SRR3552137_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552137_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	465579
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15993	3.4350776130366705	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCG	6119	1.3142774910380408	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTC	5464	1.173592451549576	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGC	4923	1.0573930525216988	No Hit
GCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTCTGC	1499	0.3219646934247464	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCCATCAAT	1335	0.28673973697267274	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCCATCAATCGTA	1237	0.26569067762936044	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCT	1192	0.25602529323702317	No Hit
GAACTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTCT	1142	0.24528597724553727	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTC	948	0.20361743119857212	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCC	882	0.18944153408981074	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	504	0.10825230519417757	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTCA	35	1.2098462E-7	45.000004	6
CGGGTAT	30	2.1627093E-6	45.000004	6
AAGTACG	20	7.028957E-4	45.000004	1
ATGTACG	20	7.028957E-4	45.000004	1
TGCGTGG	25	3.887217E-5	45.000004	2
CGTTTTT	8410	0.0	42.9132	1
CGATGAA	505	0.0	41.435646	19
ATCCGGC	50	1.0786607E-9	40.500004	6
GGTATGA	50	1.0786607E-9	40.500004	8
ACGGCTG	570	0.0	40.263153	8
CGCCAAC	45	1.924127E-8	40.000004	42
CCGATGA	515	0.0	39.757282	18
TACGGCT	580	0.0	39.568966	7
GTCGTTT	40	3.4523146E-7	39.375004	9
CCCATCG	40	3.4523146E-7	39.375004	40
AGCACGG	40	3.4523146E-7	39.375004	2
TCGACAC	75	0.0	39.000004	34
CGTATGG	35	6.2402814E-6	38.57143	2
ATAGCGG	35	6.2402814E-6	38.57143	2
AGGCGAC	35	6.2402814E-6	38.57143	31