##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552145_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 483522 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.839086949507987 30.0 28.0 33.0 25.0 33.0 2 28.409832437820825 31.0 27.0 33.0 16.0 34.0 3 28.183867538602172 31.0 25.0 33.0 16.0 34.0 4 33.34705349498058 35.0 32.0 35.0 28.0 37.0 5 34.33777780535322 35.0 33.0 35.0 32.0 37.0 6 33.479670004674034 35.0 33.0 37.0 28.0 37.0 7 34.61570311175086 35.0 35.0 37.0 32.0 37.0 8 33.94280094804373 35.0 35.0 37.0 28.0 37.0 9 36.23896534180451 39.0 35.0 39.0 31.0 39.0 10 35.95476937967662 37.0 35.0 39.0 31.0 39.0 11 36.49441390464136 37.0 35.0 39.0 32.0 39.0 12 36.55873982983194 39.0 35.0 39.0 32.0 39.0 13 36.567291664081466 38.0 35.0 39.0 32.0 39.0 14 37.38034256972796 39.0 36.0 40.0 32.0 41.0 15 37.6546175768631 39.0 37.0 41.0 32.0 41.0 16 37.18438664631599 39.0 36.0 41.0 32.0 41.0 17 37.0775538651809 38.0 36.0 40.0 32.0 41.0 18 36.83471486302588 39.0 36.0 40.0 32.0 41.0 19 36.15032614855167 37.0 34.0 40.0 30.0 41.0 20 36.07576490831855 37.0 35.0 40.0 31.0 41.0 21 36.441760664457874 38.0 35.0 40.0 32.0 41.0 22 36.90040370448501 38.0 35.0 40.0 33.0 41.0 23 37.10507484664607 39.0 35.0 40.0 33.0 41.0 24 37.06301057656115 39.0 35.0 40.0 33.0 41.0 25 36.34985998568835 38.0 35.0 40.0 31.0 41.0 26 36.66210224146988 38.0 35.0 40.0 32.0 41.0 27 36.84981448620745 38.0 35.0 40.0 33.0 41.0 28 36.726430234818686 38.0 35.0 40.0 32.0 41.0 29 36.801109360070484 39.0 35.0 40.0 32.0 41.0 30 36.23939965503121 38.0 35.0 40.0 31.0 41.0 31 36.20866268753025 38.0 35.0 40.0 31.0 41.0 32 35.71233780469141 38.0 35.0 40.0 29.0 41.0 33 35.344681317499514 39.0 35.0 40.0 23.0 41.0 34 34.89133896699633 39.0 35.0 40.0 20.0 41.0 35 34.590217197976514 39.0 35.0 40.0 17.0 41.0 36 34.36258536323063 39.0 35.0 40.0 15.0 41.0 37 34.32000405359012 39.0 35.0 40.0 15.0 41.0 38 34.1764387142674 39.0 34.0 40.0 15.0 41.0 39 34.02960775311154 39.0 34.0 40.0 12.0 41.0 40 33.94496630970256 38.0 34.0 40.0 13.0 41.0 41 33.77467002535562 38.0 33.0 40.0 12.0 41.0 42 33.89483622255037 39.0 34.0 40.0 12.0 41.0 43 33.91918051298597 39.0 34.0 40.0 11.0 41.0 44 33.962845537535 39.0 34.0 40.0 12.0 41.0 45 33.96769330040826 39.0 34.0 40.0 12.0 41.0 46 33.78786487481438 38.0 34.0 40.0 10.0 41.0 47 33.66497904955721 38.0 33.0 40.0 10.0 41.0 48 33.64360256617072 38.0 34.0 40.0 10.0 41.0 49 33.69540372516659 38.0 34.0 40.0 10.0 41.0 50 33.6690822754704 38.0 34.0 40.0 10.0 41.0 51 32.775422834948564 37.0 32.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 6.0 10 12.0 11 7.0 12 17.0 13 15.0 14 16.0 15 27.0 16 48.0 17 120.0 18 299.0 19 659.0 20 1284.0 21 1984.0 22 2832.0 23 3641.0 24 5394.0 25 8645.0 26 13001.0 27 14958.0 28 13974.0 29 12202.0 30 11495.0 31 13185.0 32 16167.0 33 22172.0 34 30076.0 35 38743.0 36 53396.0 37 83840.0 38 104045.0 39 31259.