##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552150_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 443882 Sequences flagged as poor quality 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.504895445185884 31.0 30.0 33.0 28.0 34.0 2 30.450468818289547 31.0 30.0 33.0 25.0 34.0 3 30.06369936154203 31.0 30.0 34.0 25.0 34.0 4 34.44282264205352 35.0 33.0 37.0 32.0 37.0 5 35.09654592887299 35.0 35.0 37.0 33.0 37.0 6 35.048769718078226 35.0 35.0 37.0 32.0 37.0 7 35.54880351084297 37.0 35.0 37.0 33.0 37.0 8 35.023943300246465 37.0 35.0 37.0 32.0 37.0 9 37.00178425797847 39.0 37.0 39.0 32.0 39.0 10 36.583152729779535 39.0 35.0 39.0 32.0 39.0 11 36.87741561946643 39.0 37.0 39.0 33.0 39.0 12 37.112775467353934 39.0 37.0 39.0 34.0 39.0 13 37.012474035892424 39.0 37.0 39.0 33.0 39.0 14 38.15780545280052 40.0 37.0 41.0 33.0 41.0 15 38.27264453165481 40.0 38.0 41.0 33.0 41.0 16 38.11186756840782 40.0 37.0 41.0 34.0 41.0 17 37.82815703272491 39.0 37.0 41.0 33.0 41.0 18 37.571108988424854 39.0 37.0 40.0 33.0 41.0 19 36.91695540706765 37.0 36.0 40.0 32.0 41.0 20 36.58022402350174 38.0 35.0 40.0 32.0 41.0 21 36.8340932950649 38.0 35.0 40.0 33.0 41.0 22 37.14901482826517 38.0 35.0 40.0 33.0 41.0 23 37.20772637773102 38.0 35.0 40.0 33.0 41.0 24 37.12724778206821 39.0 35.0 41.0 33.0 41.0 25 36.66977485007277 38.0 35.0 40.0 32.0 41.0 26 36.83289252549101 38.0 35.0 40.0 33.0 41.0 27 37.04061665037104 38.0 35.0 40.0 33.0 41.0 28 36.90612820524374 39.0 35.0 40.0 33.0 41.0 29 36.87314196115184 39.0 35.0 41.0 33.0 41.0 30 36.517000013517105 38.0 35.0 40.0 32.0 41.0 31 36.38712540720282 39.0 35.0 40.0 31.0 41.0 32 35.931668776837085 39.0 35.0 41.0 30.0 41.0 33 35.258449317611436 39.0 35.0 41.0 22.0 41.0 34 34.744770006443154 39.0 35.0 41.0 18.0 41.0 35 34.456218093997954 39.0 35.0 41.0 15.0 41.0 36 34.22068702943575 39.0 35.0 41.0 15.0 41.0 37 33.90926642666294 39.0 34.0 41.0 10.0 41.0 38 33.81447772155663 39.0 34.0 41.0 10.0 41.0 39 33.72127502354229 38.0 34.0 40.0 10.0 41.0 40 33.60131070870186 38.0 33.0 40.0 10.0 41.0 41 33.40148057366597 38.0 33.0 40.0 10.0 41.0 42 33.394613883870036 38.0 33.0 40.0 10.0 41.0 43 33.411872975250176 38.0 33.0 40.0 10.0 41.0 44 33.38985360974313 38.0 33.0 40.0 10.0 41.0 45 33.355795008583364 38.0 33.0 40.0 10.0 41.0 46 33.237259001266104 38.0 33.0 40.0 10.0 41.0 47 33.216859435615774 38.0 33.0 40.0 10.0 41.0 48 33.201078214480425 38.0 33.0 40.0 10.0 41.0 49 33.177060570151525 38.0 33.0 40.0 10.0 41.0 50 33.071820889335456 38.0 33.0 40.0 10.0 41.0 51 31.819096066071612 36.0 30.0 40.0 9.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 0.0 9 5.0 10 4.0 11 10.0 12 10.0 13 12.0 14 12.0 15 26.0 16 64.0 17 117.0 18 262.0 19 477.0 20 796.0 21 1211.0 22 1894.0 23 2922.0 24 4535.0 25 8288.0 26 12905.0 27 15506.0 28 15079.0 29 12364.0 30 10729.0 31 10972.0 32 12506.0 33 16654.0 34 25688.0 35 31264.0 36 37498.0 37 55752.0 38 97884.0 39 68431.