##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552154_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 666644 Sequences flagged as poor quality 0 Sequence length 51 %GC 33 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.721043015462527 31.0 30.0 33.0 28.0 34.0 2 30.7530271029215 31.0 30.0 33.0 26.0 34.0 3 30.376709308116475 31.0 30.0 34.0 25.0 34.0 4 34.49180372132653 35.0 35.0 37.0 32.0 37.0 5 35.1860693263571 35.0 35.0 37.0 33.0 37.0 6 35.14252884598076 36.0 35.0 37.0 33.0 37.0 7 35.6079601706458 37.0 35.0 37.0 35.0 37.0 8 35.111258782798615 37.0 35.0 37.0 32.0 37.0 9 37.1173024882846 39.0 37.0 39.0 33.0 39.0 10 36.81701327845147 39.0 37.0 39.0 32.0 39.0 11 37.06955436484841 39.0 37.0 39.0 33.0 39.0 12 37.30696443679085 39.0 37.0 39.0 34.0 39.0 13 37.15626331295264 39.0 37.0 39.0 33.0 39.0 14 38.39071228421766 40.0 38.0 41.0 34.0 41.0 15 38.38299452181374 40.0 38.0 41.0 33.0 41.0 16 38.34897036499241 40.0 37.0 41.0 34.0 41.0 17 37.92981861383287 40.0 37.0 41.0 33.0 41.0 18 37.5139309736531 39.0 37.0 40.0 33.0 41.0 19 36.72549066668267 37.0 36.0 39.0 32.0 41.0 20 36.06108507689262 36.0 35.0 40.0 32.0 41.0 21 36.33351983967455 37.0 35.0 40.0 33.0 41.0 22 36.634725580669745 37.0 35.0 40.0 33.0 41.0 23 36.67400141604814 37.0 35.0 40.0 33.0 41.0 24 36.50346661786501 37.0 35.0 40.0 33.0 41.0 25 36.11321934945788 36.0 35.0 40.0 32.0 41.0 26 36.23381144958929 37.0 35.0 40.0 33.0 41.0 27 36.44840274569335 37.0 35.0 40.0 33.0 41.0 28 36.237782084590876 37.0 35.0 40.0 33.0 41.0 29 36.16983427436533 37.0 35.0 40.0 33.0 41.0 30 35.709485122494165 36.0 35.0 40.0 31.0 41.0 31 35.36407437852887 37.0 35.0 40.0 29.0 41.0 32 34.7169538764318 37.0 35.0 40.0 22.0 41.0 33 33.80771446229172 37.0 34.0 40.0 16.0 41.0 34 32.98084584875886 37.0 33.0 40.0 12.0 41.0 35 32.45855509087309 37.0 32.0 40.0 10.0 41.0 36 32.09089259034807 37.0 31.0 40.0 8.0 41.0 37 31.71865043411476 37.0 30.0 40.0 8.0 41.0 38 31.635552108771698 36.0 29.0 40.0 8.0 41.0 39 31.583092325139056 36.0 29.0 40.0 7.0 41.0 40 31.45478396265473 36.0 28.0 40.0 7.0 41.0 41 31.218026412898038 36.0 26.0 40.0 7.0 41.0 42 31.13661864503393 36.0 25.0 40.0 7.0 41.0 43 31.14954008436287 36.0 25.0 40.0 7.0 41.0 44 31.137886188130395 36.0 25.0 40.0 7.0 41.0 45 31.0779396499481 36.0 24.0 40.0 7.0 41.0 46 30.958345083732848 35.0 24.0 40.0 7.0 41.0 47 30.937876887814184 35.0 24.0 40.0 7.0 41.0 48 30.93654034237164 35.0 24.0 40.0 7.0 41.0 49 30.929310096543283 35.0 24.0 40.0 7.0 41.0 50 30.804303346313773 35.0 24.0 40.0 7.0 41.0 51 29.776439898956564 35.0 23.0 39.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 12.0 10 24.0 11 16.0 12 14.0 13 13.0 14 22.0 15 52.0 16 105.0 17 228.0 18 528.0 19 1080.0 20 1610.0 21 2489.0 22 3470.0 23 5596.0 24 9283.0 25 16381.0 26 26036.0 27 32478.0 28 31629.0 29 25967.0 30 22319.0 31 21089.0 32 21765.0 33 25877.0 34 36703.0 35 51614.0 36 59332.0 37 73238.0 38 120160.0 39 77509.