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.989034625104956 13.663907743598017 17.651730427984663 27.695327203312363 2 39.08426090229607 28.335835804782413 19.292400345796054 13.287502947125468 3 25.002792013600207 26.82442577586956 35.509863046562515 12.66291916396772 4 21.83850993336394 19.226219282680002 44.90074908690814 14.03452169704791 5 26.369430966946695 22.15059500912058 35.169030571514845 16.310943452417884 6 18.6436191114365 33.21668920959129 36.21345047381505 11.92624120515716 7 59.42025388710338 5.13068691807198 31.51025186030832 3.93880733451632 8 58.27738965341804 11.443946707698926 25.011685093956427 5.266978544926601 9 53.060046905828486 7.319625580635421 25.863766281575607 13.75656123196049 10 30.323129040664128 22.580565103552683 33.286386141685384 13.809919714097807 11 24.085563841976164 21.149399613668045 39.13720575278891 15.627830791566877 12 19.870450568950325 19.51079785407903 42.00429349646965 18.614458080500988 13 19.56043365141607 21.266043737410087 45.750968932127186 13.422553679046661 14 15.915097968654992 26.658973118079427 39.71629005505437 17.709638858211207 15 14.057685069138529 21.80066263789445 47.54116668941641 16.600485603550613 16 15.37613593590364 23.498413722643438 39.98639151889677 21.139058822556162 17 15.806726477802457 23.662005038033428 42.58006874557931 17.9511997385848 18 15.93391820847862 22.02650551577798 43.08966293157292 18.949913344170483 19 16.12005244849252 23.389008152679715 40.56485537369551 19.92608402513226 20 17.920590996893626 23.411344261481382 44.541923635325794 14.126141106299198 21 16.451991843183972 27.486856854496793 41.17454841765215 14.886602884667088 22 15.743027204553256 21.48733666720439 42.113905882255615 20.65573024598674 23 16.32252513846319 25.57008781399812 41.38860279366813 16.71878425387056 24 16.567601887814824 23.247959761913624 40.65316572979099 19.531272620480557 25 13.505280007941728 29.36102183561451 39.69354031460823 17.440157841835532 26 14.531086486240543 22.897613759043022 43.2542883260741 19.317011428642335 27 17.875711963468053 24.212341941007857 39.81990478199544 18.09204131352865 28 13.867621328502116 24.376140072220085 43.838749839717735 17.91748875956006 29 16.518793353766736 20.876816359958802 44.07700166693553 18.527388619338932 30 15.57095644045152 25.95311071678228 43.29771964874401 15.178213194022195 31 20.3386815904964 22.523897568259564 38.34923747006341 18.78818337118063 32 18.37806759568334 24.255359632033286 40.88107676589689 16.485496006386473 33 17.48131419046083 22.300536480242886 39.12272864523227 21.095420684064013 34 20.115734134124196 22.951385872824815 38.52254912909857 18.410330863952414 35 16.09254594413491 23.15634035266234 39.12293546105452 21.628178242148238 36 19.77428121160981 24.902486339814942 35.99650067628774 19.326731772287506 37 17.378733542630943 24.36166296466345 40.931746642345125 17.32785685036048 38 18.826444298294597 25.066904918493883 35.3977688709097 20.70888191230182 39 21.13450887446693 23.848139278047327 37.18900070731011 17.828351140175627 40 18.028135224457213 23.958992558766713 38.06445208284215 19.948420133933926 41 19.20988083272323 24.994312564888464 32.99063951588552 22.805167086502788 42 17.329304561116142 23.509374961222033 37.45992943444145 21.70139104322037 43 19.080000496357975 23.06265278518868 34.993443938435064 22.863902780018282 44 18.96356318843817 23.77451284533072 36.40765053089622 20.854273435334896 45 18.13981576846555 22.986544562605218 35.95038074792874 22.923258921000492 46 20.86750964795811 