SRR3552134_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552134_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	331082
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20397	6.160709431500353	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCG	9088	2.7449393201684176	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGC	8469	2.5579765737793054	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTC	7525	2.272850834536459	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTA	2065	0.623712554593726	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCT	2059	0.6219003147256571	No Hit
GCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	1977	0.5971330365287149	No Hit
GAACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCT	1718	0.5189046822237391	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTC	1498	0.4524558870612114	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCC	1179	0.3561051340755462	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTAGGATCGT	761	0.22985242326674357	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTAGGATCGTCGT	555	0.16763218779637673	No Hit
CTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGCT	545	0.16461178801626183	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGC	523	0.15796690850000905	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATG	508	0.15343630882983672	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTT	466	0.14075062975335417	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTAT	462	0.1395424698413082	No Hit
CCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	444	0.1341057502371014	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTTTTTTTTTTTTT	411	0.12413843096272222	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	353	0.10662011223805583	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCGG	30	2.160803E-6	45.000004	2
TCAAGCG	30	2.160803E-6	45.000004	17
ACGCGAT	20	7.0260034E-4	45.0	26
TAGACGG	20	7.0260034E-4	45.0	2
CGCGATT	20	7.0260034E-4	45.0	27
TACGGTC	20	7.0260034E-4	45.0	40
TAACGGG	20	7.0260034E-4	45.0	3
ACGGGGT	35	1.2084274E-7	45.0	5
ATCGTTG	20	7.0260034E-4	45.0	23
AGTATGG	20	7.0260034E-4	45.0	2
GAACGTA	20	7.0260034E-4	45.0	20
GTTCCAT	20	7.0260034E-4	45.0	29
GAGTTTA	20	7.0260034E-4	45.0	41
ATGCGTT	20	7.0260034E-4	45.0	12
CTACAGG	35	1.2084274E-7	45.0	2
CGGCTAC	20	7.0260034E-4	45.0	25
CATCCCC	20	7.0260034E-4	45.0	16
AATACGG	20	7.0260034E-4	45.0	2
CTTACTA	20	7.0260034E-4	45.0	10
TGATCCG	25	3.8847702E-5	44.999996	4

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content