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.63739567145283 11.79070088383005 14.528143956894535 37.043759487822584 2 50.56536922255357 25.57316948776258 13.802269277155425 10.059192012528426 3 19.63896772490265 24.61238682115192 46.02816495760856 9.720480496336876 4 17.291687917389194 15.108513689465441 55.85979923317392 11.739999159971438 5 22.230905850798926 17.905208777098423 46.366276453399415 13.497608918703236 6 14.819903876731807 28.299662188514407 47.904128740377175 8.976305194376609 7 45.81200760825868 4.802563287151764 45.811707598058334 3.5737215065312222 8 43.326123088185 11.266883074024516 40.65273219289456 4.7542616448959265 9 39.52814395689453 6.128608372684671 40.91269103149507 13.430556638925722 10 24.280275529367998 16.469509963338755 47.27545736555043 11.974757141742819 11 19.78132256496721 16.630315430724647 49.95244838324503 13.635913621063118 12 16.514511493390778 15.20091683117226 53.1445569149351 15.140014760501858 13 15.380022920779307 16.379656908334884 57.17894408409886 11.06137608678695 14 13.887622179154091 21.07961670696804 50.80822747973431 14.22453363414356 15 11.841252602588488 16.8556230911851 58.624543234469975 12.67858107175644 16 12.732132892518347 19.361008274281325 50.300460215647334 17.606398617552994 17 12.694781622575169 18.318472828076153 53.76362796335076 15.223117585997926 18 13.415706134008557 18.235069992379742 53.57942170033782 14.769802173273892 19 12.715782336599442 19.68756937735883 51.09863735367003 16.498010932371702 20 13.766718068414328 19.256004704159942 55.4007836266433 11.576493600782428 21 12.984141460809667 22.71767240086163 51.79091089097029 12.50727524735841 22 12.206515021510732 17.311188580411734 52.438482908418884 18.043813489658646 23 12.215215317320789 22.52221575533568 52.56853733026923 12.694031597074302 24 14.772952280377533 17.506945236138026 50.3198108735697 17.400291609914735 25 11.551292743953294 24.719190452475384 49.30487636579643 14.424640437774885 26 12.144412910038941 17.976311194580617 52.10997173903913 17.769304156341313 27 14.744001296044065 19.683819249854494 49.758341783620644 15.813837670480796 28 10.509207313048643 19.572365460425655 53.7549276675407 16.163499558985006 29 15.383023022782774 17.227935749815494 49.27637539676349 18.112665830638242 30 13.357654160241447 20.901260642861857 52.94895026430899 12.79213493258771 31 15.469125950282308 21.977097221305524 46.46827992151733 16.085496906894832 32 18.289371838642513 22.067850306910437 45.96246272373261 13.680315130714444 33 16.029094989229634 21.150419114249885 44.396709488122596 18.423776408397885 34 16.268953144406908 25.0750025500867 41.939475942182035 16.716568363324352 35 14.883506039205333 25.104103539520345 43.01201240842188 17.000378012852437 36 15.137164663598563 27.03256910734965 41.67486694547615 16.15539928357564 37 17.653950234307967 25.486466539862356 42.79690509477322 14.062678131056455 38 18.770438194898624 27.19847474814144 37.87898788558811 16.152099171371827 39 21.029364998409946 25.07350249908497 38.804969368958545 15.09216313354654 40 18.780488536610246 25.946532182094188 40.44002496084867 14.832954320446895 41 15.287769784172662 28.708276081386767 39.93360774266325 16.07034639177732 42 16.51376146788991 25.46786590744085 42.709452121372124 15.308920503297113 43 18.910092943160066 22.524465831838285 40.53227809745532 18.033163127546338 44 17.677051019734673 23.289041827422132 40.32767114081879 18.70623601202441 45 16.5544128500369 22.773774308326484 40.13476458199578 20.537048259640827 46 20.139534744181304 24.552234775982384 39.15718134416571 16.15104913567061 47 