##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552155_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 642515 Sequences flagged as poor quality 0 Sequence length 51 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.21048068916679 31.0 28.0 33.0 25.0 33.0 2 29.001288685867255 31.0 28.0 33.0 16.0 34.0 3 28.779925760488084 31.0 28.0 33.0 16.0 34.0 4 33.47173529022669 35.0 32.0 35.0 28.0 37.0 5 34.49671058263231 35.0 35.0 35.0 32.0 37.0 6 33.87128705166416 35.0 33.0 37.0 28.0 37.0 7 34.808152338855905 35.0 35.0 37.0 32.0 37.0 8 34.02654568375836 35.0 35.0 37.0 28.0 37.0 9 36.30287075009922 39.0 35.0 39.0 31.0 39.0 10 36.20069570360225 37.0 35.0 39.0 32.0 39.0 11 36.72506011532805 39.0 35.0 39.0 32.0 39.0 12 36.80738504159436 39.0 35.0 39.0 33.0 39.0 13 36.742360878734345 39.0 35.0 39.0 32.0 39.0 14 37.658565169684756 39.0 37.0 41.0 32.0 41.0 15 37.881722605697924 40.0 37.0 41.0 32.0 41.0 16 37.537847365431155 39.0 36.0 41.0 32.0 41.0 17 37.239524369080875 39.0 36.0 41.0 32.0 41.0 18 36.93707695540182 39.0 36.0 39.0 32.0 41.0 19 36.06276273705672 37.0 35.0 39.0 31.0 41.0 20 35.56354637634919 35.0 35.0 39.0 30.0 40.0 21 35.93120004980428 36.0 35.0 39.0 31.0 40.0 22 36.32924056247714 37.0 35.0 40.0 32.0 41.0 23 36.46008731313666 37.0 35.0 40.0 33.0 41.0 24 36.33997649860314 37.0 35.0 40.0 32.0 41.0 25 35.772360178361595 36.0 35.0 40.0 31.0 41.0 26 35.957557411111026 36.0 35.0 40.0 31.0 41.0 27 36.10542477607527 37.0 35.0 40.0 32.0 41.0 28 35.92918920180852 37.0 35.0 40.0 31.0 41.0 29 35.91009081500043 37.0 35.0 40.0 31.0 41.0 30 35.318504626351135 36.0 35.0 40.0 29.0 41.0 31 35.060923091289695 36.0 35.0 40.0 27.0 41.0 32 34.30632592235201 37.0 34.0 40.0 21.0 41.0 33 33.55319019789421 37.0 33.0 40.0 15.0 41.0 34 32.76218765320654 37.0 33.0 40.0 11.0 41.0 35 32.26482338933722 37.0 31.0 40.0 9.0 41.0 36 31.926582258779952 37.0 31.0 40.0 8.0 41.0 37 31.837476167871568 37.0 30.0 40.0 7.0 41.0 38 31.67054776931278 36.0 30.0 40.0 8.0 41.0 39 31.527472510369407 36.0 29.0 40.0 7.0 41.0 40 31.361737858260117 36.0 27.0 40.0 8.0 41.0 41 31.136199154883542 35.0 26.0 40.0 7.0 41.0 42 31.232808572562508 36.0 27.0 40.0 7.0 41.0 43 31.230766596888788 36.0 26.0 40.0 7.0 41.0 44 31.278542913395018 37.0 26.0 40.0 7.0 41.0 45 31.274757787755927 36.0 26.0 40.0 7.0 41.0 46 31.111967813980996 36.0 25.0 40.0 7.0 41.0 47 30.95786557512276 35.0 25.0 40.0 7.0 41.0 48 31.05251550547458 35.0 25.0 40.0 7.0 41.0 49 31.10733912826938 36.0 26.0 40.0 7.0 41.0 50 30.989091305261354 35.0 25.0 40.0 7.0 41.0 51 30.366050598040513 35.0 24.0 40.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 7.0 9 16.0 10 16.0 11 11.0 12 21.0 13 21.0 14 39.0 15 44.0 16 79.0 17 213.0 18 590.0 19 1398.0 20 2351.0 21 3576.0 22 5121.0 23 6866.0 24 10300.0 25 16792.0 26 25344.0 27 29643.0 28 28181.0 29 23761.0 30 21452.0 31 22109.0 32 24182.0 33 30317.0 34 38435.0 35 56640.0 36 67326.0 37 92377.0 38 105239.0 39 30046.