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.7349250476478 12.999400741638546 16.334746621849952 29.93092758886371 2 40.209334913332825 28.60332250462961 18.331899018207544 12.855443563830027 3 23.00836708855056 27.29914707061787 37.49712761499678 12.195358225834795 4 21.100652876214852 18.000729923718467 46.680649361767315 14.217967838299368 5 25.502273126641768 21.261281151296966 37.07133877922511 16.16510694283616 6 18.18749127020244 32.17544302314579 38.80152833410681 10.835537372544955 7 56.57449502345217 5.341734965598965 33.92883694315156 4.154933067797297 8 54.87224082075867 11.46948963913833 28.309325451358696 5.348944088744306 9 49.68978241965207 7.546825507679969 29.294046615992535 13.469345456675422 10 28.77161047305365 20.52527473517737 36.83749284719813 13.865621944570854 11 22.708287337625766 21.057848707539392 41.008195871875856 15.225668082958984 12 19.801884284562114 18.86875340743711 44.47668524517777 16.852677062823002 13 17.477167355288117 20.734789876588824 48.17924583560496 13.608796932518102 14 14.95419953951726 25.203770371405014 42.42568971032842 17.416340378749307 15 13.235499524648443 21.411546311857656 50.788497844021606 14.56445631947229 16 14.59306752695536 22.723832009407904 42.313497731379066 20.369602732257672 17 14.851920104892741 21.690449263543012 45.20548253815203 18.252148093412213 18 14.826462888785757 21.978588904258338 45.73850708071064 17.456441126245263 19 15.071122505530749 24.02710630302648 42.00778585299697 18.893985338445805 20 16.01619349286522 23.14871970478641 46.608783415412205 14.226303386936168 21 15.365119558801663 26.691778445622937 42.946548857579266 14.996553137996136 22 14.676423013323362 20.833915319837253 43.11348511541356 21.37617655142583 23 14.538097962972142 25.538994597663343 43.7704164620327 16.152490977331812 24 15.985554719497525 21.875408329240653 42.62439116702187 19.514645784239956 25 13.567569759530688 28.680370008245436 41.136608377902235 16.615451854321645 26 15.072023645923915 22.71099075880527 43.01728837844292 19.199697216827897 27 16.649244619065428 23.872335440499953 40.447911832423934 19.03050810801069 28 13.213196299917545 22.624931851257767 44.924777305680344 19.237094543144348 29 19.082323680617822 20.259213034094646 40.54455913959115 20.113904145696377 30 14.454967761702434 24.295871425288702 42.269341852113854 18.979818960895013 31 17.105672228204792 22.38320094079057 38.61364056213138 21.89748626887326 32 17.85069004825607 23.526973384818486 39.01487332218923 19.607463244736216 33 14.394366070261915 23.111547663568246 39.723169671218926 22.77091659495091 34 19.177844562293583 25.109601200319005 36.857768506044394 18.854785731343014 35 15.55796360293952 23.422891669407637 38.32257221513826 22.69657251251459 36 17.650862166071164 25.090677252062488 37.153342555003356 20.105118026862996 37 15.181737488792066 25.77959908263908 36.785677274590995 22.252986153977858 38 15.229047359433363 24.950099350728348 37.38042993408158 22.44042335575671 39 17.803380177614773 26.962571133769785 36.04088473963801 19.193163948977432 40 16.683938524202375 24.78361366309064 41.104392608846496 17.428055203860485 41 15.507950311118721 28.222365403418024 36.74242253571896 19.5272617497443 42 16.39895287486314 23.907029345636904 40.68829103230138 19.00572674719858 43 18.63806146678622 23.350124582659358 37.31261911949572 20.699194831058705 44 17.77949995719583 24.489391324721435 35.78676314876476 21.94434556931797 45 16.002225816771123 23.97033445825692 37.01817149602822 23.00926822894373 46 20.21528243992773 26.194123663496153 35.47451800253221 18.116075894043913 47 14.574819433993719 23.920321166436125 42.51738074533321 18.987478654236938 48 17.716870699870686 24.860435881608176 36.255356153211885 