##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552132_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 257263 Sequences flagged as poor quality 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.467401064280523 30.0 28.0 33.0 16.0 33.0 2 28.93841710622981 31.0 28.0 33.0 16.0 33.0 3 28.703218107539755 31.0 28.0 33.0 16.0 34.0 4 32.10161585614721 35.0 32.0 35.0 26.0 37.0 5 33.64145252134975 35.0 33.0 35.0 30.0 37.0 6 33.523336041327354 35.0 33.0 35.0 28.0 37.0 7 34.210640472979016 35.0 33.0 36.0 32.0 37.0 8 34.214041661645865 35.0 35.0 37.0 31.0 37.0 9 36.094801817595226 39.0 35.0 39.0 30.0 39.0 10 36.09812137773407 37.0 35.0 39.0 32.0 39.0 11 36.3439631816468 37.0 35.0 39.0 32.0 39.0 12 36.306425719983054 37.0 35.0 39.0 32.0 39.0 13 36.33006689652223 38.0 35.0 39.0 32.0 39.0 14 37.4961420802836 39.0 36.0 41.0 32.0 41.0 15 37.44207678523534 39.0 36.0 41.0 32.0 41.0 16 37.389927817058805 39.0 36.0 41.0 32.0 41.0 17 36.47789616073823 38.0 34.0 41.0 30.0 41.0 18 35.98974201498078 38.0 34.0 39.0 30.0 40.0 19 35.360592078923126 37.0 34.0 39.0 29.0 40.0 20 35.25381419014783 35.0 34.0 39.0 30.0 40.0 21 35.75457799994558 36.0 35.0 39.0 31.0 40.0 22 36.160543879220874 37.0 35.0 40.0 32.0 41.0 23 36.372863567633125 37.0 35.0 40.0 32.0 41.0 24 36.251159319451304 37.0 35.0 40.0 32.0 41.0 25 35.558723951753656 36.0 35.0 40.0 30.0 41.0 26 35.70164773014386 37.0 35.0 40.0 31.0 41.0 27 36.07887259341608 37.0 35.0 40.0 32.0 41.0 28 35.90818734135884 37.0 35.0 40.0 31.0 41.0 29 35.84751790968775 37.0 35.0 40.0 31.0 41.0 30 35.381967092042 37.0 35.0 40.0 29.0 41.0 31 35.095412088018875 37.0 35.0 40.0 27.0 41.0 32 34.5786141030774 37.0 34.0 40.0 23.0 41.0 33 33.76968316469916 37.0 33.0 40.0 18.0 41.0 34 33.09732452781784 37.0 33.0 40.0 12.0 41.0 35 32.59546456350117 37.0 32.0 40.0 10.0 41.0 36 32.252986243649495 37.0 31.0 40.0 8.0 41.0 37 32.20197618779226 37.0 31.0 40.0 8.0 41.0 38 31.91157686880741 37.0 31.0 40.0 8.0 41.0 39 31.786269304175104 37.0 30.0 40.0 8.0 41.0 40 31.367301166510536 36.0 29.0 40.0 8.0 41.0 41 31.22614989329985 36.0 27.0 40.0 7.0 41.0 42 31.23636512051869 36.0 27.0 40.0 7.0 41.0 43 31.24628881728037 36.0 28.0 40.0 7.0 41.0 44 31.217703284187778 36.0 28.0 40.0 7.0 41.0 45 31.174537341164488 36.0 27.0 40.0 7.0 41.0 46 31.012967274734415 36.0 27.0 40.0 7.0 41.0 47 30.969268802742718 35.0 27.0 40.0 7.0 41.0 48 30.949503037747363 35.0 27.0 40.0 7.0 41.0 49 30.920971923673438 35.0 27.0 40.0 7.0 41.0 50 30.841310254486654 35.0 26.0 40.0 7.0 41.0 51 29.18185281210279 34.0 23.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 10.0 10 14.0 11 9.0 12 6.0 13 10.0 14 21.0 15 33.0 16 99.0 17 188.0 18 405.0 19 622.0 20 927.0 21 1436.0 22 2050.0 23 3151.0 24 4838.0 25 7699.0 26 10804.0 27 11533.0 28 9911.0 29 8403.0 30 8077.0 31 8660.0 32 10281.0 33 13642.0 34 18028.0 35 24924.0 36 28330.0 37 38134.0 38 35549.0 39 9464.