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.75258165179023 11.975128985315518 14.765725313805902 35.50656404908835 2 49.61705174198268 25.60173692442978 13.966366543971736 10.814844789615808 3 20.239060566679377 24.85155988576142 44.30215636989019 10.607223177669004 4 17.66340085445476 15.538781195769749 54.67545504774207 12.122362902033416 5 23.65843598982125 18.353034559504447 44.6355338007673 13.352995649907006 6 15.356684279744442 29.20523256266391 45.810292366715174 9.627790790876478 7 46.5856828245255 4.835684770005369 45.04626351135771 3.5323688941114213 8 44.5030855310771 12.059484992568267 38.30260772122052 5.134821755134122 9 40.39890119296825 6.247791880345206 38.898547115631544 14.454759811054995 10 26.301954039983507 16.74373360933208 45.178089227488854 11.776223123195567 11 21.84338108837926 16.96831980576329 47.78721119351299 13.401087912344458 12 16.54436083204283 15.741578017633827 50.87009641798246 16.84396473234088 13 17.407375703290974 16.721321681205886 54.60183808938312 11.269464526120013 14 13.89788565247504 22.818922515427655 49.132860711423085 14.150331120674226 15 12.081585643914929 17.24566741632491 56.05441118106192 14.618335758698239 16 12.99175894726193 19.292623518517075 48.718706956257826 18.99691057796316 17 13.01230321471094 20.324350404270717 51.44907122790907 15.214275153109266 18 13.664583706216977 18.22074192820401 51.7366909721952 16.377983393383815 19 13.030979821482767 19.64218734192976 49.37908064403166 17.947752192555814 20 15.445242523520852 19.3117670404582 53.53680458821973 11.706185847801219 21 13.48310934375073 23.76489264842066 49.99182898453733 12.760169023291285 22 12.544609853466456 17.594141771009237 52.19208890064824 17.66915947487607 23 13.744737476946064 22.21706886220555 50.75756986218221 13.28062379866618 24 14.619269589036833 19.26647626903652 49.02406947697719 17.090184664949458 25 11.7402706551598 25.442051936530664 47.901761048380195 14.91591635992934 26 12.25014202003066 18.48517155241512 51.705718932631925 17.5589674949223 27 15.945931223395563 19.790510727376017 48.649136596032776 15.614421453195645 28 10.75741422379244 21.570235714341297 51.713656490509955 15.958693571356312 29 15.165560337112751 17.672583519450907 49.313401243550736 17.848454899885606 30 13.429258460891964 22.560251511637862 50.976553076581865 13.033936950888306 31 15.49349042434807 22.22827482626865 45.115211318023704 17.163023431359576 32 19.08718084402699 22.451771553971504 44.56238375757764 13.898663844423867 33 17.061702839622424 21.413040940678428 42.98856836027174 18.536687859427406 34 16.257363641315767 25.068208524314606 40.92729352622118 17.74713430814845 35 15.78157708380349 24.938561745640182 42.133491046901625 17.1463701236547 36 15.436215496914468 27.20636872290919 40.613215255674966 16.744200524501373 37 17.569083990257038 25.49948250235403 42.184384800354856 14.747048707034077 38 19.005159412620717 27.020536485529522 37.106526695874805 16.867777405974955 39 20.821615059570593 25.41574904866034 37.81156860151125 15.951067290257814 40 18.750535006964817 25.590842237146216 39.56608016933457 16.0925425865544 41 15.612398154128698 28.241675291627434 38.94648373967923 17.19944281456464 42 16.704045819941946 25.468666101180514 41.534127607915764 16.29316047096177 43 18.795358863217203 22.63231208609916 39.76000560298203 18.81232344770161 44 17.76954623627464 23.33470813910959 39.95548742052715 18.940258204088618 45 16.559457755850058 23.337042714956073 39.22756667159521 