##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552151_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 432807 Sequences flagged as poor quality 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.781595491754985 30.0 28.0 33.0 25.0 33.0 2 28.416388829201008 31.0 27.0 33.0 16.0 34.0 3 28.160212288618254 31.0 25.0 33.0 16.0 34.0 4 33.344964383662926 35.0 32.0 35.0 28.0 37.0 5 34.319849263066445 35.0 33.0 35.0 32.0 37.0 6 33.51805077089788 35.0 33.0 37.0 28.0 37.0 7 34.64767667805742 35.0 35.0 37.0 32.0 37.0 8 33.91767231121493 35.0 35.0 37.0 28.0 37.0 9 36.16255975527198 39.0 35.0 39.0 31.0 39.0 10 35.90343963937737 37.0 35.0 39.0 31.0 39.0 11 36.46456734757063 37.0 35.0 39.0 32.0 39.0 12 36.51150281765313 39.0 35.0 39.0 32.0 39.0 13 36.52231364095313 38.0 35.0 39.0 32.0 39.0 14 37.30956061246699 39.0 36.0 40.0 32.0 41.0 15 37.62045900366676 39.0 36.0 41.0 32.0 41.0 16 37.15075541754177 39.0 36.0 41.0 32.0 41.0 17 37.04783656456573 38.0 36.0 40.0 32.0 41.0 18 36.814778873724315 39.0 36.0 40.0 32.0 41.0 19 36.06256830411708 37.0 34.0 40.0 30.0 41.0 20 35.98578350165316 37.0 35.0 39.0 31.0 41.0 21 36.34153098263198 38.0 35.0 40.0 32.0 41.0 22 36.797369266208726 38.0 35.0 40.0 32.0 41.0 23 36.995187231260125 38.0 35.0 40.0 33.0 41.0 24 36.95219578241572 38.0 35.0 40.0 33.0 41.0 25 36.22111010219336 38.0 35.0 40.0 31.0 41.0 26 36.52211031706973 38.0 35.0 40.0 32.0 41.0 27 36.68850087914475 38.0 35.0 40.0 33.0 41.0 28 36.560721060426474 38.0 35.0 40.0 32.0 41.0 29 36.54872957230359 38.0 35.0 40.0 31.0 41.0 30 36.05710859574822 38.0 35.0 40.0 30.0 41.0 31 35.976285041600526 38.0 35.0 40.0 30.0 41.0 32 35.47891554434194 38.0 35.0 40.0 27.0 41.0 33 35.007601540640515 38.0 35.0 40.0 22.0 41.0 34 34.516953284027295 39.0 35.0 40.0 18.0 41.0 35 34.244845855080904 39.0 34.0 40.0 15.0 41.0 36 33.99503704884625 39.0 34.0 40.0 12.0 41.0 37 34.02843530719235 39.0 34.0 40.0 12.0 41.0 38 33.89201653392852 38.0 34.0 40.0 12.0 41.0 39 33.72088482857255 38.0 34.0 40.0 11.0 41.0 40 33.576885309156275 38.0 33.0 40.0 10.0 41.0 41 33.33801209315006 38.0 33.0 40.0 10.0 41.0 42 33.52443698923539 38.0 33.0 40.0 10.0 41.0 43 33.49436584898118 38.0 33.0 40.0 10.0 41.0 44 33.53275016346778 38.0 34.0 40.0 10.0 41.0 45 33.563544489807235 38.0 34.0 40.0 10.0 41.0 46 33.412747483289316 38.0 33.0 40.0 10.0 41.0 47 33.232242084809165 38.0 33.0 40.0 10.0 41.0 48 33.29260848368904 38.0 33.0 40.0 10.0 41.0 49 33.35648453005612 38.0 33.0 40.0 10.0 41.0 50 33.270436938404416 38.0 33.0 40.0 10.0 41.0 51 32.47481671969261 37.0 31.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 7.0 10 11.0 11 10.0 12 12.0 13 17.0 14 23.0 15 40.0 16 64.0 17 111.0 18 260.0 19 588.0 20 1212.0 21 2004.0 22 2787.0 23 3702.0 24 5158.0 25 8456.0 26 12333.0 27 14327.0 28 13535.0 29 11640.0 30 10911.0 31 11924.0 32 14858.0 33 20539.0 34 27177.0 35 34968.0 36 47822.0 37 74010.0 38 88729.0 39 25570.