##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552136_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 471498 Sequences flagged as poor quality 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.60239067822133 31.0 30.0 33.0 28.0 34.0 2 30.533262071101046 31.0 30.0 33.0 25.0 34.0 3 30.151871269867527 31.0 30.0 34.0 25.0 34.0 4 34.48115792643871 35.0 33.0 37.0 32.0 37.0 5 35.14818726696614 35.0 35.0 37.0 33.0 37.0 6 35.08573313142367 35.0 35.0 37.0 32.0 37.0 7 35.58267479395459 37.0 35.0 37.0 35.0 37.0 8 35.19394143771554 37.0 35.0 37.0 32.0 37.0 9 37.238942689046404 39.0 37.0 39.0 34.0 39.0 10 36.701139771536674 39.0 35.0 39.0 32.0 39.0 11 36.91763909921145 39.0 37.0 39.0 33.0 39.0 12 37.11719667951932 39.0 37.0 39.0 34.0 39.0 13 37.04224408162919 39.0 37.0 39.0 33.0 39.0 14 38.22301473176981 40.0 38.0 41.0 33.0 41.0 15 38.34702162045226 40.0 38.0 41.0 34.0 41.0 16 38.20283649135309 40.0 37.0 41.0 34.0 41.0 17 37.87328260141082 40.0 37.0 41.0 33.0 41.0 18 37.62905463013629 39.0 37.0 40.0 33.0 41.0 19 36.974884304917516 38.0 36.0 40.0 32.0 41.0 20 36.670240382779994 38.0 35.0 40.0 32.0 41.0 21 36.89727421961493 38.0 35.0 40.0 33.0 41.0 22 37.191650865963375 39.0 35.0 40.0 33.0 41.0 23 37.23690874616647 39.0 35.0 40.0 33.0 41.0 24 37.16134745004221 39.0 35.0 41.0 33.0 41.0 25 36.68963813208116 38.0 35.0 40.0 32.0 41.0 26 36.797070189057 38.0 35.0 40.0 33.0 41.0 27 37.01918990112365 38.0 35.0 40.0 33.0 41.0 28 36.8968373142622 39.0 35.0 41.0 33.0 41.0 29 36.8143936983826 39.0 35.0 41.0 33.0 41.0 30 36.469036984250195 38.0 35.0 41.0 32.0 41.0 31 36.30256331946265 39.0 35.0 41.0 31.0 41.0 32 35.77615175462038 38.0 35.0 41.0 29.0 41.0 33 35.207812122214726 39.0 35.0 41.0 22.0 41.0 34 34.714461142995304 39.0 35.0 41.0 18.0 41.0 35 34.36943104742756 39.0 35.0 41.0 15.0 41.0 36 34.15232726331819 39.0 34.0 41.0 15.0 41.0 37 33.72400307106287 38.0 34.0 41.0 10.0 41.0 38 33.70650776885586 38.0 34.0 41.0 10.0 41.0 39 33.620946430313595 38.0 33.0 41.0 10.0 41.0 40 33.543896262550426 38.0 33.0 41.0 10.0 41.0 41 33.43186821577186 38.0 33.0 40.0 10.0 41.0 42 33.24102117082151 38.0 33.0 40.0 10.0 41.0 43 33.26739880126745 38.0 33.0 40.0 10.0 41.0 44 33.26069463709284 38.0 33.0 40.0 10.0 41.0 45 33.19499764580125 38.0 33.0 40.0 10.0 41.0 46 33.05695464243751 38.0 33.0 40.0 10.0 41.0 47 33.017355322822155 37.0 32.0 40.0 10.0 41.0 48 33.02469999872746 37.0 33.0 40.0 10.0 41.0 49 33.00305621656932 37.0 33.0 40.0 10.0 41.0 50 32.91469953212951 37.0 32.0 40.0 10.0 41.0 51 31.716454788779593 35.0 30.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 14.0 9 11.0 10 14.0 11 5.0 12 18.0 13 9.0 14 21.0 15 27.0 16 62.0 17 112.0 18 297.0 19 592.0 20 889.0 21 1344.0 22 2010.0 23 3078.0 24 4812.0 25 8179.0 26 13187.0 27 15971.0 28 15730.0 29 13751.0 30 12610.0 31 12986.0 32 14049.0 33 18162.0 34 28662.0 35 33170.0 36 38913.0 37 55818.0 38 100248.0 39 76745.