##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552152_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 324275 Sequences flagged as poor quality 0 Sequence length 51 %GC 36 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.625419782591937 31.0 30.0 33.0 28.0 34.0 2 30.562241924292653 31.0 30.0 33.0 26.0 34.0 3 30.269499653072238 31.0 30.0 34.0 25.0 34.0 4 34.48914964150798 35.0 35.0 37.0 32.0 37.0 5 35.16105157659394 35.0 35.0 37.0 33.0 37.0 6 35.110856526096676 35.0 35.0 37.0 33.0 37.0 7 35.598569115719684 37.0 35.0 37.0 35.0 37.0 8 35.00593940328425 37.0 35.0 37.0 32.0 37.0 9 37.01694549379385 39.0 37.0 39.0 32.0 39.0 10 36.757970858068 39.0 35.0 39.0 32.0 39.0 11 37.02061213476216 39.0 37.0 39.0 33.0 39.0 12 37.19270680749364 39.0 37.0 39.0 34.0 39.0 13 37.07345000385475 39.0 37.0 39.0 33.0 39.0 14 38.25827769639966 40.0 38.0 41.0 33.0 41.0 15 38.30459949117262 40.0 38.0 41.0 33.0 41.0 16 38.21068845886979 40.0 37.0 41.0 34.0 41.0 17 37.879950659162745 40.0 37.0 41.0 33.0 41.0 18 37.61227353326652 39.0 37.0 40.0 33.0 41.0 19 36.907307069616834 37.0 36.0 40.0 32.0 41.0 20 36.42653303523244 37.0 35.0 40.0 32.0 41.0 21 36.70265361190348 38.0 35.0 40.0 33.0 41.0 22 37.01694549379385 38.0 35.0 40.0 33.0 41.0 23 37.097608511294425 38.0 35.0 40.0 33.0 41.0 24 37.013497802790845 38.0 35.0 40.0 33.0 41.0 25 36.546884588697864 38.0 35.0 40.0 33.0 41.0 26 36.682411533420705 38.0 35.0 40.0 33.0 41.0 27 36.9157135147637 38.0 35.0 40.0 33.0 41.0 28 36.72041014570966 38.0 35.0 40.0 33.0 41.0 29 36.65211009174312 38.0 35.0 40.0 33.0 41.0 30 36.26008480456403 38.0 35.0 40.0 31.0 41.0 31 35.992817824377454 38.0 35.0 40.0 31.0 41.0 32 35.50362809343921 38.0 35.0 40.0 27.0 41.0 33 34.78714054429111 38.0 35.0 40.0 21.0 41.0 34 34.1887101996762 38.0 34.0 40.0 16.0 41.0 35 33.85199290725465 38.0 34.0 40.0 15.0 41.0 36 33.447049572122424 38.0 33.0 40.0 10.0 41.0 37 33.17872176393493 38.0 33.0 40.0 10.0 41.0 38 33.07340374681983 38.0 33.0 40.0 10.0 41.0 39 33.11409760234369 38.0 33.0 40.0 10.0 41.0 40 32.938934546295584 38.0 33.0 40.0 10.0 41.0 41 32.78063063757613 38.0 32.0 40.0 10.0 41.0 42 32.5869647675584 38.0 32.0 40.0 10.0 41.0 43 32.67003315087503 38.0 32.0 40.0 10.0 41.0 44 32.6671066224655 38.0 32.0 40.0 10.0 41.0 45 32.67001464806106 38.0 32.0 40.0 10.0 41.0 46 32.578604579446456 38.0 31.0 40.0 10.0 41.0 47 32.54980803330506 37.0 31.0 40.0 10.0 41.0 48 32.57852440058592 37.0 31.0 40.0 10.0 41.0 49 32.52329041708426 37.0 31.0 40.0 10.0 41.0 50 32.432722226505284 37.0 31.0 40.0 10.0 41.0 51 31.068383316629404 35.0 27.0 39.0 8.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 4.0 10 8.0 11 6.0 12 3.0 13 7.0 14 9.0 15 21.0 16 39.0 17 112.0 18 217.0 19 372.0 20 623.0 21 940.0 22 1390.0 23 2135.0 24 3531.0 25 6292.0 26 9929.0 27 12676.0 28 12156.0 29 10300.0 30 9055.0 31 8803.0 32 9595.0 33 12676.0 34 19485.0 35 24254.0 36 28113.0 37 40482.0 38 66948.0 39 44089.