14.030877049819694 22.700421814341688 46.99494782822616 16.27375330761246 48 16.686267333089326 24.221623535200195 40.5898800559219 18.502229075788577 49 15.654982269397161 21.15356922135353 45.42379440900991 17.767654100239408 50 16.234151961166678 20.697703721926544 43.226369696569684 19.84177462033709 51 16.03824530034021 20.50929731610875 39.833704345947766 23.61875303760328 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 793.0 1 1743.0 2 2693.0 3 41903.5 4 81114.0 5 51100.0 6 21086.0 7 19659.5 8 18233.0 9 17548.0 10 16863.0 11 15969.0 12 15075.0 13 14389.5 14 13704.0 15 12758.0 16 11812.0 17 10842.0 18 9872.0 19 8993.0 20 8114.0 21 7745.5 22 7377.0 23 7396.0 24 7415.0 25 7570.5 26 8223.0 27 8720.0 28 9288.5 29 9857.0 30 11185.0 31 12513.0 32 13092.0 33 13671.0 34 14365.5 35 15060.0 36 16371.0 37 17682.0 38 18859.0 39 20036.0 40 22080.5 41 24125.0 42 26033.0 43 27941.0 44 61524.0 45 95107.0 46 68933.0 47 42759.0 48 41922.0 49 41085.0 50 35521.0 51 29957.0 52 26897.5 53 23838.0 54 20937.5 55 18037.0 56 15278.5 57 12520.0 58 10865.0 59 9210.0 60 7884.5 61 6559.0 62 5852.5 63 5146.0 64 4346.0 65 3546.0 66 2910.0 67 2274.0 68 1912.5 69 1551.0 70 1348.0 71 1145.0 72 1003.5 73 862.0 74 756.5 75 519.5 76 388.0 77 311.5 78 235.0 79 181.5 80 128.0 81 106.5 82 85.0 83 60.0 84 35.0 85 31.0 86 27.0 87 16.5 88 6.0 89 4.5 90 3.0 91 2.5 92 2.0 93 3.0 94 4.0 95 3.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 666644.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.71469438750698 #Duplication Level Percentage of deduplicated Percentage of total 1 79.83833875011887 32.505935626173454 2 8.92340536963665 7.266274450411901 3 3.3641951951994202 4.109165376973914 4 1.837787162352501 2.99299770657863 5 1.1002507184767905 2.2398185876208747 6 0.8142254511336334 1.9890564243261528 7 0.5756014676215213 1.6404806490247514 8 0.48617497657572845 1.5835572472107318 9 0.3812592241230642 1.3970567513329728 >10 2.512133617565505 18.253276078560926 >50 0.09803843784342701 2.800346177083117 >100 0.06001592568373428 4.214861717147789 >500 0.0044732366969242945 1.3715640537922498 >1k 0.0026093880732058383 3.326236339815309 >5k 0.0 0.0 >10k+ 0.0014910788989747647 14.309372813947205 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 49242 7.3865511427388535 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCG 16399 2.459933637743683 No Hit GAATCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTC 15562 2.3343793688985426 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGC 13079 1.9619167051679758 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCT 4136 0.6204210943172068 No Hit GCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC 3863 0.5794697019698669 No Hit GAACTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCT 3596 0.5394183402235676 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTAGGAATTCGTA 3453 0.5179676108987705 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTC 3317 0.49756691727518737 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCC 2292 0.34381168959744635 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTAGGAATT 1259 0.18885642111831802 No Hit CTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGCT 970 0.14550494716820372 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGC 921 0.13815469725970683 No Hit GAATGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTT 852 0.12780434534774182 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATG 844 0.12660430454635457 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTAGGAATTCGT 817 0.12255416684167261 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 767 0.11505391183300231 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 722 0.10830368232519906 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 715 0.1072536466239852 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTAT 683 0.10245348341843623 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.16050545718554432 0.0 2 0.0 0.0 0.0 0.9886836152429183 0.0 3 0.0 0.0 0.0 1.211441189000426 0.0 4 0.0 0.0 0.0 2.0180186126328294 0.0 5 0.0 0.0 0.0 5.083372834676379 0.0 6 0.0 0.0 0.0 5.628491368706536 0.0 7 0.0 0.0 0.0 6.717078380664943 0.0 8 0.0 0.0 0.0 7.822915979143291 0.0 9 0.0 0.0 0.0 8.108375684773282 0.0 10 0.0 0.0 0.0 11.311134578575672 0.0 11 0.0 0.0 0.0 12.456273513299452 0.0 12 0.0 0.0 0.0 15.384673078884681 0.0 13 0.0 0.0 0.0 15.854039037327269 0.0 14 1.500051001734059E-4 0.0 0.0 16.092097131302463 0.0 15 1.500051001734059E-4 0.0 0.0 16.8742237236066 0.0 16 1.500051001734059E-4 0.0 0.0 17.446343175667973 0.0 17 1.500051001734059E-4 0.0 0.0 18.007662260516856 0.0 18 1.500051001734059E-4 0.0 0.0 18.60888270201187 0.0 19 1.500051001734059E-4 0.0 0.0 19.18940243968295 0.0 20 1.500051001734059E-4 0.0 0.0 19.60701663856571 0.0 21 1.500051001734059E-4 0.0 0.0 20.03903132706512 0.0 22 1.500051001734059E-4 0.0 0.0 20.525497866927477 0.0 23 1.500051001734059E-4 0.0 0.0 20.964862805335382 0.0 24 1.500051001734059E-4 0.0 0.0 21.324125020250687 0.0 25 1.500051001734059E-4 0.0 0.0 21.65503627123322 0.0 26 1.500051001734059E-4 0.0 0.0 21.967796905094772 0.0 27 1.500051001734059E-4 0.0 0.0 22.32405901800661 0.0 28 1.500051001734059E-4 0.0 0.0 22.65422024348828 0.0 29 1.500051001734059E-4 0.0 0.0 22.998931963686765 0.0 30 1.500051001734059E-4 0.0 0.0 23.425996483880454 0.0 31 1.500051001734059E-4 0.0 0.0 23.774908346883795 0.0 32 1.500051001734059E-4 0.0 0.0 24.12562027108922 0.0 33 3.000102003468118E-4 0.0 0.0 24.49253274611337 0.0 34 3.000102003468118E-4 0.0 0.0 24.842194634617577 0.0 35 3.000102003468118E-4 0.0 0.0 25.216907374850745 0.0 36 3.000102003468118E-4 0.0 0.0 25.558168977745243 0.0 37 3.000102003468118E-4 0.0 0.0 25.907080840748584 0.0 38 3.000102003468118E-4 0.0 0.0 26.28644373908713 0.0 39 3.000102003468118E-4 0.0 0.0 26.684857285147697 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATGG 20 7.0311513E-4 45.0 2 ACAATCG 20 7.0311513E-4 45.0 1 TATCGAG 20 7.0311513E-4 45.0 1 CGGACGG 35 1.2109012E-7 45.0 2 GGTAATC 30 2.1641245E-6 44.999996 8 ATCTACC 30 2.1641245E-6 44.999996 15 TAGCACG 30 2.1641245E-6 44.999996 1 TACGAGG 55 1.8189894E-12 44.999996 2 CGTTTTT 20345 0.0 44.30327 1 TACGGCT 1640 0.0 42.530487 7 ACGGCTG 1655 0.0 42.280968 8 ACAACGA 185 0.0 41.351353 13 CACAACG 185 0.0 41.351353 12 ATGCTAG 55 6.002665E-11 40.90909 1 AGGGTAC 105 0.0 40.714287 6 CGGCTGT 1720 0.0 40.552326 9 CGGGCAT 50 1.0804797E-9 40.500004 6 GTACGAG 50 1.0804797E-9 40.500004 1 GGCGACT 410 0.0 40.060974 10 GAGCGAC 170 0.0 39.705883 18 >>END_MODULE