SRR3552132_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552132_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	257263
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13118	5.099062049342502	No Hit
GAATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTC	7412	2.881098331279663	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCG	6689	2.6000629705787466	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGC	5048	1.9621943303156693	No Hit
GAACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCT	1700	0.6608023695595557	No Hit
GCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC	1660	0.6452540785110957	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCT	1560	0.6063833508899453	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTC	1485	0.5772303051740826	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACGCACATTCGTA	1321	0.513482311875396	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCC	1170	0.45478751316745897	No Hit
GAATGCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTT	1035	0.402312030878906	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGC	400	0.15548291048460136	No Hit
CTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGCT	367	0.14265557036962176	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGCACATT	364	0.14148944854098724	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACGCACATTCGT	335	0.13021693753085364	No Hit
CCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC	332	0.12905081570221913	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCACGCACATTCGTAT	307	0.11933313379693154	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCACGCACATTCGTATG	287	0.11155898827270147	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCG	272	0.10572837912952893	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGATA	30	2.1589112E-6	45.000004	6
ACTAAGG	30	2.1589112E-6	45.000004	2
CAATAGG	30	2.1589112E-6	45.000004	2
GCGAGAC	20	7.02307E-4	45.0	21
TCGCAGC	20	7.02307E-4	45.0	38
GATCGCA	20	7.02307E-4	45.0	36
CGCGGGT	20	7.02307E-4	45.0	4
GGGTCGT	20	7.02307E-4	45.0	7
AGGGTAC	20	7.02307E-4	45.0	6
CCATCGG	20	7.02307E-4	45.0	27
GTAGACG	20	7.02307E-4	45.0	22
CGGGACT	20	7.02307E-4	45.0	6
TAGGGCA	40	6.7793735E-9	45.0	5
CATCGGT	20	7.02307E-4	45.0	28
TGGATCG	20	7.02307E-4	45.0	34
CGATGAT	20	7.02307E-4	45.0	10
GCAATAG	20	7.02307E-4	45.0	1
ATCGGTG	20	7.02307E-4	45.0	29
AAGATCG	25	3.8823397E-5	45.0	1
CTAGGGC	35	1.2070086E-7	45.0	4

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content