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.06951461087852 14.88808011910973 16.791587663150214 30.250817606861535 2 40.490097518971446 25.841891163907377 19.34133336726773 14.326677949853444 3 25.003499484621354 24.480061421257354 38.65021696804652 11.866222126074765 4 22.383764088076727 19.863710980746472 43.787460392196785 13.965064538980018 5 23.15874086422424 23.027669258406185 37.714051809339594 16.099538068029982 6 19.159572256934283 31.784440230923565 38.34904920063288 10.706938311509274 7 60.00958646696274 5.726429380400341 30.55495463395391 3.709029518683006 8 59.607675960449455 9.224429371916742 27.044229243814392 4.123665423819401 9 54.579022604549756 7.266838883728033 28.21178456748491 9.942353944237304 10 30.74286635362186 20.872835091559246 35.37936534195267 13.004933212866227 11 24.548354393868056 20.725432557508196 39.97683977450593 14.749373274117811 12 21.435297710700787 19.818535815634426 42.42796363929433 16.318202834370453 13 18.72118227436808 21.389486275657585 46.12638865912474 13.76294279084959 14 16.719477070952582 24.841886922107832 42.128068411742994 16.310567595196588 15 15.687447242618207 21.1977569364027 48.424171470504646 14.690624350474446 16 17.342597423530957 22.91059559107356 42.41735914044174 17.329447844953744 17 17.236552435005027 21.81663548944004 43.76794811430801 17.178863961246922 18 17.45330839155203 21.618331360896548 44.39658280628974 16.53177744126168 19 17.035066956805757 23.51356739583201 42.17281939690094 17.278546250461297 20 18.365083202897996 22.74601376888131 44.64515225939453 14.243750768826166 21 17.429342224145174 26.11294215457966 42.10282970447383 14.354885916801344 22 17.02679544770073 21.487259755078494 42.4073909115203 19.07855388570047 23 16.48639018617258 25.077518886612456 42.690955210838645 15.745135716376316 24 17.44397643256175 21.915257328769158 42.408663451382616 18.23210278728648 25 15.719684919130092 26.66034638535052 41.33930578708711 16.280662908432273 26 16.364862629321863 22.736681809891028 42.964763371212605 17.933692189574504 27 17.052458334924008 24.137536108318596 40.97514729648906 17.834858260268334 28 14.431450398517068 23.61049251534471 44.31810951478055 17.639947571357673 29 18.887672906353792 22.418971024267336 41.08140437499205 17.611951694386825 30 16.402614645237097 23.518021285350095 42.559883605020595 17.519480464392213 31 18.72139436434513 22.769131576379962 39.16708024212191 19.34239381715299 32 18.594352468091063 26.53945509843096 38.67481940538454 16.19137302809344 33 16.181828979126102 24.53202346563506 38.42200815273872 20.86413940250012 34 18.554903732359413 25.80010943842816 36.943953102664274 18.70103372654815 35 16.410674064365065 28.08707566097841 35.286682021981 20.215568252675514 36 18.62001535531434 29.10256247110274 33.6198668923304 18.65755528125252 37 17.114388608223152 29.458025272641663 34.64892746098605 18.778658658149133 38 16.378860567807287 28.714013633143725 34.77575726726306 20.131368531785927 39 