20.875932857598656 46 20.249488338793647 24.5885310070582 38.503848159186944 16.658132494961205 47 14.602149366162658 23.455950444736697 45.46928865473958 16.472611534361064 48 16.52101507357805 25.0221395609441 39.84622927091196 18.610616094565884 49 16.207714994980662 21.806339151615138 44.09749188734893 17.888453966055266 50 16.448487583947458 21.28915278242531 42.396364287215086 19.865995346412145 51 15.961183785592553 20.805273028645246 39.43409881481366 23.79944437094854 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 652.0 1 1558.0 2 2464.0 3 37235.0 4 72006.0 5 45422.5 6 18839.0 7 17749.5 8 16660.0 9 15967.5 10 15275.0 11 14545.0 12 13815.0 13 13130.5 14 12446.0 15 11519.5 16 10593.0 17 9838.5 18 9084.0 19 8310.0 20 7536.0 21 7262.5 22 6989.0 23 7027.0 24 7065.0 25 7198.0 26 8009.0 27 8687.0 28 9206.0 29 9725.0 30 11115.0 31 12505.0 32 13180.0 33 13855.0 34 14351.0 35 14847.0 36 16131.0 37 17415.0 38 18727.5 39 20040.0 40 22025.0 41 24010.0 42 25528.5 43 27047.0 44 56182.5 45 85318.0 46 65028.0 47 44738.0 48 43022.5 49 41307.0 50 36138.0 51 30969.0 52 27966.0 53 24963.0 54 22233.0 55 19503.0 56 16693.0 57 13883.0 58 12006.0 59 10129.0 60 8535.0 61 6941.0 62 5998.5 63 5056.0 64 4369.0 65 3682.0 66 2975.0 67 2268.0 68 1893.0 69 1518.0 70 1270.0 71 1022.0 72 930.0 73 838.0 74 723.0 75 507.5 76 407.0 77 321.5 78 236.0 79 179.5 80 123.0 81 97.0 82 71.0 83 49.0 84 27.0 85 21.5 86 16.0 87 9.0 88 2.0 89 2.5 90 3.0 91 1.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 642515.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.44661420462143 #Duplication Level Percentage of deduplicated Percentage of total 1 80.0057887456186 33.159690602760975 2 8.774941758482328 7.27383251463679 3 3.4075905767942505 4.236992760110842 4 1.775624787795731 2.9437454220772987 5 1.1346132368085178 2.3512938548729707 6 0.7735583545412263 1.9236824811259186 7 0.5793907943997112 1.680965071043578 8 0.4397004830544009 1.4579277029393152 9 0.38343064431015966 1.430271179005735 >10 2.5562545397167646 18.86347684861406 >50 0.10380395448928989 2.934496809183679 >100 0.05624286979406099 3.86098238845618 >500 0.004529627097508268 1.340447226560742 >1k 0.0030197513983388456 3.6314730418916827 >5k 0.0 0.0 >10k+ 0.0015098756991694228 12.910722096720198 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 44384 6.907854291339502 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCG 13697 2.1317790246142114 No Hit GAATCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTC 13027 2.027501303471514 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGC 11416 1.7767678575597456 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTAGGAATTCGTA 3650 0.5680801226430512 No Hit GCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC 3488 0.5428667035010856 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCT 3401 0.5293261635915114 No Hit GAACTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCT 3197 0.4975759320794067 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTAGGAATT 3172 0.49368497233527625 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTC 2806 0.43672132168120587 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCC 2495 0.3883177824642226 