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.161899622234216 11.925371983655848 15.543905635648755 32.368822758461185 2 42.429111093978875 28.778043327422715 17.14840798704803 11.644437591550382 3 22.225888520545833 26.711279007015648 40.56186878421093 10.500963688227586 4 20.235910878112712 17.038316243928765 50.2517924601033 12.473980417855216 5 24.75491480996068 20.489707809729396 40.11194202451623 14.643435355793693 6 16.319173540976024 32.39349317708735 41.3155500732403 9.971783208696323 7 51.781358414925606 5.615295659548223 38.51607431963611 4.087271605890062 8 49.87556857605428 12.842803176316398 32.099915195435976 5.181713052193354 9 45.38740266748901 7.220723151645979 33.030915118340914 14.360959062524092 10 28.63402975869247 19.165523089969934 39.39773340528872 12.802713746048877 11 23.337907640120267 19.340374681982887 42.69894379770257 14.622773880194279 12 20.18965384318865 16.80888135070542 46.41770102536427 16.583763780741652 13 17.476524554776038 20.236527638578366 50.191658314702025 12.095289491943566 14 14.898157428108858 24.53781512605042 43.591087811271294 16.97293963456942 15 12.756765091357645 19.83902551846427 53.431809421016105 13.972399969161978 16 13.902089276077403 21.61683756071236 44.71790918202143 19.763163981188807 17 13.840721609744817 21.03893300439442 47.93153958831239 17.188805797548376 18 13.532341376917739 21.456479839642277 47.902243466193816 17.108935317246164 19 15.013800015419013 22.58145092899545 44.68429573664328 17.720453318942255 20 15.714748284634956 21.642741500269832 49.87865237838254 12.763857836712667 21 15.042170996839102 26.599953742965077 44.786986354174694 13.570888906021125 22 13.165368899853519 20.797471282090818 45.73864775267905 20.29851206537661 23 13.751599722457792 25.22241924292653 45.41669878960759 15.609282245008094 24 16.11595096754298 20.657466656387324 44.02436203839334 19.202220337676355 25 12.218949965307225 28.69046334129982 42.803176316398115 16.287410376994835 26 13.30784056741963 23.063757613137 45.09536658700177 18.5330352324416 27 16.92051499498882 24.108858222187955 42.099452625086734 16.87117415773649 28 11.845193123120808 22.85035849202066 48.69848122735333 16.6059671575052 29 17.48670110245933 22.5740498034076 42.38871328347853 17.550535810654537 30 16.587155963302752 25.436435124508517 44.00616760465654 13.970241307532188 31 18.6958599953743 22.541978259193584 42.09575206229281 16.66640968313931 32 20.434816128286176 25.69979184334284 40.098064914039014 13.76732711433197 33 17.193431501040784 24.86377303214864 38.233289646133684 19.709505820676895 34 20.493716752756146 25.963765322642818 37.92398427260812 15.618533651992909 35 19.99506591627477 24.583763780741656 37.335286408141236 18.085883894842343 36 20.527021817901474 28.109783362886436 37.053118495104464 14.310076324107623 37 23.340066301750056 24.81443219489631 38.31192660550459 13.533574897849048 38 17.810191966694937 28.399352401511063 36.916197671729236 16.87425796006476 39 25.563487780433274 25.024747513684375 34.99190501888829 14.419859686994062 40 18.776655616374992 26.431269755608668 39.5318788065685 15.260195821447844 41 22.232981265900857 26.02636650990672 34.7563025210084 16.984349703184026 42 18.545370441754685 23.851669108010178 41.2766941639041 16.326266286331045 43 23.066224654999615 23.687919204379 35.034153110785596 18.21170302983579 44 20.096523012874876 23.6583147020276 37.376917739572896 18.868244545524632 45 17.913807724924833 23.172307455092128 37.81327576902321 21.100609050959836 46 22.366818286947808 25.91627476678745 36.00986816745046 15.707038778814278 47 15.923213322026058 22.875337290879656 44.779585228586846 16.42186415850744 48 18.838023282707578 24.212165600185028 37.658160511911184 19.291650605196207 