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.900678593460825 13.41868315438521 16.55888190348123 29.121756348672733 2 39.703840279847604 27.995619294512338 18.549838611667557 13.75070181397251 3 23.546523046069034 26.740787464158387 36.56733832863147 13.14535116114111 4 21.44050350387124 18.240693888962053 45.64135977468017 14.677442832486538 5 26.247958096796033 21.613559854623425 36.13227142814234 16.00621062043821 6 18.59096548808129 32.267731344456074 37.55068656468126 11.590616602781378 7 57.32116162631381 5.268630128440622 33.385088503651744 4.025119741593828 8 55.91961313010187 11.7364090691694 26.618562084254645 5.725415716474087 9 50.57404339578612 7.543547123775725 27.89326420321298 13.989145277225184 10 30.330378205528095 20.90354361181774 35.3034955534453 13.462582629208864 11 24.26000503688711 21.468691587705376 39.45407537308777 14.817228002319741 12 19.780410205934746 19.130929028412204 42.97920320142696 18.109457564226087 13 19.152647715956537 21.258667258154325 46.09652801364118 13.492157012247954 14 15.049202069282613 26.497491953688364 41.38172441758105 17.071581559447978 15 13.415679506107804 21.726543239827453 48.614740519446315 16.243036734618432 16 14.79481616517293 22.533600426980154 41.55501181820072 21.116571589646192 17 15.041808473522842 23.345971761085195 43.3980966111916 18.214123154200372 18 14.883539314290203 21.813417990004783 44.59747647334724 18.705566222357774 19 15.445221542165447 23.71495839947136 40.80317554937882 20.036644508984374 20 17.30910082323068 23.175688008742927 45.328749303962276 14.186461864064121 21 15.777933351355223 27.231768432580804 41.92908155367173 15.061216662392244 22 15.05682671490988 20.86611353328389 43.34818983981313 20.728869911993105 23 15.734958076001544 24.983653221874878 42.75392958062139 16.527459121502194 24 15.940130358335239 23.31709052764858 41.978988325050196 18.763790788965984 25 13.673300108362389 28.901796874819492 40.35909770405747 17.065805312760656 26 14.996753749361725 23.013953101497897 42.97943425129446 19.009858897845923 27 17.505031110864657 23.66967262544275 40.11765059252739 18.707645671165206 28 13.360227537909509 24.278257976419052 43.358818133717804 19.002696351953645 29 18.35344622429859 20.576608049315283 41.07026919620061 19.99967653018551 30 14.565845746487465 25.419182222098996 41.33227974593757 18.682692285475973 31 17.005270247477515 22.81917806320138 37.96472792722854 22.21082376209257 32 18.403121945809563 23.847118923677296 38.34041501177199 19.40934411874115 33 15.46878862864972 23.346895960555166 38.87945435263293 22.304861058162185 34 18.79475147121003 25.157633772097032 36.320346020281555 19.72726873641138 35 16.510823531042703 23.549064594611455 37.76001774462983 22.180094129716014 36 17.51565940476933 25.6631708821715 36.485546675538984 20.335623037520186 37 15.292035480017653 25.927722980450866 36.471914733356904 22.308326806174577 38 15.635375583112104 25.106802801248595 36.46382798799465 22.793993627644653 39 17.683170558701686 27.132416989558855 35.46037841347298 19.72403403826648 40 16.721772060063724 24.899782119974954 39.81497526611169 18.563470553849637 41 15.737499624543966 27.845436880641948 36.06896376444928 20.348099730364805 42 16.475935001051276 24.02733782032176 39.72486581778945 19.77186136083751 43 18.741841051554157 23.464731392976546 36.94949480946473 20.84393274600457 44 17.725452684452886 24.516008290069248 35.379510959850464 22.379028065627406 45 16.08107077750591 24.142631704200717 36.37210119059996 23.404196327693406 46 