##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552134_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 331082 Sequences flagged as poor quality 0 Sequence length 51 %GC 35 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.711714922587152 31.0 30.0 33.0 28.0 34.0 2 30.76835043886409 31.0 30.0 33.0 27.0 34.0 3 30.37513667309005 31.0 30.0 34.0 25.0 34.0 4 34.487613340501746 35.0 35.0 37.0 32.0 37.0 5 35.178170362629196 35.0 35.0 37.0 33.0 37.0 6 35.13208812318398 36.0 35.0 37.0 33.0 37.0 7 35.56910070616947 37.0 35.0 37.0 35.0 37.0 8 35.046435626219484 37.0 35.0 37.0 32.0 37.0 9 37.060845953570414 39.0 37.0 39.0 32.0 39.0 10 36.82697035779656 39.0 37.0 39.0 32.0 39.0 11 37.05609184431651 39.0 37.0 39.0 33.0 39.0 12 37.21657172543358 39.0 37.0 39.0 34.0 39.0 13 37.05880416331906 39.0 37.0 39.0 33.0 39.0 14 38.27784959617255 40.0 38.0 41.0 33.0 41.0 15 38.23946635576685 40.0 38.0 41.0 33.0 41.0 16 38.256498390126914 40.0 37.0 41.0 34.0 41.0 17 37.80523858137863 40.0 37.0 41.0 32.0 41.0 18 37.41289167034149 39.0 37.0 40.0 33.0 41.0 19 36.67013005841453 37.0 36.0 39.0 32.0 41.0 20 35.95836982983067 36.0 35.0 40.0 32.0 41.0 21 36.2523695036275 36.0 35.0 40.0 32.0 41.0 22 36.57007025449889 37.0 35.0 40.0 33.0 41.0 23 36.62860258183773 37.0 35.0 40.0 33.0 41.0 24 36.48500975589129 37.0 35.0 40.0 33.0 41.0 25 36.10829039331646 36.0 35.0 40.0 32.0 41.0 26 36.20803003485541 36.0 35.0 40.0 33.0 41.0 27 36.41124253206154 37.0 35.0 40.0 33.0 41.0 28 36.205933877408015 37.0 35.0 40.0 33.0 41.0 29 36.128122338272696 37.0 35.0 40.0 32.0 41.0 30 35.66248240617128 36.0 35.0 40.0 31.0 41.0 31 35.37208606931213 37.0 35.0 40.0 29.0 41.0 32 34.643737805135885 37.0 35.0 40.0 22.0 41.0 33 33.604466567194834 37.0 33.0 40.0 16.0 41.0 34 32.84618614119765 37.0 33.0 40.0 10.0 41.0 35 32.33713702345643 37.0 31.0 40.0 8.0 41.0 36 31.998788819688173 37.0 31.0 40.0 8.0 41.0 37 31.609519696026965 37.0 29.0 40.0 8.0 41.0 38 31.550878634296037 36.0 29.0 40.0 8.0 41.0 39 31.444125624467656 36.0 27.0 40.0 7.0 41.0 40 31.265958282238238 36.0 26.0 40.0 7.0 41.0 41 31.11116883430691 36.0 25.0 40.0 7.0 41.0 42 30.942005303822015 36.0 24.0 40.0 7.0 41.0 43 30.94827565376553 35.0 24.0 40.0 7.0 41.0 44 30.91299134353423 35.0 24.0 40.0 7.0 41.0 45 30.84827927824527 35.0 23.0 40.0 7.0 41.0 46 30.641557076494646 35.0 23.0 40.0 7.0 41.0 47 30.520109821736003 35.0 23.0 40.0 7.0 41.0 48 30.548045499302287 35.0 23.0 40.0 7.0 41.0 49 30.509393443316156 35.0 24.0 40.0 7.0 41.0 50 30.383460894884045 35.0 23.0 40.0 7.0 41.0 51 29.021970388000558 35.0 20.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 4.0 10 8.0 11 6.0 12 7.0 13 14.0 14 13.0 15 32.0 16 53.0 17 136.0 18 336.0 19 532.0 20 793.0 21 1225.0 22 1975.0 23 2932.0 24 4859.0 25 8404.0 26 13442.0 27 16390.0 28 15584.0 29 13227.0 30 11620.0 31 11154.0 32 11278.0 33 13377.0 34 19937.0 35 25004.0 36 27943.0 37 35166.0 38 57450.0 39 38181.