SRR3552155_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552155_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	642515
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	44384	6.907854291339502	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCG	13697	2.1317790246142114	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTC	13027	2.027501303471514	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGC	11416	1.7767678575597456	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTAGGAATTCGTA	3650	0.5680801226430512	No Hit
GCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC	3488	0.5428667035010856	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCT	3401	0.5293261635915114	No Hit
GAACTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCT	3197	0.4975759320794067	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTAGGAATT	3172	0.49368497233527625	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTC	2806	0.43672132168120587	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCC	2495	0.3883177824642226	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGC	1003	0.15610530493451513	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTAGGAATTCGT	953	0.14832338544625417	No Hit
CTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGCT	907	0.14116401951705407	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATG	906	0.14100838112728886	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	759	0.11812953783180159	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTT	757	0.11781826105227114	No Hit
CCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC	698	0.10863559605612322	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCTAGGAAT	684	0.10645665859941014	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAA	80	0.0	45.0	31
CGTATGG	20	7.030962E-4	45.0	2
CCGATTT	20	7.030962E-4	45.0	11
TGCGACG	25	3.8888782E-5	45.0	1
CTCGAAT	35	1.2108103E-7	45.0	43
CATCGAA	25	3.8888782E-5	45.0	42
GCTACGA	20	7.030962E-4	45.0	10
CGACTGG	35	1.2108103E-7	45.0	2
TTCGCAG	20	7.030962E-4	45.0	1
CAATCGA	20	7.030962E-4	45.0	41
TCGAATA	35	1.2108103E-7	45.0	44
TCGCGCG	20	7.030962E-4	45.0	1
ACGACTG	20	7.030962E-4	45.0	1
GTACGAG	25	3.8888782E-5	45.0	1
CGGGTCA	30	2.1640008E-6	44.999996	6
CGTGCGG	30	2.1640008E-6	44.999996	2
GCGCCTA	30	2.1640008E-6	44.999996	42
CGTTTTT	18375	0.0	44.130615	1
CCGATGA	960	0.0	42.656246	18
CGATGAA	960	0.0	42.656246	19

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content