25.869763940420498 34.75581255868399 18.506913852937405 47 16.025537617729906 23.421478236771026 41.47898130798598 19.07400283751308 48 18.958806424526703 24.51470667311932 35.482356542204904 21.044130360149072 49 18.01241722196715 21.963840321639967 39.53015581504047 20.493586641352408 50 17.97084724169738 22.427314579274572 37.07318384685702 22.528654332171026 51 18.019035328278754 21.72786346846679 34.85756594322492 25.395535260029533 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 303.0 1 846.5 2 1390.0 3 13449.0 4 25508.0 5 16946.5 6 8385.0 7 8126.5 8 7868.0 9 7568.0 10 7268.0 11 7069.0 12 6870.0 13 6484.5 14 6099.0 15 5645.0 16 5191.0 17 4868.0 18 4545.0 19 4423.5 20 4302.0 21 4226.0 22 4150.0 23 4304.0 24 4458.0 25 4638.5 26 5608.0 27 6397.0 28 7646.0 29 8895.0 30 9453.5 31 10012.0 32 11283.5 33 12555.0 34 13815.5 35 15076.0 36 15921.5 37 16767.0 38 17756.5 39 18746.0 40 21243.5 41 23741.0 42 25207.0 43 26673.0 44 28266.0 45 29859.0 46 50506.5 47 71154.0 48 55885.5 49 40617.0 50 38265.5 51 35914.0 52 29916.0 53 23918.0 54 20553.0 55 17188.0 56 14346.5 57 11505.0 58 9403.0 59 7301.0 60 6177.0 61 5053.0 62 4298.5 63 3544.0 64 3025.5 65 2507.0 66 2068.0 67 1629.0 68 1370.5 69 1112.0 70 940.5 71 769.0 72 677.0 73 585.0 74 477.0 75 297.5 76 226.0 77 186.5 78 147.0 79 103.5 80 60.0 81 39.5 82 19.0 83 18.0 84 17.0 85 11.5 86 6.0 87 4.5 88 3.0 89 2.0 90 1.0 91 0.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 483522.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.299173164529364 #Duplication Level Percentage of deduplicated Percentage of total 1 78.32316472289618 31.563587779619507 2 8.75569998891005 7.0569494005950775 3 3.260324937482817 3.941651976847602 4 1.8720269662000546 3.017645555182582 5 1.198715515748337 2.415362207207518 6 0.8562894340587617 2.0704653709254535 7 0.7391167293140877 2.0850055144400295 8 0.5581067938600064 1.799299386405175 9 0.48774316879416574 1.7690081777147122 >10 3.8493754173281243 27.31553444876979 >50 0.06370139596412164 1.7625426211674986 >100 0.025376978880015166 1.8762887109882114 >500 0.004661077753472173 1.216978806871219 >1k 0.003625282697145023 3.271504509982226 >5k 0.0010357950563271495 3.576218805648832 >10k+ 0.0010357950563271495 5.26195672763457 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15034 3.1092690715210476 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCG 10178 2.104971438734949 No Hit GAATCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTC 9368 1.9374506227224408 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGC 7767 1.6063384913199399 No Hit GCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCTGC 2715 0.561504957375259 TruSeq Adapter, Index 21 (95% over 21bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTA 2458 0.5083532910601792 No Hit GAATGACTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCT 2418 0.5000806581706727 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTTGCCT 2271 0.469678732301736 No Hit GAACTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCT 2067 0.42748830456525244 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTC 1891 0.39108871985142357 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCC 1855 0.3836433502508676 No Hit CCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCTGC 908 0.18778876659179936 TruSeq Adapter, Index 21 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCTGCT 867 0.17930931788005508 TruSeq Adapter, Index 14 (95% over 22bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGC 724 0.14973465530006907 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGT 685 0.14166883823280016 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 572 0.11829865031994406 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTAT 542 0.11209417565281414 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATG 521 0.1077510433858232 No Hit GAATGCTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTT 509 0.10526925351897122 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCTTGTTGCC 503 0.10402835858554521 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.18530697672494736 0.0 2 0.0 0.0 0.0 1.0686173535020123 0.0 3 0.0 0.0 0.0 1.291357994051977 0.0 4 0.0 0.0 0.0 1.9906022890375206 0.0 5 0.0 0.0 0.0 4.628331285856693 0.0 6 0.0 0.0 0.0 5.225615380479068 0.0 7 0.0 0.0 0.0 6.226603960109364 0.0 8 0.0 0.0 0.0 7.294807681966901 0.0 9 0.0 0.0 0.0 7.624265286791501 0.0 10 0.0 0.0 0.0 10.545952407542986 0.0 11 0.0 0.0 0.0 11.799876737769946 0.0 12 0.0 0.0 0.0 14.445878367478626 0.0 13 0.0 0.0 0.0 14.92631152253672 0.0 14 0.0 0.0 0.0 15.200135671179387 0.0 15 0.0 0.0 0.0 15.975074557103916 0.0 16 0.0 0.0 0.0 16.59903789279495 0.0 17 0.0 0.0 0.0 17.24575096893213 0.0 18 0.0 0.0 0.0 17.891429965958114 0.0 19 0.0 0.0 0.0 18.816103507182714 0.0 20 0.0 0.0 0.0 19.313288743842058 0.0 21 0.0 0.0 0.0 19.78255384449932 0.0 22 0.0 0.0 0.0 20.326065825339903 0.0 23 0.0 0.0 0.0 20.787471924752133 0.0 24 0.0 0.0 0.0 21.1584995098465 0.0 25 0.0 0.0 0.0 21.50119332729431 0.0 26 0.0 0.0 0.0 21.850918882698203 0.0 27 0.0 0.0 0.0 22.25152113037256 0.0 28 0.0 0.0 0.0 22.600626238309736 0.0 29 0.0 0.0 0.0 22.950765425358103 0.0 30 0.0 0.0 0.0 23.37949462485678 0.0 31 0.0 0.0 0.0 23.743076840350593 0.0 32 2.0681582223766446E-4 0.0 0.0 24.124652032379085 0.0 33 2.0681582223766446E-4 0.0 0.0 24.47665256182759 0.0 34 2.0681582223766446E-4 0.0 0.0 24.823482695720152 0.0 35 2.0681582223766446E-4 0.0 0.0 25.195544359925712 0.0 36 2.0681582223766446E-4 0.0 0.0 25.560160654530716 0.0 37 2.0681582223766446E-4 0.0 0.0 25.935324556069837 0.0 38 2.0681582223766446E-4 0.0 0.0 26.311315720897912 0.0 39 2.0681582223766446E-4 0.0 0.0 26.687513701548223 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGGACGG 45 3.8380676E-10 45.000004 2 ACGGGCC 45 3.8380676E-10 45.000004 5 TTTAGCG 25 3.8874412E-5 45.0 1 GTCGAAA 20 7.0292293E-4 45.0 8 GACGTAG 20 7.0292293E-4 45.0 1 ATAGCGG 40 6.8012014E-9 45.0 2 ATTCGTA 20 7.0292293E-4 45.0 32 GTTAGCG 25 3.8874412E-5 45.0 1 TTCGTAC 20 7.0292293E-4 45.0 33 GCGTTGA 20 7.0292293E-4 45.0 17 TCGGCGT 25 3.8874412E-5 45.0 4 ACGATAT 20 7.0292293E-4 45.0 32 TACGAGG 20 7.0292293E-4 45.0 2 TCGCTGG 20 7.0292293E-4 45.0 2 CGGGCCC 20 7.0292293E-4 45.0 6 AATTCGT 20 7.0292293E-4 45.0 31 TCGTACA 20 7.0292293E-4 45.0 34 CCGACAG 20 7.0292293E-4 45.0 1 CGCACTA 20 7.0292293E-4 45.0 39 ATACGAG 20 7.0292293E-4 45.0 1 >>END_MODULE