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.270808472263795 11.568317247330553 14.97067203600984 36.19020224439581 2 44.871590551303534 27.17880145998453 16.06877009130734 11.880837897404602 3 19.897536761990647 26.24823624073419 42.776458332523525 11.077768664751636 4 18.67738462196274 16.312100846215742 52.763514380225686 12.247000151595838 5 23.734466285474397 18.803714486731476 42.38658493448339 15.075234293310736 6 16.471470829462458 29.85233010576725 44.08679056063251 9.58940850413779 7 51.37466328232199 4.363239175474125 40.561992979946595 3.700104562257301 8 49.03503418680494 10.795567182222083 34.94595025324279 5.223448377730183 9 45.497797973280264 5.406140797549589 34.92146169484147 14.174599534328683 10 28.47436281159747 16.298107384272125 41.62627350221369 13.601256301916715 11 22.127939112892253 16.733070826352797 45.32093616260403 15.818053898150918 12 18.46903752191337 15.286691051569795 49.16952690437412 17.07474452214271 13 17.154818221042277 16.59741198695498 54.010876029588395 12.236893762414338 14 15.634195356502879 21.982562591589154 46.14849395365832 16.234748098249653 15 12.807904751169035 17.655861900078907 55.480189533667875 14.056043815084173 16 14.712181697329193 19.175318642789673 46.20174685049929 19.910752809381837 17 15.680062815095836 17.904245849578057 48.36762379354979 18.048067541776312 18 15.356658361287865 18.676218500134105 48.60007074472427 17.36705239385376 19 15.02470234740324 20.615090393877082 45.437937052743685 18.922270205975984 20 15.61631482179715 20.42540124308587 49.832272810314734 14.126011124802245 21 15.896961475221854 22.718385465457526 46.941845504406 14.442807554914621 22 14.127954661183303 17.72893886800667 47.191784283009994 20.951322187800034 23 14.676420627917732 22.329678189246025 47.29518041848225 15.698720764353988 24 17.758480620998746 18.1996633794988 44.60804701803213 19.433808981470325 25 13.654509198757692 25.67722525197949 43.80303424899811 16.86523130026471 26 14.214636383778467 19.609893377594133 46.12322798070457 20.052242257922824 27 17.391540952255085 20.04330199056996 43.41005119274828 19.155105864426677 28 13.71164916836078 19.227405417802014 47.939268375164716 19.121677038672487 29 16.451258051099458 20.1560271006713 43.53132786292627 19.86138698530298 30 15.711548104468967 22.074297508775068 43.55465029949895 18.65950408725701 31 20.26719738166779 19.33974182062714 40.363363561802515 20.029697235902557 32 17.714945406063055 23.75312423473255 38.76150087653491 19.770429482669485 33 16.113471428071662 22.35960864951431 38.5617053365622 22.965214585851832 34 18.429000672463587 24.38438485130003 36.35656895861434 20.830045517622047 35 15.084174560663602 26.5389892833404 35.28140463261332 23.095431523382686 36 19.37317064638133 25.593264480317806 37.26225691218714 17.771307961113724 37 17.20418404512114 22.8898053742668 37.05701947034746 22.848991110264592 38 19.34479501521789 27.11738571034311 32.70194314767378 20.835876126765218 39 19.790642261032485 22.857931377617458 34.451514597901756 22.8999117634483 40 17.559851202854666 27.583445734520705 35.90527981093278 18.95142325169185 41 17.27920454942996 25.5322374379526 35.67749734707284 21.511060665544598 42 18.222985816071493 24.301201494190767 38.41671752253531 19.059095167202436 43 20.51052813657619 22.01093822275259 36.313033743678645 