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.66625186509686 10.634525585806538 13.344126228547609 37.35509632054899 2 48.45929407216339 26.89122332231894 14.190744286913818 10.458738318603851 3 19.123963247775475 26.628448541448947 45.10906663605995 9.138521574715629 4 16.78285137820842 14.762505965289566 56.50050440676328 11.954138249738735 5 23.34406582055201 17.383306854495263 45.38271485613836 13.889912468814373 6 15.1445865374741 29.468832494668995 46.82888227085737 8.557698696999534 7 46.10791284334395 4.674370699705813 45.497490047782726 3.7202264091675175 8 43.655952301846675 12.627989440682368 38.98097752218484 4.735080735286123 9 40.325357464313974 5.6572087881552005 39.36758869403954 14.649845053491282 10 26.545387547495785 15.887302843404353 44.97979352547103 12.587516083628831 11 22.147081387692474 16.015367794081225 48.436036993856504 13.401513824369793 12 17.491437166623374 15.218586332086915 51.28366990654884 16.00630659474088 13 16.585317232588906 17.039585359518185 55.248548697905655 11.126548709987254 14 14.440229308751306 21.87615152741617 48.36082903933165 15.322790124500878 15 11.631257513244453 16.873463371611866 58.112793809388606 13.38248530575507 16 12.980168055043764 18.912837303145444 49.328565128880456 18.77842951293033 17 13.223310237343014 17.868987139137737 52.99895494167608 15.908747681843169 18 13.641031526932904 18.23626775239971 52.22361831812059 15.899082402546801 19 13.756712838511307 19.71686772461203 49.75595169776671 16.770467739109947 20 14.414857950598343 19.45892558339022 54.37837152125455 11.747844944756888 21 13.638917247086823 24.290659111640018 49.37236092569213 12.698062715581035 22 12.560634525585806 17.29752750074 51.40931853740162 18.732519436272586 23 12.612887441781794 23.30782102319063 50.84359765858609 13.235693876441484 24 15.305573845754225 17.291486701179767 49.011121111990384 18.391818341075624 25 10.969789961399291 25.671887931086555 48.131278656042916 15.227043451471237 26 11.986456527385965 18.273418669695122 52.25895699554793 17.481167807370984 27 14.630514494898545 21.741139657245032 47.441117306286664 16.187228541569763 28 11.191789345237737 19.391570668293657 53.602128777765024 15.814511208703582 29 15.94318023933648 17.777771065778268 50.337076615460816 15.941972079424433 30 13.436550461819127 25.081399774074097 49.38323436490054 12.09881539920624 31 19.723814644106294 18.51656085199437 46.40874466144339 15.350879842455948 32 19.379791109151206 22.96289136830151 44.096024549809414 13.56129297273787 33 15.596438344579289 22.73213282510073 42.43752303054833 19.23390579977166 34 18.112733401393008 21.07332926586163 46.220271715164216 14.593665617581141 35 15.400716438827844 26.579216025033077 38.263632574407545 19.756434961731532 36 21.102325103750733 24.688445762681148 40.059864323641875 14.149364809926244 37 19.89144683190267 26.48951015156366 39.15404642958542 14.464996586948248 38 20.854652321781312 26.948308878163115 34.85571550250391 17.341323297551664 39 22.330419654345448 22.890401773578752 40.565177206855104 14.2140013652207 40 16.884940890776303 26.044605263952736 39.365172374215454 17.70528147105551 41 19.460737823258288 24.854567750587467 38.69615382292 16.988540603234245 42 18.672111440670285 21.635123624963 40.44889181532068 19.243873119046036 43 22.423750007551 22.806132619713544 36.480690584205725 18.28942678852973 44 18.557336249025923 22.585643435765157 39.98556248905105 18.87145782615787 45 17.28846630139965 21.246700213240224 39.31050313819537 22.15433034716475 46 21.944110522468755 24.473997378292992 37.530883587751674 16.051008511486582 47 14.79361608302475 22.11778350982536 46.370385584235926 16.71821482291396 48 18.116659921107157 23.727052512670575 39.19391570668294 18.962371859539328 49 16.97374064431168 20.310074241426594 