21.16733726530925 49 16.644063061804715 22.165800820938898 41.213205311321474 19.976930805934913 50 16.912602898968647 22.5463073519539 38.72020041362344 21.820889335454016 51 17.454188275262343 21.9574121050189 35.60135351287054 24.987046106848215 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 507.0 1 1019.5 2 1532.0 3 15290.5 4 29049.0 5 19222.0 6 9395.0 7 9000.5 8 8606.0 9 8325.0 10 8044.0 11 7651.0 12 7258.0 13 6755.5 14 6253.0 15 5766.5 16 5280.0 17 4971.0 18 4662.0 19 4339.0 20 4016.0 21 3864.0 22 3712.0 23 3794.0 24 3876.0 25 4230.0 26 5052.5 27 5521.0 28 6256.5 29 6992.0 30 8041.0 31 9090.0 32 10001.5 33 10913.0 34 11795.0 35 12677.0 36 13906.0 37 15135.0 38 16250.0 39 17365.0 40 18803.5 41 20242.0 42 21727.0 43 23212.0 44 24656.5 45 26101.0 46 47332.5 47 68564.0 48 51423.0 49 34282.0 50 32600.0 51 30918.0 52 26157.5 53 21397.0 54 18009.5 55 14622.0 56 12318.5 57 10015.0 58 8216.0 59 6417.0 60 5441.0 61 4465.0 62 3796.5 63 3128.0 64 2565.0 65 2002.0 66 1639.5 67 1277.0 68 1101.5 69 926.0 70 796.5 71 667.0 72 549.5 73 432.0 74 368.5 75 261.5 76 218.0 77 161.0 78 104.0 79 80.0 80 56.0 81 44.0 82 32.0 83 22.5 84 13.0 85 11.5 86 10.0 87 7.0 88 4.0 89 3.5 90 3.0 91 2.5 92 2.0 93 1.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 443882.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.43800575333061 #Duplication Level Percentage of deduplicated Percentage of total 1 79.25729598695261 32.050069911138166 2 8.759419013721178 7.08426872945381 3 3.1395438610681774 3.8087067815012623 4 1.6984550425742002 2.7472853913355553 5 1.0901967721660109 2.20426916725558 6 0.7910340246162152 1.9192703063106467 7 0.6044878847626934 1.7110999193296714 8 0.48546392153052886 1.5704954281508772 9 0.43397223881586094 1.5794074701019394 >10 3.6266837779325773 26.913143830319175 >50 0.07168074345378285 1.9388842957487635 >100 0.03273608756157011 2.4056316041426675 >500 0.003386491816714149 0.9010847792367412 >1k 0.003386491816714149 2.939252732272227 >5k 0.0011288306055713831 3.819111350295944 >10k+ 0.0011288306055713831 6.408018303406977 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17106 3.8537268913810427 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCG 10970 2.471377528262016 No Hit GAATCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTC 9196 2.0717217638922056 RNA PCR Primer, Index 27 (95% over 21bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGC 7537 1.697973785825963 No Hit GAATGACTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCT 2667 0.6008353571444663 No Hit GCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCTGC 2411 0.5431623719817429 Illumina PCR Primer Index 6 (95% over 22bp) GAATGATCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTC 2251 0.5071167562550408 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCCCTATTTCGTA 2235 0.5035121946823705 No Hit GAACTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCT 2083 0.4692688597420035 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCC 1231 0.27732595599731463 No Hit CTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCTGCT 756 0.17031553430866764 RNA PCR Primer, Index 27 (96% over 25bp) CCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCTGC 721 0.16243055586845154 RNA PCR Primer, Index 27 (95% over 24bp) GAATGCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTT 710 0.15995241978724073 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCCCTATTT 696 0.15679842841115432 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGCCCTATTTCGT 536 0.12075281268445216 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTAT 529 0.11917581699640895 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATG 474 0.1067851365903551 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGC 469 0.10565871109889566 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.252850982918884E-4 0.0 0.0 0.18946476766347814 0.0 2 2.252850982918884E-4 0.0 0.0 1.0748352039505995 0.0 3 2.252850982918884E-4 0.0 0.0 1.3228740971699686 0.0 4 2.252850982918884E-4 0.0 0.0 2.100558256473567 0.0 5 2.252850982918884E-4 0.0 0.0 4.985784510297782 0.0 6 2.252850982918884E-4 0.0 0.0 5.624918334151869 0.0 7 2.252850982918884E-4 0.0 0.0 6.733771587944544 0.0 8 2.252850982918884E-4 0.0 0.0 7.9568443865712055 0.0 9 2.252850982918884E-4 0.0 0.0 8.253770146119916 0.0 10 2.252850982918884E-4 0.0 0.0 11.555999116882415 0.0 11 2.252850982918884E-4 0.0 0.0 12.693688863256451 0.0 12 2.252850982918884E-4 0.0 0.0 15.450953181250872 0.0 13 2.252850982918884E-4 0.0 0.0 15.941173555134021 0.0 14 2.252850982918884E-4 0.0 0.0 16.213993809165498 0.0 15 2.252850982918884E-4 0.0 0.0 17.039438409306978 0.0 16 2.252850982918884E-4 0.0 0.0 17.68285265002861 0.0 17 2.252850982918884E-4 0.0 0.0 18.312299214656147 0.0 18 2.252850982918884E-4 0.0 0.0 18.973961548339425 0.0 19 2.252850982918884E-4 0.0 0.0 19.536273153675978 0.0 20 2.252850982918884E-4 0.0 0.0 19.97422738475541 0.0 21 2.252850982918884E-4 0.0 0.0 20.450930652741043 0.0 22 2.252850982918884E-4 0.0 0.0 20.997697586295455 0.0 23 4.505701965837768E-4 0.0 0.0 21.499858070388076 0.0 24 4.505701965837768E-4 0.0 0.0 21.902217255937387 0.0 25 4.505701965837768E-4 0.0 0.0 22.25546429005907 0.0 26 4.505701965837768E-4 0.0 0.0 22.609612464573917 0.0 27 4.505701965837768E-4 0.0 0.0 23.0378794364268 0.0 28 4.505701965837768E-4 0.0 0.0 23.406220572134036 0.0 29 4.505701965837768E-4 0.0 0.0 23.809706183174807 0.0 30 4.505701965837768E-4 0.0 0.0 24.26207866054492 0.0 31 4.505701965837768E-4 0.0 0.0 24.65948157393181 0.0 32 6.758552948756652E-4 0.0 0.0 25.05057650456653 0.0 33 6.758552948756652E-4 0.0 0.0 25.425901478320814 0.0 34 6.758552948756652E-4 0.0 0.0 25.78793463127588 0.0 35 6.758552948756652E-4 0.0 0.0 26.17249629406013 0.0 36 6.758552948756652E-4 0.0 0.0 26.574630194511155 0.0 37 6.758552948756652E-4 0.0 0.0 26.961219423180033 0.0 38 6.758552948756652E-4 0.0 0.0 27.346907511455747 0.0 39 6.758552948756652E-4 0.0 0.0 27.74926669700506 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAAAGG 25 3.8869224E-5 45.000004 2 TAGGACG 25 3.8869224E-5 45.000004 1 TATACGG 25 3.8869224E-5 45.000004 2 CGATCCA 25 3.8869224E-5 45.000004 27 GCGTAAG 25 3.8869224E-5 45.000004 15 TCACGAC 20 7.0286024E-4 45.0 25 TAGCGAG 20 7.0286024E-4 45.0 1 GCGTTCT 20 7.0286024E-4 45.0 26 GTGTACG 20 7.0286024E-4 45.0 1 GTCAAGC 40 6.7993824E-9 45.0 16 CCGACAC 20 7.0286024E-4 45.0 45 GTATACG 20 7.0286024E-4 45.0 1 TCGACAG 20 7.0286024E-4 45.0 1 CCGTTGT 20 7.0286024E-4 45.0 16 TCGCGTT 20 7.0286024E-4 45.0 32 GCCCGTT 20 7.0286024E-4 45.0 14 CACGTGA 30 2.16248E-6 44.999996 43 CGTTTTT 8480 0.0 43.540684 1 AACGGGA 90 0.0 42.5 4 TGCGAGG 70 0.0 41.785713 2 >>END_MODULE