21.16549989699257 44 19.240621465193204 22.089068385271105 35.86679779058784 22.80351235894785 45 18.001811375907145 21.3691825097274 35.67788605434905 24.951120060016404 46 22.358442527685675 24.050096593758138 34.89153123457318 18.69992964398301 47 15.84642952931436 21.54526690585121 43.00307467455483 19.605228890279598 48 19.00584227036146 22.63675693745311 35.831814135728806 22.52558665645662 49 17.5812301030463 19.857888619817075 42.056183749703614 20.504697527433017 50 17.94894718634238 19.83689842690165 39.31229908692661 22.901855299829357 51 17.71377928423442 20.193731706463815 35.39762810820056 26.694860901101208 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 170.0 1 436.5 2 703.0 3 10728.0 4 20753.0 5 13552.0 6 6351.0 7 6057.0 8 5763.0 9 5703.5 10 5644.0 11 5545.0 12 5446.0 13 5181.5 14 4917.0 15 4681.5 16 4446.0 17 4118.5 18 3791.0 19 3480.0 20 3169.0 21 2959.0 22 2749.0 23 2602.5 24 2456.0 25 2427.0 26 2375.5 27 2353.0 28 2586.0 29 2819.0 30 3016.5 31 3214.0 32 3525.0 33 3836.0 34 4325.5 35 4815.0 36 4844.5 37 4874.0 38 5261.0 39 5648.0 40 6412.0 41 7176.0 42 8504.0 43 9832.0 44 10709.0 45 11586.0 46 26171.5 47 40757.0 48 29188.0 49 17619.0 50 16986.5 51 16354.0 52 14234.0 53 12114.0 54 11092.0 55 10070.0 56 9133.5 57 8197.0 58 7443.5 59 6690.0 60 6061.5 61 5433.0 62 4874.0 63 4315.0 64 4061.5 65 3808.0 66 3222.0 67 2636.0 68 2171.5 69 1707.0 70 1432.5 71 1158.0 72 919.0 73 680.0 74 530.0 75 294.0 76 208.0 77 154.5 78 101.0 79 79.0 80 57.0 81 45.5 82 34.0 83 23.5 84 13.0 85 11.5 86 10.0 87 6.5 88 3.0 89 3.0 90 3.0 91 3.0 92 3.0 93 3.0 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 257263.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.39025421056179 #Duplication Level Percentage of deduplicated Percentage of total 1 76.39267476910356 32.3830490328707 2 9.076595049360781 7.695183430174605 3 3.8896437720944554 4.946489648628374 4 2.565764470202892 4.3505363254531195 5 1.8469938112668296 3.9147268592467652 6 1.419223492127329 3.6096746767727237 7 1.0586316205347108 3.1412964456863772 8 0.8405220319631485 2.850395408359665 9 0.640348835513799 2.4430094928780446 >10 2.1899320441741654 13.572267263584475 >50 0.04581030960355061 1.3023466120847114 >100 0.022905154801775306 1.9769494925097904 >500 0.0 0.0 >1k 0.0069711340701055285 4.192416273780638 >5k 0.0029876288871880834 8.083836393779622 >10k+ 9.95876295729361E-4 5.537822644190355 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13118 5.099062049342502 No Hit GAATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTC 7412 2.881098331279663 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCG 6689 2.6000629705787466 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGC 5048 1.9621943303156693 No Hit GAACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCT 1700 0.6608023695595557 No Hit GCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC 1660 0.6452540785110957 No Hit GAATGACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCT 1560 0.6063833508899453 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTC 1485 0.5772303051740826 