SRR3552136_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552136_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	471498
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17406	3.6916381405647534	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCG	7252	1.538076513580121	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTC	6475	1.3732826014108226	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGC	5583	1.1840983418805593	No Hit
GCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTCTGC	1596	0.33849560337477574	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCT	1417	0.30053149748249197	No Hit
GAACTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTCT	1348	0.28589728906591333	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTC	1193	0.25302334262287435	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCCATCAATCGTA	1174	0.2489936330588889	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCC	864	0.18324574017281092	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTACG	25	3.887294E-5	45.0	1
TTGTGCG	20	7.029049E-4	45.0	1
CGCATCT	20	7.029049E-4	45.0	45
ACGGGTC	50	2.1827873E-11	45.0	5
CTAACGG	20	7.029049E-4	45.0	2
TGCGCAT	20	7.029049E-4	45.0	43
ACTACGG	25	3.887294E-5	45.0	2
GTACTCC	20	7.029049E-4	45.0	42
TACTCCA	20	7.029049E-4	45.0	43
TCCCGAT	20	7.029049E-4	45.0	39
CGTAAGG	45	3.8380676E-10	45.0	2
CGATATT	20	7.029049E-4	45.0	33
TACGTTG	25	3.887294E-5	45.0	1
CTTACGA	20	7.029049E-4	45.0	29
CCCGATG	20	7.029049E-4	45.0	40
TACCGGG	30	2.1627675E-6	44.999996	3
CGTTTTT	8730	0.0	43.14433	1
TAGGGTA	110	0.0	42.954544	5
TACGGCT	760	0.0	41.151314	7
GCTCGTA	55	6.002665E-11	40.909092	32