44.34792589147099 18.368259222790726 50 17.838783141336588 20.610906059526037 41.210032559909635 20.340278239227743 51 16.99760180257459 20.66587733552413 38.11804930500601 24.21847155689527 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 310.0 1 957.0 2 1604.0 3 19268.5 4 36933.0 5 23365.0 6 9797.0 7 9271.0 8 8745.0 9 8502.0 10 8259.0 11 7775.5 12 7292.0 13 6975.5 14 6659.0 15 6311.5 16 5964.0 17 5449.0 18 4934.0 19 4668.0 20 4402.0 21 4050.5 22 3699.0 23 3590.5 24 3482.0 25 3575.5 26 3519.5 27 3370.0 28 3845.5 29 4321.0 30 4607.0 31 4893.0 32 5404.0 33 5915.0 34 6216.5 35 6518.0 36 6918.0 37 7318.0 38 8013.0 39 8708.0 40 9588.5 41 10469.0 42 11820.0 43 13171.0 44 14489.5 45 15808.0 46 33779.0 47 51750.0 48 36863.0 49 21976.0 50 21453.0 51 20930.0 52 17731.0 53 14532.0 54 12420.5 55 10309.0 56 8738.5 57 7168.0 58 6187.0 59 5206.0 60 4551.5 61 3897.0 62 3374.0 63 2851.0 64 2463.5 65 2076.0 66 1743.5 67 1411.0 68 1116.0 69 821.0 70 720.5 71 620.0 72 551.5 73 483.0 74 390.0 75 255.5 76 214.0 77 175.5 78 137.0 79 109.5 80 82.0 81 59.5 82 37.0 83 30.5 84 24.0 85 17.0 86 10.0 87 7.0 88 4.0 89 3.5 90 3.0 91 2.0 92 1.0 93 1.0 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 331082.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.84164412128581 #Duplication Level Percentage of deduplicated Percentage of total 1 81.64562872928298 35.79478598807853 2 8.085657420981686 7.089770302746255 3 3.019348456501288 3.9711960152424917 4 1.6125474025608204 2.827869174071012 5 1.0138240390536348 2.2223856360897014 6 0.7075375262088487 1.8611765055901965 7 0.5552421107794894 1.7039908915362147 8 0.4467441995456783 1.5668800167784258 9 0.38007963000162265 1.4996984288653015 >10 2.4009310516308404 17.758068987747265 >50 0.0804465669139415 2.406507821550096 >100 0.041610293231349044 3.3995153446306534 >500 0.0034675244359457535 0.8792950877982156 >1k 0.004161029323134905 3.1912452425760964 >5k 0.0020805146615674526 7.626030218587429 >10k+ 6.935048871891508E-4 6.201584338112104 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20397 6.160709431500353 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCG 9088 2.7449393201684176 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGC 8469 2.5579765737793054 No Hit GAATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTC 7525 2.272850834536459 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTA 2065 0.623712554593726 No Hit GAATGACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCT 2059 0.6219003147256571 No Hit GCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC 1977 0.5971330365287149 No Hit GAACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCT 1718 0.5189046822237391 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTC 1498 0.4524558870612114 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCC 1179 0.3561051340755462 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTAGGATCGT 761 0.22985242326674357 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTAGGATCGTCGT 555 0.16763218779637673 No Hit CTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGCT 545 0.16461178801626183 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGC 523 0.15796690850000905 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATG 508 0.15343630882983672 No Hit GAATGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTT 466 0.14075062975335417 