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACGCACATTCGTA 1321 0.513482311875396 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCC 1170 0.45478751316745897 No Hit GAATGCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTT 1035 0.402312030878906 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGC 400 0.15548291048460136 No Hit CTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGCT 367 0.14265557036962176 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGCACATT 364 0.14148944854098724 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACGCACATTCGT 335 0.13021693753085364 No Hit CCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC 332 0.12905081570221913 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCACGCACATTCGTAT 307 0.11933313379693154 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCACGCACATTCGTATG 287 0.11155898827270147 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCG 272 0.10572837912952893 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1578151541418704 0.0 2 0.0 0.0 0.0 1.1093705663076308 0.0 3 0.0 0.0 0.0 1.3286014700909186 0.0 4 0.0 0.0 0.0 2.313197000734657 0.0 5 0.0 0.0 0.0 6.134966940446159 0.0 6 0.0 0.0 0.0 7.009169604645829 0.0 7 0.0 0.0 0.0 8.089387125237597 0.0 8 0.0 0.0 0.0 9.371343722183136 0.0 9 0.0 0.0 0.0 9.694359468714895 0.0 10 0.0 0.0 0.0 13.056677407944399 0.0 11 0.0 0.0 0.0 14.311035788278922 0.0 12 0.0 0.0 0.0 17.31535432611763 0.0 13 0.0 0.0 0.0 17.78879978854324 0.0 14 0.0 0.0 0.0 18.076831880215966 0.0 15 0.0 0.0 0.0 18.874070503725758 0.0 16 0.0 0.0 0.0 19.426812250498518 0.0 17 0.0 0.0 0.0 19.95273319521268 0.0 18 0.0 0.0 0.0 20.517136160271786 0.0 19 0.0 0.0 0.0 21.026731399385064 0.0 20 0.0 0.0 0.0 21.402222628205376 0.0 21 0.0 0.0 0.0 21.75711237138648 0.0 22 0.0 0.0 0.0 22.193241935295788 0.0 23 0.0 0.0 0.0 22.52286570552314 0.0 24 0.0 0.0 0.0 22.826446088244325 0.0 25 0.0 0.0 0.0 23.094654108830262 0.0 26 0.0 0.0 0.0 23.366360494902104 0.0 27 0.0 0.0 0.0 23.6466184410506 0.0 28 0.0 0.0 0.0 23.90549748700746 0.0 29 0.0 0.0 0.0 24.183811896774895 0.0 30 0.0 0.0 0.0 24.478063304867003 0.0 31 0.0 0.0 0.0 24.753268056424748 0.0 32 0.0 0.0 0.0 25.031971173468396 0.0 33 0.0 0.0 0.0 25.303677559540237 0.0 34 0.0 0.0 0.0 25.584712920241152 0.0 35 0.0 0.0 0.0 25.83504040612136 0.0 36 0.0 0.0 0.0 26.118019303203337 0.0 37 0.0 0.0 0.0 26.375732227331564 0.0 38 0.0 0.0 0.0 26.64899344250825 0.0 39 0.0 0.0 0.0 26.94674321608626 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGATA 30 2.1589112E-6 45.000004 6 ACTAAGG 30 2.1589112E-6 45.000004 2 CAATAGG 30 2.1589112E-6 45.000004 2 GCGAGAC 20 7.02307E-4 45.0 21 TCGCAGC 20 7.02307E-4 45.0 38 GATCGCA 20 7.02307E-4 45.0 36 CGCGGGT 20 7.02307E-4 45.0 4 GGGTCGT 20 7.02307E-4 45.0 7 AGGGTAC 20 7.02307E-4 45.0 6 CCATCGG 20 7.02307E-4 45.0 27 GTAGACG 20 7.02307E-4 45.0 22 CGGGACT 20 7.02307E-4 45.0 6 TAGGGCA 40 6.7793735E-9 45.0 5 CATCGGT 20 7.02307E-4 45.0 28 TGGATCG 20 7.02307E-4 45.0 34 CGATGAT 20 7.02307E-4 45.0 10 GCAATAG 20 7.02307E-4 45.0 1 ATCGGTG 20 7.02307E-4 45.0 29 AAGATCG 25 3.8823397E-5 45.0 1 CTAGGGC 35 1.2070086E-7 45.0 4 >>END_MODULE