49 17.58908333975792 21.01765476832935 43.85136072777735 17.54190116413538 50 18.9749441060828 21.305373525557012 39.40328424947961 20.31639811888058 51 17.695166139850436 21.381851823298128 36.68152031454784 24.2414617223036 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 397.0 1 836.5 2 1276.0 3 14648.5 4 28021.0 5 18107.0 6 8193.0 7 7747.5 8 7302.0 9 7040.0 10 6778.0 11 6397.0 12 6016.0 13 5660.0 14 5304.0 15 4900.5 16 4497.0 17 4066.0 18 3635.0 19 3350.0 20 3065.0 21 2928.5 22 2792.0 23 2794.5 24 2797.0 25 2979.0 26 3351.0 27 3541.0 28 4144.0 29 4747.0 30 5399.0 31 6051.0 32 6541.0 33 7031.0 34 7632.0 35 8233.0 36 8902.5 37 9572.0 38 9829.5 39 10087.0 40 11433.5 41 12780.0 42 14197.5 43 15615.0 44 16737.5 45 17860.0 46 34714.0 47 51568.0 48 38721.5 49 25875.0 50 24354.5 51 22834.0 52 18873.0 53 14912.0 54 12373.0 55 9834.0 56 8107.0 57 6380.0 58 5360.5 59 4341.0 60 3795.5 61 3250.0 62 2741.0 63 2232.0 64 1841.5 65 1451.0 66 1191.0 67 931.0 68 790.5 69 650.0 70 536.0 71 422.0 72 386.5 73 351.0 74 279.5 75 172.5 76 137.0 77 103.0 78 69.0 79 55.0 80 41.0 81 28.5 82 16.0 83 13.5 84 11.0 85 7.0 86 3.0 87 3.0 88 3.0 89 2.5 90 2.0 91 2.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 324275.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.09266937584204 #Duplication Level Percentage of deduplicated Percentage of total 1 80.34063097127158 33.81751616920269 2 8.526042994451007 7.177678176992809 3 3.108782543266762 3.925708672653515 4 1.6625965693339462 2.7993251079353216 5 1.0279269286146113 2.1634094174349814 6 0.7386793629677751 1.8655791720096107 7 0.6017565681880891 1.7730678188637807 8 0.4844002289845433 1.6311758947382848 9 0.47183489158247327 1.7874711082230592 >10 2.917919388877213 20.97144249947137 >50 0.07298472650455574 2.082215996631042 >100 0.03538653406281491 3.0879480450783157 >500 0.0036860972982098866 1.0988266533637137 >1k 0.004423316757851864 3.3535779844398905 >5k 0.002211658378925932 7.083568488091921 >10k+ 7.372194596419773E-4 5.381488794869676 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17342 5.347929997687148 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCG 8477 2.6141392336751212 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGC 7432 2.2918818903708273 No Hit GAATCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTC 6918 2.1333744506977106 No Hit GCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTCTGC 2449 0.7552231901935086 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCT 1995 0.6152185644900162 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTA 1916 0.5908565260966772 No Hit GAACTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTCT 1534 0.4730552771567343 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTC 1510 0.4656541515688844 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCC 1403 0.4326574666563873 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTGAGTGT 872 0.2689075630252101 No Hit CTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTCTGCT 832 0.25657235371212705 TruSeq Adapter, Index 15 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTCTGC 730 0.2251175699637653 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGT 564 0.17392645131447074 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGC 543 0.16745046642510214 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTAT 479 0.1477141315241693 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATG 445 0.13722920360804874 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 420 0.12951969778737185 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 414 0.12766941639040938 No Hit GAATGCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTT 403 0.12427723382931154 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 402 0.12396885359648446 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.083802328270758E-4 0.0 0.0 0.2790841107085036 0.0 2 3.083802328270758E-4 0.0 0.0 1.4879346233906408 0.0 3 3.083802328270758E-4 0.0 0.0 1.7919975329581375 0.0 4 3.083802328270758E-4 0.0 0.0 2.608280009251407 0.0 5 3.083802328270758E-4 0.0 0.0 5.589391719990749 0.0 6 3.083802328270758E-4 0.0 0.0 6.203685143782284 0.0 7 3.083802328270758E-4 0.0 0.0 7.349009328502043 0.0 8 3.083802328270758E-4 0.0 0.0 8.555392799321563 0.0 9 3.083802328270758E-4 0.0 0.0 8.883509367049571 0.0 10 3.083802328270758E-4 0.0 0.0 12.341376917739574 0.0 11 3.083802328270758E-4 0.0 0.0 13.710893531724617 0.0 12 3.083802328270758E-4 0.0 0.0 17.19497340220492 0.0 13 3.083802328270758E-4 0.0 0.0 17.750982961992136 0.0 14 3.083802328270758E-4 0.0 0.0 18.104695089044792 0.0 15 3.083802328270758E-4 0.0 0.0 19.037545293346696 0.0 16 3.083802328270758E-4 0.0 0.0 19.7619304602575 0.0 17 3.083802328270758E-4 0.0 0.0 20.50204301904248 0.0 18 3.083802328270758E-4 0.0 0.0 21.24678128131987 0.0 19 3.083802328270758E-4 0.0 0.0 22.03345925526174 0.0 20 3.083802328270758E-4 0.0 0.0 22.55431346850667 0.0 21 3.083802328270758E-4 0.0 0.0 23.06869169686223 0.0 22 3.083802328270758E-4 0.0 0.0 23.590162670572816 0.0 23 3.083802328270758E-4 0.0 0.0 24.099606815203146 0.0 24 3.083802328270758E-4 0.0 0.0 24.50851900393185 0.0 25 3.083802328270758E-4 0.0 0.0 24.873024439133452 0.0 26 3.083802328270758E-4 0.0 0.0 25.252332125510755 0.0 27 3.083802328270758E-4 0.0 0.0 25.617454321178013 0.0 28 3.083802328270758E-4 0.0 0.0 25.98905250173464 0.0 29 3.083802328270758E-4 0.0 0.0 26.356641739264514 0.0 30 3.083802328270758E-4 0.0 0.0 26.787757304756767 0.0 31 3.083802328270758E-4 0.0 0.0 27.16336442834014 0.0 32 3.083802328270758E-4 0.0 0.0 27.549764860072468 0.0 33 3.083802328270758E-4 0.0 0.0 27.919512759232134 0.0 34 3.083802328270758E-4 0.0 0.0 28.299128825842264 0.0 35 3.083802328270758E-4 0.0 0.0 28.681828694780666 0.0 36 3.083802328270758E-4 0.0 0.0 29.08704032071544 0.0 37 3.083802328270758E-4 0.0 0.0 29.459255261737724 0.0 38 3.083802328270758E-4 0.0 0.0 29.85583224115334 0.0 39 3.083802328270758E-4 0.0 0.0 30.216945493793848 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGGGA 20 7.0257875E-4 45.000004 4 TTGTACT 20 7.0257875E-4 45.000004 22 CTGCGAG 20 7.0257875E-4 45.000004 1 CGGGCTA 20 7.0257875E-4 45.000004 6 GCGATGC 30 2.1606647E-6 45.000004 9 GGTTGCG 20 7.0257875E-4 45.000004 2 CGATGCA 20 7.0257875E-4 45.000004 10 GCTACAG 30 2.1606647E-6 45.000004 27 TGATCCG 25 3.8845912E-5 45.0 4 ATCCGGC 25 3.8845912E-5 45.0 6 TGCGAAG 25 3.8845912E-5 45.0 1 CGTTTTT 7325 0.0 44.293518 1 GAATGAC 200 0.0 43.875 1 AATGACT 205 0.0 42.80488 2 GACTAAT 145 0.0 41.896553 9 TACGGCT 910 0.0 41.291206 7 ACGGCTG 905 0.0 41.270714 8 CCCTCGT 55 6.002665E-11 40.909092 14 TCGTGTA 55 6.002665E-11 40.909092 17 GCCCTCG 55 6.002665E-11 40.909092 13 >>END_MODULE