18.475794170919073 27.790785963036956 34.699829055478496 19.033590810565475 40 18.066036335254868 27.03447310487001 37.11235254444345 17.787138015431665 41 16.372709958472782 29.638089663158702 33.000139979384855 20.989060398983664 42 17.703150384519127 27.914434419658196 35.9634611387535 18.418954057069172 43 18.83846803167776 27.123338805254743 34.02601919838472 20.012173964682777 44 18.189260611922002 26.07116042910044 35.09686149251959 20.64271746645797 45 17.104632469278766 25.956843931469486 35.468443132314455 21.470080466937294 46 19.525215377371698 27.701708172675175 34.173209642458716 18.59986680749441 47 16.111415106744886 25.99904983690281 39.69179084534823 18.19774421100408 48 18.05734064619574 26.646136356888046 35.62772270508041 19.668800291835808 49 17.10145111962299 24.568927121642087 38.88966655213808 19.439955206596846 50 17.069001353134052 25.048250469779298 37.28881140535061 20.59393677173604 51 17.008343619697218 24.608800037327835 35.269290643862746 23.11356569911219 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 478.0 1 1398.0 2 2318.0 3 17605.5 4 32893.0 5 21403.0 6 9913.0 7 9254.0 8 8595.0 9 8369.5 10 8144.0 11 7864.5 12 7585.0 13 7027.5 14 6470.0 15 6290.5 16 6111.0 17 5798.5 18 5486.0 19 5068.0 20 4650.0 21 4429.0 22 4208.0 23 4416.0 24 4624.0 25 4870.0 26 5715.0 27 6314.0 28 7257.5 29 8201.0 30 9242.5 31 10284.0 32 11121.0 33 11958.0 34 12925.5 35 13893.0 36 14460.5 37 15028.0 38 16505.5 39 17983.0 40 19610.0 41 21237.0 42 22935.0 43 24633.0 44 26087.5 45 27542.0 46 41059.0 47 54576.0 48 43029.0 49 31482.0 50 31048.0 51 30614.0 52 27124.0 53 23634.0 54 21023.0 55 18412.0 56 15952.0 57 13492.0 58 11704.5 59 9917.0 60 8577.0 61 7237.0 62 6442.0 63 5647.0 64 4750.0 65 3853.0 66 3250.0 67 2647.0 68 2297.0 69 1947.0 70 1665.0 71 1383.0 72 1214.0 73 1045.0 74 901.5 75 635.5 76 513.0 77 417.0 78 321.0 79 244.0 80 167.0 81 134.5 82 102.0 83 74.5 84 47.0 85 30.5 86 14.0 87 12.5 88 11.0 89 8.5 90 6.0 91 6.0 92 6.0 93 3.5 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 471498.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.33281498450291 #Duplication Level Percentage of deduplicated Percentage of total 1 77.78574483769466 30.59532310132797 2 8.781868170444529 6.908311919327795 3 3.545740562040043 4.183918725293051 4 1.938838980073341 3.0503997955186812 5 1.2948717467738342 2.546547542225766 6 0.8992225131940116 2.1221371644815874 7 0.6329015691416753 1.7425660225715764 8 0.5324270400684757 1.6753483407807899 9 0.46188974768807745 1.6350681590148495 >10 3.957568227470561 29.749671957512163 >50 0.12285571302600568 3.081645036472928 >100 0.040586262338948215 3.1506773369049377 >500 5.484630045803812E-4 0.1863872111664407 >1k 0.0027423150229019064 1.4514041165831169 >5k 0.0016453890137411438 4.165667879194409 >10k+ 5.484630045803812E-4 3.75492569162392 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17406 3.6916381405647534 