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTAT 462 0.1395424698413082 No Hit CCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC 444 0.1341057502371014 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTTTTTTTTTTTTT 411 0.12413843096272222 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 353 0.10662011223805583 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.040799560229792E-4 0.0 0.0 0.18394234660899716 0.0 2 6.040799560229792E-4 0.0 0.0 1.0665031623585697 0.0 3 6.040799560229792E-4 0.0 0.0 1.2761189070985435 0.0 4 6.040799560229792E-4 0.0 0.0 2.060516729994382 0.0 5 6.040799560229792E-4 0.0 0.0 5.154010184788058 0.0 6 6.040799560229792E-4 0.0 0.0 5.649355748726902 0.0 7 6.040799560229792E-4 0.0 0.0 6.6962263125147246 0.0 8 6.040799560229792E-4 0.0 0.0 7.667888921777687 0.0 9 6.040799560229792E-4 0.0 0.0 7.929455542735637 0.0 10 6.040799560229792E-4 0.0 0.0 11.432817247690904 0.0 11 6.040799560229792E-4 0.0 0.0 12.54915700642137 0.0 12 6.040799560229792E-4 0.0 0.0 16.12380014618735 0.0 13 6.040799560229792E-4 0.0 0.0 16.599815151533456 0.0 14 6.040799560229792E-4 0.0 0.0 16.87406745156789 0.0 15 6.040799560229792E-4 0.0 0.0 17.82458726237005 0.0 16 6.040799560229792E-4 0.0 0.0 18.440446777535474 0.0 17 6.040799560229792E-4 0.0 0.0 19.009490096109122 0.0 18 6.040799560229792E-4 0.0 0.0 19.55286001655179 0.0 19 6.040799560229792E-4 0.0 0.0 20.16871953171722 0.0 20 6.040799560229792E-4 0.0 0.0 20.57073474245051 0.0 21 6.040799560229792E-4 0.0 0.0 20.98634175219432 0.0 22 6.040799560229792E-4 0.0 0.0 21.421581360508878 0.0 23 6.040799560229792E-4 0.0 0.0 21.79580889326511 0.0 24 6.040799560229792E-4 0.0 0.0 22.11536719000127 0.0 25 6.040799560229792E-4 0.0 0.0 22.40592964884832 0.0 26 6.040799560229792E-4 0.0 0.0 22.688034988311053 0.0 27 6.040799560229792E-4 0.0 0.0 22.998834125684876 0.0 28 6.040799560229792E-4 0.0 0.0 23.281241505125617 0.0 29 6.040799560229792E-4 0.0 0.0 23.56757540428051 0.0 30 6.040799560229792E-4 0.0 0.0 23.925492778224125 0.0 31 9.061199340344688E-4 0.0 0.0 24.205181797862764 0.0 32 9.061199340344688E-4 0.0 3.020399780114896E-4 24.51205441552244 0.0 33 9.061199340344688E-4 0.0 3.020399780114896E-4 24.814094393533928 0.0 34 9.061199340344688E-4 0.0 3.020399780114896E-4 25.092877293238534 0.0 35 9.061199340344688E-4 0.0 3.020399780114896E-4 25.413341709908725 0.0 36 9.061199340344688E-4 0.0 3.020399780114896E-4 25.707830688469926 0.0 37 9.061199340344688E-4 0.0 3.020399780114896E-4 25.985405428262485 0.0 38 9.061199340344688E-4 0.0 3.020399780114896E-4 26.300131085350458 0.0 39 9.061199340344688E-4 0.0 3.020399780114896E-4 26.644758700261566 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATGCGG 30 2.160803E-6 45.000004 2 TCAAGCG 30 2.160803E-6 45.000004 17 ACGCGAT 20 7.0260034E-4 45.0 26 TAGACGG 20 7.0260034E-4 45.0 2 CGCGATT 20 7.0260034E-4 45.0 27 TACGGTC 20 7.0260034E-4 45.0 40 TAACGGG 20 7.0260034E-4 45.0 3 ACGGGGT 35 1.2084274E-7 45.0 5 ATCGTTG 20 7.0260034E-4 45.0 23 AGTATGG 20 7.0260034E-4 45.0 2 GAACGTA 20 7.0260034E-4 45.0 20 GTTCCAT 20 7.0260034E-4 45.0 29 GAGTTTA 20 7.0260034E-4 45.0 41 ATGCGTT 20 7.0260034E-4 45.0 12 CTACAGG 35 1.2084274E-7 45.0 2 CGGCTAC 20 7.0260034E-4 45.0 25 CATCCCC 20 7.0260034E-4 45.0 16 AATACGG 20 7.0260034E-4 45.0 2 CTTACTA 20 7.0260034E-4 45.0 10 TGATCCG 25 3.8847702E-5 44.999996 4 >>END_MODULE