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGC 1003 0.15610530493451513 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTAGGAATTCGT 953 0.14832338544625417 No Hit CTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGCT 907 0.14116401951705407 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATG 906 0.14100838112728886 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 759 0.11812953783180159 No Hit GAATGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTT 757 0.11781826105227114 No Hit CCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC 698 0.10863559605612322 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCTAGGAAT 684 0.10645665859941014 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.14801210866672374 0.0 2 0.0 0.0 0.0 0.9335190618117865 0.0 3 0.0 0.0 0.0 1.1454985486720155 0.0 4 0.0 0.0 0.0 1.916064216399617 0.0 5 0.0 0.0 0.0 4.64098114440908 0.0 6 0.0 0.0 0.0 5.174665182914017 0.0 7 0.0 0.0 0.0 6.151762993860065 0.0 8 0.0 0.0 0.0 7.20123265604694 0.0 9 0.0 0.0 0.0 7.489630592281892 0.0 10 0.0 0.0 0.0 10.369407718107748 0.0 11 0.0 0.0 0.0 11.538252025244546 0.0 12 0.0 0.0 0.0 14.28464705104161 0.0 13 0.0 0.0 0.0 14.764791483467311 0.0 14 0.0 0.0 0.0 15.004630242095516 0.0 15 0.0 0.0 0.0 15.847256484284413 0.0 16 0.0 0.0 0.0 16.450043967845108 0.0 17 0.0 0.0 0.0 17.037578889208813 0.0 18 1.556383897652195E-4 0.0 0.0 17.637564881753732 0.0 19 1.556383897652195E-4 0.0 0.0 18.540267542392005 0.0 20 1.556383897652195E-4 0.0 0.0 19.015587184734986 0.0 21 1.556383897652195E-4 0.0 0.0 19.459467872345392 0.0 22 1.556383897652195E-4 0.0 0.0 19.956265612475974 0.0 23 1.556383897652195E-4 0.0 0.0 20.38224788526338 0.0 24 1.556383897652195E-4 0.0 0.0 20.763717578577932 0.0 25 1.556383897652195E-4 0.0 0.0 21.08184244725804 0.0 26 1.556383897652195E-4 0.0 0.0 21.42237924406434 0.0 27 1.556383897652195E-4 0.0 0.0 21.79809031695758 0.0 28 4.669151692956585E-4 0.0 0.0 22.13598126113787 0.0 29 4.669151692956585E-4 0.0 0.0 22.491459343361633 0.0 30 4.669151692956585E-4 0.0 0.0 22.907480759204066 0.0 31 6.22553559060878E-4 0.0 0.0 23.253309261262384 0.0 32 6.22553559060878E-4 0.0 0.0 23.605207660521543 0.0 33 6.22553559060878E-4 0.0 0.0 23.98340894765103 0.0 34 6.22553559060878E-4 0.0 0.0 24.347135864532344 0.0 35 6.22553559060878E-4 0.0 0.0 24.726115343610655 0.0 36 6.22553559060878E-4 0.0 0.0 25.08735204625573 0.0 37 6.22553559060878E-4 0.0 0.0 25.44998949440869 0.0 38 6.22553559060878E-4 0.0 0.0 25.84297642856587 0.0 39 6.22553559060878E-4 0.0 0.0 26.26195497381384 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGCGAA 80 0.0 45.0 31 CGTATGG 20 7.030962E-4 45.0 2 CCGATTT 20 7.030962E-4 45.0 11 TGCGACG 25 3.8888782E-5 45.0 1 CTCGAAT 35 1.2108103E-7 45.0 43 CATCGAA 25 3.8888782E-5 45.0 42 GCTACGA 20 7.030962E-4 45.0 10 CGACTGG 35 1.2108103E-7 45.0 2 TTCGCAG 20 7.030962E-4 45.0 1 CAATCGA 20 7.030962E-4 45.0 41 TCGAATA 35 1.2108103E-7 45.0 44 TCGCGCG 20 7.030962E-4 45.0 1 ACGACTG 20 7.030962E-4 45.0 1 GTACGAG 25 3.8888782E-5 45.0 1 CGGGTCA 30 2.1640008E-6 44.999996 6 CGTGCGG 30 2.1640008E-6 44.999996 2 GCGCCTA 30 2.1640008E-6 44.999996 42 CGTTTTT 18375 0.0 44.130615 1 CCGATGA 960 0.0 42.656246 18 CGATGAA 960 0.0 42.656246 19 >>END_MODULE