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCG 7252 1.538076513580121 No Hit GAATCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTC 6475 1.3732826014108226 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGC 5583 1.1840983418805593 No Hit GCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTCTGC 1596 0.33849560337477574 No Hit GAATGACTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCT 1417 0.30053149748249197 No Hit GAACTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTCT 1348 0.28589728906591333 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTC 1193 0.25302334262287435 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCCATCAATCGTA 1174 0.2489936330588889 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCC 864 0.18324574017281092 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07317104208289325 0.0 2 0.0 0.0 0.0 0.5874892364336646 0.0 3 0.0 0.0 0.0 0.7128344128713165 0.0 4 0.0 0.0 0.0 1.1365901870209418 0.0 5 0.0 0.0 0.0 2.9539892003783685 0.0 6 0.0 0.0 0.0 3.3800779642755643 0.0 7 0.0 0.0 0.0 4.034375543480566 0.0 8 0.0 0.0 0.0 4.80723141985756 0.0 9 0.0 0.0 0.0 5.063011932182109 0.0 10 0.0 0.0 0.0 7.190698581966413 0.0 11 0.0 0.0 0.0 7.970553427586119 0.0 12 0.0 0.0 0.0 9.88848309006613 0.0 13 0.0 0.0 0.0 10.221252264060505 0.0 14 0.0 0.0 0.0 10.382864826574027 0.0 15 0.0 0.0 0.0 10.824224068818955 0.0 16 0.0 0.0 0.0 11.218499336158372 0.0 17 0.0 0.0 0.0 11.626348362029107 0.0 18 0.0 0.0 0.0 12.12942578759613 0.0 19 0.0 0.0 0.0 12.51394491599116 0.0 20 0.0 0.0 0.0 12.810446703909667 0.0 21 0.0 0.0 0.0 13.149790667192649 0.0 22 0.0 0.0 0.0 13.51267661792839 0.0 23 0.0 0.0 0.0 13.879804368205168 0.0 24 0.0 0.0 0.0 14.179911685733556 0.0 25 0.0 0.0 0.0 14.451811036314046 0.0 26 0.0 0.0 0.0 14.727528006481469 0.0 27 0.0 0.0 0.0 15.006002146350568 0.0 28 0.0 0.0 0.0 15.295504965026362 0.0 29 0.0 0.0 0.0 15.596460642462958 0.0 30 0.0 0.0 0.0 15.94810582441495 0.0 31 0.0 0.0 0.0 16.25160658157617 0.0 32 0.0 0.0 0.0 16.56274257791125 0.0 33 0.0 0.0 0.0 16.890845772410486 0.0 34 0.0 0.0 0.0 17.205587298355454 0.0 35 0.0 0.0 0.0 17.521813454139785 0.0 36 0.0 0.0 0.0 17.850340828593122 0.0 37 0.0 0.0 0.0 18.17441431352837 0.0 38 0.0 0.0 0.0 18.550237752864277 0.0 39 0.0 0.0 0.0 18.964449478046568 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGTACG 25 3.887294E-5 45.0 1 TTGTGCG 20 7.029049E-4 45.0 1 CGCATCT 20 7.029049E-4 45.0 45 ACGGGTC 50 2.1827873E-11 45.0 5 CTAACGG 20 7.029049E-4 45.0 2 TGCGCAT 20 7.029049E-4 45.0 43 ACTACGG 25 3.887294E-5 45.0 2 GTACTCC 20 7.029049E-4 45.0 42 TACTCCA 20 7.029049E-4 45.0 43 TCCCGAT 20 7.029049E-4 45.0 39 CGTAAGG 45 3.8380676E-10 45.0 2 CGATATT 20 7.029049E-4 45.0 33 TACGTTG 25 3.887294E-5 45.0 1 CTTACGA 20 7.029049E-4 45.0 29 CCCGATG 20 7.029049E-4 45.0 40 TACCGGG 30 2.1627675E-6 44.999996 3 CGTTTTT 8730 0.0 43.14433 1 TAGGGTA 110 0.0 42.954544 5 TACGGCT 760 0.0 41.151314 7 GCTCGTA 55 6.002665E-11 40.909092 32 >>END_MODULE