19.89385569087376 26.111638674975218 35.211306656315635 18.783198977835387 47 14.783725771533271 24.42243309373462 41.48246215980795 19.311378974924157 48 17.26728079721446 25.331845372186677 36.17825035177342 21.222623478825433 49 17.04246927614387 22.401208852906723 40.45174870092212 20.104573170027287 50 17.03276518170917 22.876709480207115 38.509543514776794 21.580981823306924 51 17.258963001984718 22.28845651757019 35.557419357819995 24.895161122625094 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 434.0 1 935.5 2 1437.0 3 13915.0 4 26393.0 5 17579.0 6 8765.0 7 8351.5 8 7938.0 9 7662.0 10 7386.0 11 6948.0 12 6510.0 13 6028.5 14 5547.0 15 5171.5 16 4796.0 17 4582.5 18 4369.0 19 4038.5 20 3708.0 21 3601.5 22 3495.0 23 3574.0 24 3653.0 25 4016.5 26 4902.0 27 5424.0 28 6208.5 29 6993.0 30 7937.0 31 8881.0 32 9976.5 33 11072.0 34 11860.0 35 12648.0 36 13939.0 37 15230.0 38 16212.0 39 17194.0 40 18561.0 41 19928.0 42 21562.0 43 23196.0 44 24101.5 45 25007.0 46 43534.0 47 62061.0 48 48811.0 49 35561.0 50 33419.0 51 31277.0 52 26686.0 53 22095.0 54 18937.0 55 15779.0 56 13319.5 57 10860.0 58 8991.0 59 7122.0 60 5905.5 61 4689.0 62 3871.5 63 3054.0 64 2551.0 65 2048.0 66 1641.5 67 1235.0 68 1072.5 69 910.0 70 760.0 71 610.0 72 514.0 73 418.0 74 362.0 75 256.5 76 207.0 77 154.0 78 101.0 79 81.0 80 61.0 81 41.0 82 21.0 83 13.5 84 6.0 85 3.5 86 1.0 87 1.0 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 432807.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.18734307786046 #Duplication Level Percentage of deduplicated Percentage of total 1 79.42950647840806 32.71490333831333 2 8.580742370686389 7.06835959768388 3 3.1929544252164996 3.9452792803009418 4 1.6618621899193915 2.7379075265733785 5 1.1003649571231606 2.266055449994342 6 0.7828808256736788 1.9346868693660286 7 0.6193311491253467 1.7856023162481847 8 0.48164068724058096 1.5870000180507438 9 0.43981169574051043 1.6303207681907985 >10 3.6071436398848395 27.165317932540155 >50 0.06315922320616754 1.7647444463133772 >100 0.03157961160308377 2.4671118068887457 >500 0.002819608178846765 0.7276841735061609 >1k 0.003947451450385471 3.189686164940985 >5k 0.0016917649073080589 5.360660939841108 >10k+ 5.63921635769353E-4 3.6546793712478265 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15735 3.635569665000797 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCG 8917 2.0602716684341984 No Hit GAATCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTC 7709 1.7811634285027738 RNA PCR Primer, Index 27 (95% over 21bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGC 6454 1.491195844799183 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCCCTATTTCGTA 2342 0.5411187896683741 No Hit GCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCTGC 2286 0.5281799970887717 Illumina PCR Primer Index 6 (95% over 22bp) GAATGACTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCT 2065 0.47711797637284054 No Hit GAACTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCT 1989 0.4595581864433801 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCCCTATTT 1877 0.4336806012841751 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTC 1876 0.4334495514166823 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCC 1298 0.2999027280057855 No Hit CTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCTGCT 787 0.1818362457169131 RNA PCR Primer, Index 27 (96% over 25bp) CCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCTGC 725 0.16751115393235322 RNA PCR Primer, Index 27 (95% over 24bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGCCCTATTTCGT 573 0.13239157407343227 No Hit GAATGCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTT 536 0.12384272897619493 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATG 512 0.1182975321563653 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGC 480 0.11090393639659248 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTAT 453 0.10466558997428416 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.18946089134417882 0.0 2 0.0 0.0 0.0 1.0279408604759166 0.0 3 0.0 0.0 0.0 1.2633806754511827 0.0 4 0.0 0.0 0.0 2.042018728902259 0.0 5 0.0 0.0 0.0 4.602282310591095 0.0 6 0.0 0.0 0.0 5.19284577190295 0.0 7 0.0 0.0 0.0 6.133911882201535 0.0 8 0.0 0.0 0.0 7.255890038747062 0.0 9 0.0 0.0 0.0 7.53684667761843 0.0 10 0.0 0.0 0.0 10.382918945395986 0.0 11 0.0 0.0 0.0 11.540478781535418 0.0 12 0.0 0.0 0.0 14.031196353108891 0.0 13 0.0 0.0 0.0 14.541123410665724 0.0 14 0.0 0.0 0.0 14.804751309475124 0.0 15 0.0 0.0 0.0 15.661946317873786 0.0 16 0.0 0.0 0.0 16.301954450829122 0.0 17 0.0 0.0 0.0 16.93248953921725 0.0 18 0.0 0.0 0.0 17.583819115679738 0.0 19 0.0 0.0 0.0 18.4442488222233 0.0 20 0.0 0.0 0.0 18.928760394355916 0.0 21 2.31049867492901E-4 0.0 0.0 19.40310577231884 0.0 22 2.31049867492901E-4 0.0 0.0 19.99551763257064 0.0 23 2.31049867492901E-4 0.0 0.0 20.51353143548972 0.0 24 2.31049867492901E-4 0.0 0.0 20.931038546049393 0.0 25 2.31049867492901E-4 0.0 0.0 21.305570381255386 0.0 26 2.31049867492901E-4 0.0 0.0 21.68726476235366 0.0 27 2.31049867492901E-4 0.0 0.0 22.105002922780823 0.0 28 2.31049867492901E-4 0.0 0.0 22.504026043941064 0.0 29 2.31049867492901E-4 0.0 0.0 22.91968475556079 0.0 30 2.31049867492901E-4 0.0 0.0 23.359372653399785 0.0 31 2.31049867492901E-4 0.0 0.0 23.76994826793467 0.0 32 2.31049867492901E-4 0.0 0.0 24.16573669095001 0.0 33 2.31049867492901E-4 0.0 0.0 24.543965324035888 0.0 34 2.31049867492901E-4 0.0 0.0 24.928663353411565 0.0 35 2.31049867492901E-4 0.0 0.0 25.33276957165665 0.0 36 2.31049867492901E-4 0.0 0.0 25.734565291226804 0.0 37 2.31049867492901E-4 0.0 0.0 26.14583405536417 0.0 38 4.62099734985802E-4 0.0 0.0 26.54670557546435 0.0 39 4.62099734985802E-4 0.0 0.0 26.981541426085993 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCACGCG 30 2.1623528E-6 45.000004 1 TAACGGG 30 2.1623528E-6 45.000004 3 GTTACGG 30 2.1623528E-6 45.000004 2 GATACCG 20 7.0284074E-4 45.0 27 CCGGGTG 25 3.8867624E-5 45.0 5 TTCCCGA 20 7.0284074E-4 45.0 32 ACGATCC 45 3.8380676E-10 45.0 26 GTTCCCG 20 7.0284074E-4 45.0 31 GCTAGCG 20 7.0284074E-4 45.0 1 TCCCGAT 20 7.0284074E-4 45.0 33 CGGCTAT 20 7.0284074E-4 45.0 31 CACAACG 40 6.7975634E-9 45.0 12 TTCGAAT 20 7.0284074E-4 45.0 43 TTCCTCG 20 7.0284074E-4 45.0 12 CGTTTTT 7830 0.0 43.936783 1 ATGGGCG 70 0.0 41.785713 5 CCGATGA 500 0.0 41.399998 18 CGATGAA 505 0.0 40.9901 19 TACGGGC 55 6.002665E-11 40.909092 4 TGACCCA 55 6.002665E-11 40.909092 11 >>END_MODULE