24 0.0 0.0 0.0 16.729873382094517 0.0 25 0.0 0.0 0.0 16.96489892338095 0.0 26 0.0 0.0 0.0 17.216883830747932 0.0 27 0.0 0.0 0.0 17.49593155632855 0.0 28 0.0 0.0 0.0 17.748277301271713 0.0 29 0.0 0.0 0.0 18.01349291976536 0.0 30 0.0 0.0 0.0 18.353642474912768 0.0 31 0.0 0.0 0.0 18.62559372816181 0.0 32 1.2027919206061109E-4 0.0 0.0 18.918112723253216 0.0 33 1.2027919206061109E-4 0.0 0.0 19.20281357086068 0.0 34 1.2027919206061109E-4 0.0 0.0 19.46826974773845 0.0 35 1.2027919206061109E-4 0.0 0.0 19.761991534750464 0.0 36 1.2027919206061109E-4 0.0 0.0 20.010127507971504 0.0 37 1.2027919206061109E-4 0.0 0.0 20.27113335474303 0.0 38 1.2027919206061109E-4 0.0 0.0 20.569305471861284 0.0 39 2.4055838412122217E-4 0.0 0.0 20.98583231396718 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGAAC 25 3.8898703E-5 45.000004 13 CGGCGAA 70 0.0 45.0 31 CACGGCT 20 7.0321606E-4 45.0 18 TCTACGG 20 7.0321606E-4 45.0 2 CACGTTG 20 7.0321606E-4 45.0 1 CGTCACG 20 7.0321606E-4 45.0 36 TATCGAG 20 7.0321606E-4 45.0 1 CGTGCGG 30 2.1647757E-6 44.999996 2 GAGTACG 30 2.1647757E-6 44.999996 1 TTACCGG 30 2.1647757E-6 44.999996 2 CGTTTTT 30905 0.0 44.060837 1 CACGACC 180 0.0 41.25 27 TACGGCT 1235 0.0 41.17409 7 CCGATGA 885 0.0 40.9322 18 ACCCTCG 55 6.002665E-11 40.909092 39 AGTACGG 55 6.002665E-11 40.909092 2 CGATGAA 890 0.0 40.702248 19 ACACGAC 185 0.0 40.135136 26 GAATCTG 1930 0.0 39.753887 1 GTTTTTT 34985 0.0 39.436905 2 >>END_MODULE